Rroxscaffold_3G00219180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001347
Physical Location & Seq
Reverse (-)
1332759 .. 1333097
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219180.1

Sequence Viewer

Length: 339 bp
ATGGCTCGCAACTCGGGAAACACCGAAGGAGGTGATCGTGGCCTACACGGGCCTATCTCCGGCGACCTTCTTCACACTCTTGGCTCTTCTCGTGGCCTCTTACCATCCGCTTTCGGGCTTTTTGGGTCGTCCGATACCCACCGTGGCCTAGGAGCTTGGAGGAGATCCAGCCTCGCCGCCGCCATCCAGCTCGATGAGATCACCGAGGAGGAGGCTGAAGCAAGGCAAAGGCTCGATCCGAAGAAGCCTCGCCTATGGCACTCAATACGGATTCAATTACTCCTTCCCTCTTTCTTCTCTCACCCGTTCATCTCCGTACGATGTGTTTTTGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

8.05

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 108, 177, 180
AclWI GGATC 2 cut(s) 159, 230
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 2 cut(s) 59, 114
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 2 cut(s) 155, 190
AluI AGCT 2 cut(s) 155, 190
AlwI GGATC 2 cut(s) 159, 230
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 4 cut(s) 40, 50, 94, 145
AspA2I CCTAGG 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 44, 193, 293
AvaI CYCGRG 1 cut(s) 13
AvrII CCTAGG 1 cut(s) 148
BauI CACGAG 1 cut(s) 90
BccI CCATC 2 cut(s) 112, 191
BfaI CTAG 1 cut(s) 149
BisI GCNGC 2 cut(s) 177, 180
BlnI CCTAGG 1 cut(s) 148
BlsI GCNGC 2 cut(s) 178, 181
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 142, 148, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 114
BseDI CCNNGG 3 cut(s) 142, 148, 204
BseGI GGATG 2 cut(s) 104, 183
BseLI CCNNNNNNNGG 2 cut(s) 59, 114
BseRI GAGGAG 3 cut(s) 175, 221, 224
BshFI GGCC 4 cut(s) 42, 52, 96, 147
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 60
BsiWI CGTACG 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 59, 114
BsnI GGCC 4 cut(s) 42, 52, 96, 147
BsoBI CYCGRG 1 cut(s) 13
Bsp143I GATC 4 cut(s) 34, 164, 198, 235
BspACI CCGC 3 cut(s) 108, 177, 180
BspANI GGCC 4 cut(s) 42, 52, 96, 147
BspPI GGATC 2 cut(s) 159, 230
BspQI GCTCTTC 1 cut(s) 91
BssECI CCNNGG 3 cut(s) 142, 148, 204
BssMI GATC 4 cut(s) 34, 164, 198, 235
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 2 cut(s) 104, 183
BstKTI GATC 4 cut(s) 37, 167, 201, 238
BstMBI GATC 4 cut(s) 34, 164, 198, 235
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BsuRI GGCC 4 cut(s) 42, 52, 96, 147
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 2 cut(s) 104, 183
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 317
CviQI GTAC 1 cut(s) 317
DpnI GATC 4 cut(s) 36, 166, 200, 237
DpnII GATC 4 cut(s) 34, 164, 198, 235
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaiI YATR 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 177, 180
FokI GGATG 2 cut(s) 91, 170
Fsp4HI GCNGC 2 cut(s) 177, 180
FspBI CTAG 1 cut(s) 149
GluI GCNGC 2 cut(s) 177, 180
HaeIII GGCC 4 cut(s) 42, 52, 96, 147
HapII CCGG 1 cut(s) 60
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 60
HphI GGTGA 3 cut(s) 44, 193, 293
Hpy188I TCNGA 2 cut(s) 133, 240
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 20, 77, 293
HpyCH4III ACNGT 1 cut(s) 143
Kzo9I GATC 4 cut(s) 34, 164, 198, 235
LguI GCTCTTC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 73, 181, 200
MaeI CTAG 1 cut(s) 149
MalI GATC 4 cut(s) 36, 166, 200, 237
MboI GATC 4 cut(s) 34, 164, 198, 235
MboII GAAGA 4 cut(s) 62, 78, 253, 286
MflI RGATCY 1 cut(s) 164
MluCI AATT 1 cut(s) 275
MnlI CCTC 9 cut(s) 23, 107, 153, 182, 199, 202, 205, 258, 298
MspI CCGG 1 cut(s) 60
NdeII GATC 4 cut(s) 34, 164, 198, 235
PciSI GCTCTTC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 271
Pfl23II CGTACG 1 cut(s) 316
PkrI GCNGC 2 cut(s) 178, 181
PspLI CGTACG 1 cut(s) 316
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 91
SatI GCNGC 2 cut(s) 177, 180
Sau3AI GATC 4 cut(s) 34, 164, 198, 235
Sau96I GGNCC 1 cut(s) 50
SetI ASST 4 cut(s) 34, 69, 157, 192
Sse9I AATT 1 cut(s) 275
SsiI CCGC 3 cut(s) 108, 177, 180
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 192, 234
TasI AATT 1 cut(s) 275
TauI GCSGC 2 cut(s) 179, 182
TfiI GAWTC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 298
TspGWI ACGGA 2 cut(s) 283, 304
XmaJI CCTAGG 1 cut(s) 148
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.