Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

78696827 .. 78697603

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCGAGGAAGACAAAGTCGTCGGTTGTGACTGCAACATTATTACTACGAAAACAACACCGAACTGGTCTGGCCTCCAATTAGAGCTATTAGAGTTGATCTTGAAAAGACTTGCTCTCGTTGACATCGCTCGCTTTAAATTAGTTTCTTCATCCTGGTATGCCGCTGCAAATTCTTATCTCTCTAGCCCGGTTTACAAACCCCTGGTGCCTCAAACTCCATGGCTCAAGCTCCCTCGAGAACGTAGTGACGTTGATGCTGGCCGTTTCTTTAGCCTCTCAGAGAAAAAGGTTTACACCTTCAAGAACCTGTTTGAAGGCTTCGGTAAACATGAAAGGTGTTTGGTGGGTTCGTCACATGGGTGGCTGGTGATGTGGGACTTGAACGTATACAGAGTACACCTTTTTAACCCTATCTCTAGGGTTAGAATGATACTTCCACCTCTAGGGTTTCAGCCCATGCATAGTGTTCTCAAAGTTCTCCTATCCTCGGACCCGTCTTGCAACAATTCCTTTTACATTGTGGTAATCTACGTAAAAAAGGTCGAGACAAAAATAGCATTCCATAAGCATGGCGATGCTGGAAACAAAACGACTTGGACTGACTTGGATGGTGTAGATGGAGGATTTGATAGGATCATTTTCCACAAGAACCTTCTATTTGCGTTTTCCTTGGGAGACTCAAAATCAATTTCAGTACGTTTGGGATTTCGGGGGAACCTATCCCATCAAAACCATGGATTTGCAACCTCCGGAGAGGGAGGTAGAACAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

258

Amino Acids

29.04

Weight (kDa)

