Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

25845386 .. 25846656

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG131500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTTGTTTAAGGCCAGATTCTAGAGTTAAAAAGGGTCCGCCTCGTAATCCTGCAGCCTCTGCTAATCACTCTTTAAATGCTCGTGGTCGCTTTGCTCCTCATTTTAATTTTCGCCGCCCTAGCGTCACTTTTGTTGATGCTACTCGCAATTTGCATGACACTGTGAAAGTTGACAATTCTCCTGTTCACCATCATGCACATAAGCCACCCTTGGTTCCTGCTAGTTATGTTTCCCAAACTTTGGTGGTTGCTGCTAAGGAACCTAAGCCTCTTGGTATTATCCTCCCTAATGGTGAGTCTGATCTCAACTTTAATACTGATGACCTTGTTGCTGATGAGGAACTAGATCAGGATTTGGAGGCAGATGTTGAAGAAGATGTTGATGTCGAGGAGGTAAGTTCTGCTGATTCCTCTCTTTTATCTTATAGTGATTCTGAGCATTCGGTTATTACCTCTGACACCGTAGAAACCTTAATGGTTTATGACACTGAGTATGTGAATTATCTTGAATTATTATATAATCCTGAGAATTTGAATACTGCTTCTGTCAATTCTGTTCAAGAGGTTGGGGCTCTTGAACTAGACTCTCAAGTGAATACTACTAATCTTCCTGCTACTGACTTGTCTGTGATGCCTTTCCATAGCCCCAAGAAGAGGGGTAGAGACTATCTGGAGAACCTCACCACAGAACCCTCCTCTTCTCATTTACCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.37

Weight (kDa)

4.67

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	244
AciI	CCGC	2 cut(s)	41, 118
AcsI	RAATTY	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	244, 657
AgsI	TTSAA	5 cut(s)	374, 512, 538, 563, 581
Alw26I	GTCTC	1 cut(s)	660
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	56, 254
ApoI	RAATTY	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	182, 308, 676
AvaII	GGWCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	577
BauI	CACGAG	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	68, 241
BccI	CCATC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	5 cut(s)	24, 123, 225, 347, 584
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	3 cut(s)	57, 118, 255
BlsI	GCNGC	3 cut(s)	58, 119, 256
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	39, 219, 264
BmsI	GCATC	2 cut(s)	130, 624
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	2 cut(s)	258, 267
BpuEI	CTTGAG	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 657
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	244, 657
BseMII	CTCAG	3 cut(s)	429, 483, 519
BseRI	GAGGAG	3 cut(s)	90, 407, 688
BseXI	GCAGC	2 cut(s)	68, 241
BshFI	GGCC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	244, 657
BsmAI	GTCTC	1 cut(s)	660
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	304, 349
BspACI	CCGC	2 cut(s)	41, 118
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	3 cut(s)	430, 484, 520
BspLI	GGNNCC	3 cut(s)	39, 219, 264
BspMAI	CTGCAG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	304, 349
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	166, 466
Bst6I	CTCTTC	2 cut(s)	650, 706
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDEI	CTNAG	5 cut(s)	258, 267, 438, 492, 528
BstKTI	GATC	2 cut(s)	307, 352
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	304, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 123
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	68, 241
BsuRI	GGCC	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	162, 489
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	115
CviAII	CATG	2 cut(s)	158, 197
CviJI	RGCY	6 cut(s)	16, 59, 208, 271, 575, 648
CviKI_1	RGCY	6 cut(s)	16, 59, 208, 271, 575, 648
DdeI	CTNAG	5 cut(s)	258, 267, 438, 492, 528
DpnI	GATC	2 cut(s)	306, 351
DpnII	GATC	2 cut(s)	304, 349
DraI	TTTAAA	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	650, 706
EarI	CTCTTC	2 cut(s)	650, 706
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	161, 200
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	2 cut(s)	157, 196
Fnu4HI	GCNGC	3 cut(s)	57, 118, 255
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	3 cut(s)	57, 118, 255
FspBI	CTAG	5 cut(s)	24, 123, 225, 347, 584
GluI	GCNGC	3 cut(s)	57, 118, 255
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	1 cut(s)	16
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	161, 200
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	20, 299, 410, 434, 587
HphI	GGTGA	3 cut(s)	182, 308, 676
Hpy166II	GTNNAC	2 cut(s)	175, 190
Hpy188I	TCNGA	3 cut(s)	304, 439, 460
Hpy188III	TCNNGA	7 cut(s)	24, 353, 509, 527, 563, 578, 674
Hpy8I	GTNNAC	2 cut(s)	175, 190
HpyCH4III	ACNGT	2 cut(s)	166, 466
HpyCH4V	TGCA	3 cut(s)	56, 157, 200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 123
HpyF3I	CTNAG	5 cut(s)	258, 267, 438, 492, 528
Hsp92II	CATG	2 cut(s)	161, 200
Kzo9I	GATC	2 cut(s)	304, 349
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	8 cut(s)	30, 66, 198, 234, 338, 540, 627, 659
Lsp1109I	GCAGC	2 cut(s)	68, 241
LweI	GCATC	2 cut(s)	130, 624
MaeI	CTAG	5 cut(s)	24, 123, 225, 347, 584
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	306, 351
MboI	GATC	2 cut(s)	304, 349
MboII	GAAGA	5 cut(s)	386, 389, 602, 667, 693
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	7 cut(s)	109, 151, 178, 502, 512, 532, 553
MlyI	GAGTC	2 cut(s)	308, 581
MseI	TTAA	6 cut(s)	11, 30, 77, 108, 315, 476
MslI	CAYNNNNRTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	62, 123
NdeII	GATC	2 cut(s)	304, 349
NlaIII	CATG	2 cut(s)	161, 200
NlaIV	GGNNCC	3 cut(s)	39, 219, 264
NmuCI	GTSAC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	20, 410, 434
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	58, 119, 256
PleI	GAGTC	2 cut(s)	307, 581
PpsI	GAGTC	2 cut(s)	307, 581
PspN4I	GGNNCC	3 cut(s)	39, 219, 264
PspPI	GGNCC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	6 cut(s)	11, 30, 77, 108, 315, 476
SatI	GCNGC	3 cut(s)	57, 118, 255
Sau3AI	GATC	2 cut(s)	304, 349
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	308, 581
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	8 cut(s)	268, 330, 399, 458, 476, 570, 684, 715
SfaNI	GCATC	2 cut(s)	130, 624
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	7 cut(s)	109, 151, 178, 502, 512, 532, 553
SsiI	CCGC	2 cut(s)	41, 118
SspMI	CTAG	5 cut(s)	24, 123, 225, 347, 584
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	166, 466
TaqI	TCGA	1 cut(s)	390
TasI	AATT	7 cut(s)	109, 151, 178, 502, 512, 532, 553
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	20, 410, 434
Tru1I	TTAA	6 cut(s)	11, 30, 77, 108, 315, 476
Tru9I	TTAA	6 cut(s)	11, 30, 77, 108, 315, 476
TscAI	CASTG	2 cut(s)	169, 496
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	56, 254
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	2 cut(s)	169, 496
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	1 cut(s)	532
XbaI	TCTAGA	1 cut(s)	23
XspI	CTAG	5 cut(s)	24, 123, 225, 347, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.