Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

82762543 .. 82763184

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTATCTAGGCTTCCAAATGAACCCAAGATTATTCCAGATAAGGACTCAAATCGTGTCCCCTGTGCTCCCACTAATCTACCTGAGGAAAATCTATTTATTTTTCCTTGTATCCGTGGTCCTCTGCAGGGGATGCCAGCATCACCAAATCGAAACTCTCTATCATCCAGACCTACCCCAACACTGAATCGAAATGCCCCAACTCGTCCCAGCTCTGTGTTTACTCGCTCTGGTTCTCGACCCAATTTTCGACGTCCTGGAGTAACTTATGTTGATGCAACGTGTACTATCCATGACACTCTGGATTATGGGTTTGGAGACCACTCTGAAGCAGTCGAGCAACACCCTTTGCCATCTGTTATTCTTGATGACTCCCATGCCCATGCCATTGTGGTAGCTGCTGCGGCTCTAGATCATGAGCCAGAACATGAGCCGCATGTCCATCCTCAGGTTAATCCCCAAGAGGGGCTGCAAGATGATGATTTAGCTGCCAATGAAGAATTAGACCCAGAGCTTGACAATGATGAAGACGTGGAGGAAGAGATAGAAGTGGTTGAGGTGAGTTCTGATTCTTCAACCTCTACTTTATCTATGGACTCTGCTAGTTCGATAATCACATCAGACACAGTTGAGTCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.22

Weight (kDa)

4.39

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	640
AatII	GACGTC	1 cut(s)	256
AciI	CCGC	2 cut(s)	404, 434
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	4 cut(s)	128, 448, 464, 465
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	576
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	213, 398, 488, 514
AluI	AGCT	4 cut(s)	213, 398, 488, 514
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	312
ApeKI	GCWGC	4 cut(s)	398, 401, 469, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	135, 571
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	2 cut(s)	84, 447
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	4 cut(s)	385, 388, 456, 475
BccI	CCATC	2 cut(s)	361, 450
BciT130I	CCWGG	1 cut(s)	258
BciVI	GTATCC	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	3 cut(s)	9, 410, 603
BfmI	CTRYAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	6 cut(s)	399, 402, 405, 434, 470, 489
BlsI	GCNGC	6 cut(s)	400, 403, 406, 435, 471, 490
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	3 cut(s)	123, 149, 265
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 448, 464, 465
Bse21I	CCTNAGG	2 cut(s)	84, 447
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	3 cut(s)	138, 164, 442
BseLI	CCNNNNNNNGG	4 cut(s)	128, 448, 464, 465
BseMII	CTCAG	2 cut(s)	75, 461
BseXI	GCAGC	4 cut(s)	385, 388, 456, 475
BseYI	CCCAGC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	44, 192
BslI	CCNNNNNNNGG	4 cut(s)	128, 448, 464, 465
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	44, 192
Bso31I	GGTCTC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	2 cut(s)	404, 434
BspCNI	CTCAG	2 cut(s)	76, 460
BspHI	TCATGA	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	1 cut(s)	534
BstACI	GRCGYC	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	84, 447
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	138, 164, 442
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 133, 404
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	4 cut(s)	385, 388, 456, 475
BstV2I	GAAGAC	1 cut(s)	534
Bsu36I	CCTNAGG	2 cut(s)	84, 447
BsuI	GTATCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	3 cut(s)	138, 164, 442
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	6 cut(s)	293, 377, 383, 416, 428, 437
CviJI	RGCY	9 cut(s)	13, 213, 398, 407, 421, 433, 469, 488, 514
CviKI_1	RGCY	9 cut(s)	13, 213, 398, 407, 421, 433, 469, 488, 514
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	84, 447
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	348
Eco81I	CCTNAGG	2 cut(s)	84, 447
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	6 cut(s)	296, 380, 386, 419, 431, 440
FaqI	GGGAC	2 cut(s)	44, 192
FatI	CATG	6 cut(s)	292, 376, 382, 415, 427, 436
Fnu4HI	GCNGC	6 cut(s)	399, 402, 405, 434, 470, 489
FokI	GGATG	3 cut(s)	145, 151, 429
Fsp4HI	GCNGC	6 cut(s)	399, 402, 405, 434, 470, 489
FspBI	CTAG	3 cut(s)	9, 410, 603
GluI	GCNGC	6 cut(s)	399, 402, 405, 434, 470, 489
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	6 cut(s)	296, 380, 386, 419, 431, 440
HinfI	GANTC	6 cut(s)	47, 187, 371, 569, 596, 632
HphI	GGTGA	2 cut(s)	135, 571
Hpy166II	GTNNAC	2 cut(s)	222, 285
Hpy188I	TCNGA	3 cut(s)	328, 568, 622
Hpy188III	TCNNGA	7 cut(s)	38, 168, 237, 302, 365, 410, 416
Hpy8I	GTNNAC	2 cut(s)	222, 285
Hpy99I	CGWCG	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	3 cut(s)	253, 281, 531
HpyCH4V	TGCA	3 cut(s)	127, 278, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 133, 404
HpyF3I	CTNAG	2 cut(s)	84, 447
HpySE526I	ACGT	3 cut(s)	253, 281, 531
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	6 cut(s)	296, 380, 386, 419, 431, 440
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	4 cut(s)	385, 388, 456, 475
LweI	GCATC	3 cut(s)	123, 149, 265
MaeI	CTAG	3 cut(s)	9, 410, 603
MaeII	ACGT	3 cut(s)	253, 281, 531
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	4 cut(s)	509, 539, 551, 564
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	244, 500
MlyI	GAGTC	4 cut(s)	41, 365, 590, 641
MnlI	CCTC	7 cut(s)	79, 132, 456, 457, 529, 550, 589
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	10, 133, 404
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	6 cut(s)	296, 380, 386, 419, 431, 440
NspI	RCATGY	1 cut(s)	440
PagI	TCATGA	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	187, 569
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	6 cut(s)	400, 403, 406, 435, 471, 490
PleI	GAGTC	4 cut(s)	41, 365, 590, 640
PpsI	GAGTC	4 cut(s)	41, 365, 590, 640
PsiI	TTATAA	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	6 cut(s)	399, 402, 405, 434, 470, 489
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	4 cut(s)	41, 365, 590, 641
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	3 cut(s)	123, 149, 265
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	2 cut(s)	244, 500
SsiI	CCGC	2 cut(s)	404, 434
SspMI	CTAG	3 cut(s)	9, 410, 603
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	3 cut(s)	256, 284, 534
TaqI	TCGA	6 cut(s)	151, 190, 238, 250, 336, 608
TasI	AATT	2 cut(s)	244, 500
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	2 cut(s)	407, 436
TfiI	GAWTC	2 cut(s)	187, 569
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	4 cut(s)	398, 401, 469, 488
TspDTI	ATGAA	3 cut(s)	36, 510, 540
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	440
XspI	CTAG	3 cut(s)	9, 410, 603
ZraI	GACGTC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.