AT1G27550

cysteine-rich repeat secretory protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9568813 .. 9569330
518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27550.1

Sequence Viewer

Length: 378 bp
ATGCAGAGATCTAGTACGTTCAAACAACGATGGAGTTGTCAGAATCCTGAGTCTGCAATGGCCATGCGTTCGACTTTGATTGAGCGACAAGAAGCCGGATCTCCATTGCTGATGATGTATGCAGAAAAGGATGGTTATCGCAGTAATGTCTTTAGCGAGGAGAGGATCGATCTTCCACCACTAGAATCATTGAAAGGTAGCCTTTTAAAGATTGAGCGAGTAGGAGAGGATAAAGTCAGGGATATATTAATCAGCGATTTATCGCGTGGGGCTCCTCATACTGCCGAGGATCTGAGAGGCCGTTTGTGGGTAGGCGACAAGAAGGAAGACTACGTTGTTGTGTGGCATTTTGAAATGAACGGAATACTAATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.4

Weight (kDa)

5.73

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 265
AclWI GGATC 3 cut(s) 106, 173, 297
AcoI YGGCCR 1 cut(s) 60
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 3 cut(s) 22, 193, 353
AlwI GGATC 3 cut(s) 106, 173, 297
AoxI GGCC 2 cut(s) 60, 298
AseI ATTAAT 1 cut(s) 248
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 274
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 2 cut(s) 24, 125
BceAI ACGGC 1 cut(s) 285
BfaI CTAG 2 cut(s) 12, 182
BglII AGATCT 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse3DI GCAATG 2 cut(s) 63, 104
Bse8I GATNNNNATC 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 136
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 2 cut(s) 63, 104
BseMII CTCAG 2 cut(s) 39, 284
BseRI GAGGAG 2 cut(s) 173, 264
Bsh1236I CGCG 1 cut(s) 265
BshFI GGCC 2 cut(s) 62, 300
BshVI ATCGAT 1 cut(s) 168
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 2 cut(s) 62, 300
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 5 cut(s) 8, 98, 165, 169, 289
BspANI GGCC 2 cut(s) 62, 300
BspCNI CTCAG 2 cut(s) 40, 285
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 3 cut(s) 106, 173, 297
BsrDI GCAATG 2 cut(s) 63, 104
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 5 cut(s) 8, 98, 165, 169, 289
BstDEI CTNAG 2 cut(s) 48, 293
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 5 cut(s) 11, 101, 168, 172, 292
BstMBI GATC 5 cut(s) 8, 98, 165, 169, 289
BstUI CGCG 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 3 cut(s) 8, 98, 289
BstYI RGATCY 3 cut(s) 8, 98, 289
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 2 cut(s) 62, 300
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 1 cut(s) 15
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 62, 95, 201, 272, 300
CviKI_1 RGCY 5 cut(s) 62, 95, 201, 272, 300
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 2 cut(s) 48, 293
DpnI GATC 5 cut(s) 10, 100, 167, 171, 291
DpnII GATC 5 cut(s) 8, 98, 165, 169, 289
DraI TTTAAA 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 274
FaeI CATG 1 cut(s) 67
FaiI YATR 6 cut(s) 65, 120, 245, 279, 374, 376
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 1 cut(s) 63
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 274
FspBI CTAG 2 cut(s) 12, 182
HaeIII GGCC 2 cut(s) 62, 300
HapII CCGG 1 cut(s) 96
Hin1II CATG 1 cut(s) 67
HinfI GANTC 3 cut(s) 43, 50, 185
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 42, 294
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 17, 333
HpyCH4V TGCA 3 cut(s) 4, 56, 122
HpyF3I CTNAG 2 cut(s) 48, 293
HpySE526I ACGT 2 cut(s) 17, 333
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 5 cut(s) 8, 98, 165, 169, 289
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 3 cut(s) 60, 109, 223
MaeI CTAG 2 cut(s) 12, 182
MaeII ACGT 2 cut(s) 17, 333
MalI GATC 5 cut(s) 10, 100, 167, 171, 291
MboI GATC 5 cut(s) 8, 98, 165, 169, 289
MboII GAAGA 2 cut(s) 164, 338
MflI RGATCY 3 cut(s) 8, 98, 289
MhlI GDGCHC 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 6 cut(s) 151, 156, 220, 280, 285, 290
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 206, 248
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 265
NdeII GATC 5 cut(s) 8, 98, 165, 169, 289
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 273
NmeAIII GCCGAG 1 cut(s) 310
PfeI GAWTC 2 cut(s) 43, 185
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 3 cut(s) 8, 98, 289
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 206, 248
Sau3AI GATC 5 cut(s) 8, 98, 165, 169, 289
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 274
SetI ASST 3 cut(s) 20, 199, 336
SspMI CTAG 2 cut(s) 12, 182
TaiI ACGT 2 cut(s) 20, 336
TaqI TCGA 2 cut(s) 71, 168
TfiI GAWTC 2 cut(s) 43, 185
Tru1I TTAA 2 cut(s) 206, 248
Tru9I TTAA 2 cut(s) 206, 248
TspDTI ATGAA 1 cut(s) 371
TspGWI ACGGA 1 cut(s) 375
VspI ATTAAT 1 cut(s) 248
XspI CTAG 2 cut(s) 12, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.