Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

80805706 .. 80806647

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG471400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCATGGCTAAGGCCGTGAATGAAATAGCTATGGATGATAAAATCCTCAACGGTTGCACGAGTAACTGGTCTGATCTCCCATTTGATTTATTAGAGTTGATCTTGAAAAGACTTGCACTCGTCGACCTCACATGCTTTAAGCTTGTTTCTCCATCTTGGTATGCCACTGCAAAATCTTATATCTCTGCCCCGTTTTACAGACCCTTGCTTCCTCAAACTGTATGGCTCATGCTCCCTGGAGAACCCAAAAATATAATGCTGGCCGCTTCTTTAGCCTCACAGAGAAAAAGGTTTACACCTTCAAAAACCTGTTTCGAGGCTTTTCTTATTCCGAAACATGTCTGCGTTCGTTACACGTATGGGTGGCTGGTGATGTTTGACTCGACCACGTTCAGAGTCCATCTTCTCATTCCCATCTATAGGGTTAGAATTAAACTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

148

Amino Acids

17.0

Weight (kDa)

9.51

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	24 - 60	1.3e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	3, 264
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflIII	ACRYGT	2 cut(s)	340, 357
AgsI	TTSAA	2 cut(s)	109, 306
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	2 cut(s)	32, 145
AluI	AGCT	2 cut(s)	32, 145
AoxI	GGCC	3 cut(s)	3, 15, 264
AsuHPI	GGTGA	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	61
BccI	CCATC	3 cut(s)	163, 411, 425
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	421
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	6, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	6, 238
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	5, 17, 266
BslI	CCNNNNNNNGG	1 cut(s)	423
BsnI	GGCC	3 cut(s)	5, 17, 266
Bsp143I	GATC	2 cut(s)	76, 102
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	3 cut(s)	5, 17, 266
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	6, 238
BssMI	GATC	2 cut(s)	76, 102
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	56, 223
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	79, 105
BstMBI	GATC	2 cut(s)	76, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	138, 344
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	421
BsuRI	GGCC	3 cut(s)	5, 17, 266
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	264
CviAII	CATG	5 cut(s)	7, 135, 232, 341, 444
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	78, 104
DpnII	GATC	2 cut(s)	76, 102
EaeI	YGGCCR	2 cut(s)	3, 264
Eco130I	CCWWGG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	5 cut(s)	10, 138, 235, 344, 447
FatI	CATG	5 cut(s)	6, 134, 231, 340, 443
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	5, 17, 266
Hin1II	CATG	5 cut(s)	10, 138, 235, 344, 447
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	383, 399
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	127, 297
Hpy188I	TCNGA	3 cut(s)	76, 336, 398
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	127, 297
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	2 cut(s)	56, 223
HpyCH4IV	ACGT	2 cut(s)	359, 392
HpyCH4V	TGCA	3 cut(s)	60, 119, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	2 cut(s)	359, 392
Hsp92II	CATG	5 cut(s)	10, 138, 235, 344, 447
Kzo9I	GATC	2 cut(s)	76, 102
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	6 cut(s)	55, 225, 248, 252, 325, 356
MaeII	ACGT	2 cut(s)	359, 392
MaeIII	GTNAC	2 cut(s)	65, 353
MalI	GATC	2 cut(s)	78, 104
MboI	GATC	2 cut(s)	76, 102
MboII	GAAGA	1 cut(s)	398
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	377, 408
MnlI	CCTC	5 cut(s)	59, 140, 225, 289, 313
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	141, 435
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	76, 102
NlaIII	CATG	5 cut(s)	10, 138, 235, 344, 447
NspI	RCATGY	2 cut(s)	138, 344
PciI	ACATGT	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	377, 407
PpsI	GAGTC	2 cut(s)	377, 407
Ppu21I	YACGTR	1 cut(s)	360
PscI	ACATGT	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	141, 435
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	76, 102
SchI	GAGTC	2 cut(s)	377, 408
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	8 cut(s)	34, 132, 147, 296, 304, 314, 362, 395
SfcI	CTRYAG	1 cut(s)	421
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	56, 223
TaiI	ACGT	2 cut(s)	362, 395
TaqI	TCGA	3 cut(s)	126, 318, 386
TasI	AATT	1 cut(s)	432
TauI	GCSGC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	141, 435
Tru9I	TTAA	2 cut(s)	141, 435
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	175
XceI	RCATGY	2 cut(s)	138, 344
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.