Rh4CG002700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
543608 .. 543955
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG002700.1

Sequence Viewer

Length: 348 bp
ATGCAAGATGATGATTTAGCTGCCAATGAAGAATTAGACCCGGAGCTTGATAATCATGAAGACGTGGAGGAAAAGATAAAAGTGGTTGAGGTGAGTTCTGATTCTTCAACCTCTACTTTTTCTATGGACTCTGCTAATTCGATAATCACATCAGACACAGTTGAGTCTATTTATAATCCATATGCTGCCTCTTATAATGATTTCTTAATTCCATATCAATCTATGAATCATGCTTCTGTTCATTCTGTTAAGGATGATAATGAGATCAATAATGGCAATATTGTGGCTCTGATTGATGACTCTAGACAAATGGGATCCTCTGCTCTGTCTCATAACAATAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.71

Weight (kDa)

4.1

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 174, 195
AclWI GGATC 2 cut(s) 309, 322
AgsI TTSAA 1 cut(s) 108
AjiI CACGTC 1 cut(s) 64
AluBI AGCT 2 cut(s) 20, 46
AluI AGCT 2 cut(s) 20, 46
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 309, 322
ApeKI GCWGC 2 cut(s) 20, 185
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 103
BamHI GGATCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 7, 172
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 1 cut(s) 303
BisI GCNGC 2 cut(s) 21, 186
BlsI GCNGC 2 cut(s) 22, 187
Bme1390I CCNGG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 7, 172
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 333
Bsp143I GATC 2 cut(s) 264, 314
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 2 cut(s) 309, 322
BssMI GATC 2 cut(s) 264, 314
Bst4CI ACNGT 1 cut(s) 160
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 267, 317
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 264, 314
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 7, 172
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 259
CciI TCATGA 1 cut(s) 55
CviAII CATG 2 cut(s) 56, 230
CviJI RGCY 3 cut(s) 20, 46, 287
CviKI_1 RGCY 3 cut(s) 20, 46, 287
DpnI GATC 2 cut(s) 266, 316
DpnII GATC 2 cut(s) 264, 314
FaeI CATG 2 cut(s) 59, 233
FatI CATG 2 cut(s) 55, 229
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 21, 186
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 21, 186
FspBI CTAG 1 cut(s) 303
GluI GCNGC 2 cut(s) 21, 186
HapII CCGG 1 cut(s) 41
Hin1II CATG 2 cut(s) 59, 233
HinfI GANTC 5 cut(s) 101, 128, 164, 226, 299
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 100, 154, 291
Hpy188III TCNNGA 2 cut(s) 56, 303
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 59, 233
Kzo9I GATC 2 cut(s) 264, 314
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 1 cut(s) 54
Lsp1109I GCAGC 2 cut(s) 7, 172
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 63
MalI GATC 2 cut(s) 266, 316
MboI GATC 2 cut(s) 264, 314
MboII GAAGA 3 cut(s) 41, 71, 96
MflI RGATCY 1 cut(s) 314
MluCI AATT 3 cut(s) 32, 136, 207
MlyI GAGTC 3 cut(s) 122, 173, 293
MnlI CCTC 5 cut(s) 61, 82, 121, 199, 328
MseI TTAA 2 cut(s) 206, 249
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 41
NciI CCSGG 1 cut(s) 41
NdeI CATATG 1 cut(s) 181
NdeII GATC 2 cut(s) 264, 314
NlaIII CATG 2 cut(s) 59, 233
NlaIV GGNNCC 1 cut(s) 316
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 2 cut(s) 101, 226
PkrI GCNGC 2 cut(s) 22, 187
PleI GAGTC 3 cut(s) 122, 172, 293
PpsI GAGTC 3 cut(s) 122, 172, 293
PsiI TTATAA 2 cut(s) 174, 195
PspN4I GGNNCC 1 cut(s) 316
PsuI RGATCY 1 cut(s) 314
SaqAI TTAA 2 cut(s) 206, 249
SatI GCNGC 2 cut(s) 21, 186
Sau3AI GATC 2 cut(s) 264, 314
SchI GAGTC 3 cut(s) 122, 173, 293
ScrFI CCNGG 1 cut(s) 41
SetI ASST 5 cut(s) 22, 48, 66, 93, 113
SgeI CNNG 8 cut(s) 17, 52, 53, 59, 68, 76, 242, 315
Sse9I AATT 3 cut(s) 32, 136, 207
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 32, 136, 207
TfiI GAWTC 2 cut(s) 101, 226
Tru1I TTAA 2 cut(s) 206, 249
Tru9I TTAA 2 cut(s) 206, 249
TseI GCWGC 2 cut(s) 20, 185
TspDTI ATGAA 4 cut(s) 42, 72, 230, 239
XbaI TCTAGA 1 cut(s) 302
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.