Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

62307718 .. 62307969

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTCTACACGGGCTTATCTCTAGCGACCTTCTTCACACTTCTGGCTATGATCTTTGCCACTTACCATGTCTTTTCTGGGATTTTTGGGCCGTCCGAGACCCATCACCTCCCCAGGAACTTGGAGGAGATGCAGCCTCTGCTGCCGCAGGTCCAGCTAGGCGAGATCACCGCCGAGGAGCTGAAACAGTACGATGGCTTTGATCCTAACAAGCCTTTGCTCATGGCCATCAAGTCTATGATCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

83

Amino Acids

9.49

Weight (kDa)

5.08

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	146, 171
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	225
AfaI	GTAC	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	2 cut(s)	157, 181
AluI	AGCT	2 cut(s)	157, 181
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	2 cut(s)	89, 225
ApeKI	GCWGC	2 cut(s)	133, 142
AspS9I	GGNCC	2 cut(s)	89, 151
AsuHPI	GGTGA	2 cut(s)	98, 160
AvaII	GGWCC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	129, 145
BccI	CCATC	3 cut(s)	111, 188, 236
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	23, 158
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	134, 143, 146
BlsI	GCNGC	3 cut(s)	135, 144, 147
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	89, 151
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	113, 174
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	113, 174
BseRI	GAGGAG	2 cut(s)	140, 191
BseXI	GCAGC	2 cut(s)	129, 145
BshFI	GGCC	2 cut(s)	91, 227
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	91, 227
Bso31I	GGTCTC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	51, 165, 202, 240
BspACI	CCGC	2 cut(s)	146, 171
BspANI	GGCC	2 cut(s)	91, 227
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	113, 174
BssMI	GATC	4 cut(s)	51, 165, 202, 240
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	54, 168, 205, 243
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	4 cut(s)	51, 165, 202, 240
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 142, 154
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	129, 145
BstXI	CCANNNNNNTGG	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	91, 227
BveI	ACCTGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	89, 151
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	68, 223
CviJI	RGCY	9 cut(s)	15, 47, 91, 136, 157, 181, 198, 214, 227
CviKI_1	RGCY	9 cut(s)	15, 47, 91, 136, 157, 181, 198, 214, 227
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	4 cut(s)	53, 167, 204, 242
DpnII	GATC	4 cut(s)	51, 165, 202, 240
EaeI	YGGCCR	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	71, 226
FaiI	YATR	4 cut(s)	50, 69, 224, 239
FatI	CATG	2 cut(s)	67, 222
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	134, 143, 146
Fsp4HI	GCNGC	3 cut(s)	134, 143, 146
FspBI	CTAG	2 cut(s)	23, 158
GluI	GCNGC	3 cut(s)	134, 143, 146
HaeIII	GGCC	2 cut(s)	91, 227
Hin1II	CATG	2 cut(s)	71, 226
HphI	GGTGA	2 cut(s)	98, 160
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 142, 154
Hsp92II	CATG	2 cut(s)	71, 226
Kzo9I	GATC	4 cut(s)	51, 165, 202, 240
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	29, 63, 100, 127, 134, 167
Lsp1109I	GCAGC	2 cut(s)	129, 145
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	2 cut(s)	23, 158
MalI	GATC	4 cut(s)	53, 167, 204, 242
MboI	GATC	4 cut(s)	51, 165, 202, 240
MboII	GAAGA	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	227
MnlI	CCTC	4 cut(s)	118, 119, 147, 169
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	139, 142, 154
NdeII	GATC	4 cut(s)	51, 165, 202, 240
NlaIII	CATG	2 cut(s)	71, 226
NmeAIII	GCCGAG	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	135, 144, 147
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	89, 151
PstNI	CAGNNNCTG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SatI	GCNGC	3 cut(s)	134, 143, 146
Sau3AI	GATC	4 cut(s)	51, 165, 202, 240
Sau96I	GGNCC	2 cut(s)	89, 151
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	5 cut(s)	32, 111, 153, 159, 183
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	151
SsiI	CCGC	2 cut(s)	146, 171
SspMI	CTAG	2 cut(s)	23, 158
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	189
TauI	GCSGC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	133, 142
VpaK11BI	GGWCC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	2 cut(s)	23, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.