9.32

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 59	2.7e-06	F-box domain
Beta-prop_KIB1-4	PF03478	90 - 225	3.6e-22	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	390
AccIII	TCCGGA	1 cut(s)	752
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	2 cut(s)	3, 262
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	2 cut(s)	399, 699
AfiI	CCNNNNNNNGG	2 cut(s)	446, 490
AgsI	TTSAA	4 cut(s)	106, 304, 317, 385
AjnI	CCWGG	2 cut(s)	155, 204
AleI	CACNNNNGTG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	88, 232
AluI	AGCT	2 cut(s)	88, 232
Alw26I	GTCTC	2 cut(s)	542, 672
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	752
AoxI	GGCC	3 cut(s)	3, 73, 262
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	493
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	3 cut(s)	605, 614, 735
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	157, 206
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	542, 672
BfaI	CTAG	3 cut(s)	186, 420, 446
BisI	GCNGC	2 cut(s)	165, 168
BlsI	GCNGC	2 cut(s)	166, 169
Bme1390I	CCNGG	3 cut(s)	157, 191, 206
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	3 cut(s)	210, 495, 719
BmrFI	CCNGG	3 cut(s)	157, 191, 206
BmsI	GCATC	2 cut(s)	247, 568
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	535
BsaJI	CCNNGG	6 cut(s)	6, 204, 221, 489, 672, 736
BsaWI	WCCGGW	1 cut(s)	752
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 490
Bse1I	ACTGG	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	752
BseBI	CCWGG	2 cut(s)	157, 206
BseDI	CCNNGG	6 cut(s)	6, 204, 221, 489, 672, 736
BseGI	GGATG	2 cut(s)	152, 616
BseLI	CCNNNNNNNGG	2 cut(s)	446, 490
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	3 cut(s)	5, 75, 264
BshNI	GGYRCC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	191, 753
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	446, 490
BsmAI	GTCTC	2 cut(s)	542, 672
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	5, 75, 264
BsoBI	CYCGRG	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	752
Bsp143I	GATC	2 cut(s)	99, 636
Bsp19I	CCATGG	2 cut(s)	221, 736
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	5, 75, 264
BspCNI	CTCAG	1 cut(s)	293
BspEI	TCCGGA	1 cut(s)	752
BspLI	GGNNCC	3 cut(s)	210, 495, 719
BspPI	GGATC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	6 cut(s)	6, 204, 221, 489, 672, 736
BssMI	GATC	2 cut(s)	99, 636
BssNAI	GTATAC	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	221, 672, 736
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	157, 206
BstBAI	YACGTR	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	133, 262
BstDEI	CTNAG	1 cut(s)	280
BstDSI	CCRYGG	2 cut(s)	221, 736
BstF5I	GGATG	2 cut(s)	152, 616
BstKTI	GATC	2 cut(s)	102, 639
BstMAI	GTCTC	2 cut(s)	542, 672
BstMBI	GATC	2 cut(s)	99, 636
BstNI	CCWGG	2 cut(s)	157, 206
BstSCI	CCNGG	3 cut(s)	155, 189, 204
BstSNI	TACGTA	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstZ17I	GTATAC	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	5, 75, 264
BtgI	CCRYGG	2 cut(s)	221, 736
BtgZI	GCGATG	2 cut(s)	112, 591
BtsCI	GGATG	2 cut(s)	152, 616
Cac8I	GCNNGC	2 cut(s)	133, 262
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	398, 698
CviAII	CATG	6 cut(s)	222, 332, 359, 460, 572, 737
CviQI	GTAC	2 cut(s)	398, 698
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	2 cut(s)	101, 638
DpnII	GATC	2 cut(s)	99, 636
DraI	TTTAAA	1 cut(s)	139
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	3, 262
Eco105I	TACGTA	1 cut(s)	535
Eco130I	CCWWGG	3 cut(s)	221, 672, 736
Eco47I	GGWCC	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	155, 204
EcoT14I	CCWWGG	3 cut(s)	221, 672, 736
EcoT22I	ATGCAT	1 cut(s)	465
ErhI	CCWWGG	3 cut(s)	221, 672, 736
FaeI	CATG	6 cut(s)	225, 335, 362, 463, 575, 740
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	6 cut(s)	221, 331, 358, 459, 571, 736
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	165, 168
FokI	GGATG	2 cut(s)	139, 623
Fsp4HI	GCNGC	2 cut(s)	165, 168
FspBI	CTAG	3 cut(s)	186, 420, 446
GluI	GCNGC	2 cut(s)	165, 168
HaeIII	GGCC	3 cut(s)	5, 75, 264
HapII	CCGG	2 cut(s)	191, 753
Hin1II	CATG	6 cut(s)	225, 335, 362, 463, 575, 740
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	680
HpaII	CCGG	2 cut(s)	191, 753
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	6 cut(s)	124, 196, 295, 329, 391, 400
Hpy188I	TCNGA	2 cut(s)	283, 493
Hpy188III	TCNNGA	5 cut(s)	103, 239, 304, 547, 753
Hpy8I	GTNNAC	6 cut(s)	124, 196, 295, 329, 391, 400
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	310, 311, 665
HpyCH4IV	ACGT	6 cut(s)	244, 252, 387, 534, 700, 773
HpyCH4V	TGCA	5 cut(s)	36, 170, 463, 504, 746
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	6 cut(s)	244, 252, 387, 534, 700, 773
Hsp92II	CATG	6 cut(s)	225, 335, 362, 463, 575, 740
Kpn2I	TCCGGA	1 cut(s)	752
Kzo9I	GATC	2 cut(s)	99, 636
LmnI	GCTCC	1 cut(s)	237
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	247, 568
MaeI	CTAG	3 cut(s)	186, 420, 446
MaeII	ACGT	6 cut(s)	244, 252, 387, 534, 700, 773
MaeIII	GTNAC	3 cut(s)	29, 248, 354
MalI	GATC	2 cut(s)	101, 638
MboI	GATC	2 cut(s)	99, 636
MboII	GAAGA	2 cut(s)	23, 141
MluCI	AATT	5 cut(s)	80, 140, 172, 508, 690
MlyI	GAGTC	1 cut(s)	674
Mph1103I	ATGCAT	1 cut(s)	465
MroI	TCCGGA	1 cut(s)	752
MseI	TTAA	2 cut(s)	138, 408
MslI	CAYNNNNRTG	3 cut(s)	361, 570, 576
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	2 cut(s)	191, 753
MspR9I	CCNGG	3 cut(s)	157, 191, 206
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	2 cut(s)	157, 206
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	2 cut(s)	221, 736
NdeII	GATC	2 cut(s)	99, 636
NlaIII	CATG	6 cut(s)	225, 335, 362, 463, 575, 740
NlaIV	GGNNCC	3 cut(s)	210, 495, 719
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	29, 248, 354
NsiI	ATGCAT	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	237
PctI	GAATGC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	166, 169
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
Ppu21I	YACGTR	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	155, 204
PspGI	CCWGG	2 cut(s)	155, 204
PspN4I	GGNNCC	3 cut(s)	210, 495, 719
PspPI	GGNCC	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	399, 699
RsaNI	GTAC	2 cut(s)	398, 698
RseI	CAYNNNNRTG	3 cut(s)	361, 570, 576
SaqAI	TTAA	2 cut(s)	138, 408
SatI	GCNGC	2 cut(s)	165, 168
Sau3AI	GATC	2 cut(s)	99, 636
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	3 cut(s)	157, 191, 206
SfaNI	GCATC	2 cut(s)	247, 568
Sfr274I	CTCGAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	493
SlaI	CTCGAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	3 cut(s)	361, 570, 576
SmlI	CTYRAG	2 cut(s)	227, 237
SmoI	CTYRAG	2 cut(s)	227, 237
SnaBI	TACGTA	1 cut(s)	535
Sse9I	AATT	5 cut(s)	80, 140, 172, 508, 690
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	3 cut(s)	186, 420, 446
StyD4I	CCNGG	3 cut(s)	155, 189, 204
StyI	CCWWGG	3 cut(s)	221, 672, 736
TaiI	ACGT	6 cut(s)	247, 255, 390, 537, 703, 776
TaqI	TCGA	2 cut(s)	238, 546
TasI	AATT	5 cut(s)	80, 140, 172, 508, 690
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	138, 408
Tru9I	TTAA	2 cut(s)	138, 408
TseFI	GTSAC	3 cut(s)	29, 248, 354
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	3 cut(s)	29, 248, 354
TspDTI	ATGAA	2 cut(s)	141, 348
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734
XhoI	CTCGAG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	3 cut(s)	186, 420, 446
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.