Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

27753022 .. 27754224

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTTTCCGGTAACTCCTGCACGAAAAAAACAACCCATCAACCAAACTGGTCCGAGCTCCCACCTGAACTCCTAGAGCTCGTCATGAAAAGCCTTAATGTCGTCGACATAATTCACATCAAAGCTGTTTGCACTTCATGGATGTACGTCGTAAAACACTATCCGCTGCCTCAATCTCCATGGCTCATGCTCCCCAGTAATGATCAAAACAACGTCACCTCTCGCTGCTTCTATGATGTTGCAGGCAAACCTGGTGCAAGCCTCCGACTCCCGGAGATCGGAACCGCCGCTGAGATTTCTACCTCCTTCAACATGGACGTTCATGTTTGCATTACTTATGCAGACGTAGTATTAGTAAGGTTGTTCTTTCTTCCGACCCAGCTCGGAACAACAATTTCACGGCGGCTGCCGTGTTTAACGAGAAACAAAAATCAGGGCTCGCGTACTCTCTTTGCGCTTGGCCGGAAGGGATCGTTGATTCATGTTTGGAACTTGAAAGGAAATCCCTTTGTCACGAAAACCATTACGTTTGAACCCTGCGGGAGAGAAACGGTGGCCAGAGTTGTCGAGCGCTTTATCTATGGAAGATATGAGAGTTATTTGGTCGAGAGTTTGGGTGAGATATTGTTAGTAGTGCGGACTATATCGCTAAGATATTCCCCCTATAGAACCGTTAGCTTTAGGGTTTACAAGGTGAACGTGACGAAGTCGAAATTGGAGAAGGTGGAGTGTTTGGATGACCGGGTTTTATTTGTGGGCGGAAATCAATCGGTGTCGTTATCAACTCGGGATTTTTCGGCACTTGAACTGAATTCTGTTTGCTTCACGGATGATGGATGGTCTATGATGAATGTTAATTACAATGGTCTTGATAAGGGTGATTATGGTGGCCATGATCTTGGAGTATACAGTTTAGAAGATAAAGTTGTGAAGCGATTTGATGAAATTGATGATGAGCGGATCGTTTATCCTCCACCCTTTTGGATTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

332

Amino Acids

37.59

Weight (kDa)

8.33

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 54	7.6e-07	F-box domain
Beta-prop_KIB1-4	PF03478	149 - 304	1.8e-23	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	958
AccI	GTMKAC	2 cut(s)	105, 906
AccII	CGCG	1 cut(s)	442
AciI	CCGC	8 cut(s)	164, 285, 288, 403, 540, 637, 759, 958
AclWI	GGATC	2 cut(s)	478, 968
AcoI	YGGCCR	3 cut(s)	460, 555, 889
AcsI	RAATTY	1 cut(s)	811
AfaI	GTAC	2 cut(s)	146, 445
AfeI	AGCGCT	1 cut(s)	572
AfiI	CCNNNNNNNGG	2 cut(s)	271, 278
AgsI	TTSAA	4 cut(s)	310, 496, 533, 806
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	5 cut(s)	58, 79, 125, 382, 678
AluI	AGCT	5 cut(s)	58, 79, 125, 382, 678
Alw21I	GWGCWC	2 cut(s)	60, 81
AlwI	GGATC	2 cut(s)	478, 968
Ama87I	CYCGRG	1 cut(s)	786
Aor51HI	AGCGCT	1 cut(s)	572
AoxI	GGCC	3 cut(s)	460, 555, 889
ApeKI	GCWGC	3 cut(s)	166, 225, 406
ApoI	RAATTY	1 cut(s)	811
AspLEI	GCGC	2 cut(s)	457, 573
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	2 cut(s)	272, 743
AsuHPI	GGTGA	4 cut(s)	208, 629, 706, 890
AvaI	CYCGRG	1 cut(s)	786
AvaII	GGWCC	1 cut(s)	51
BalI	TGGCCA	2 cut(s)	557, 891
BanII	GRGCYC	3 cut(s)	60, 81, 440
Bbv12I	GWGCWC	2 cut(s)	60, 81
BbvI	GCAGC	3 cut(s)	153, 212, 393
BccI	CCATC	3 cut(s)	45, 827, 831
BceAI	ACGGC	2 cut(s)	394, 416
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	272, 743
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	664
BfoI	RGCGCY	1 cut(s)	574
BisI	GCNGC	5 cut(s)	167, 226, 288, 404, 407
BlsI	GCNGC	5 cut(s)	168, 227, 289, 405, 408
Bme1390I	CCNGG	3 cut(s)	252, 272, 743
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	3 cut(s)	252, 272, 743
BmrI	ACTGGG	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	189
BpuMI	CCSGG	2 cut(s)	272, 743
BsaJI	CCNNGG	1 cut(s)	179
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 278
Bse1I	ACTGG	2 cut(s)	53, 195
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	4 cut(s)	147, 742, 835, 842
BseLI	CCNNNNNNNGG	2 cut(s)	271, 278
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	53, 195
BseXI	GCAGC	3 cut(s)	153, 212, 393
BseYI	CCCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	3 cut(s)	462, 557, 891
BsiHKAI	GWGCWC	2 cut(s)	60, 81
BsiHKCI	CYCGRG	1 cut(s)	786
BsiSI	CCGG	4 cut(s)	9, 272, 463, 742
BslI	CCNNNNNNNGG	2 cut(s)	271, 278
BsnI	GGCC	3 cut(s)	462, 557, 891
BsoBI	CYCGRG	1 cut(s)	786
Bsp1286I	GDGCHC	3 cut(s)	60, 81, 440
Bsp143I	GATC	5 cut(s)	202, 276, 470, 895, 960
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	8 cut(s)	164, 285, 288, 403, 540, 637, 759, 958
BspANI	GGCC	3 cut(s)	462, 557, 891
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	2 cut(s)	478, 968
BsrBI	CCGCTC	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	53, 195
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	5 cut(s)	202, 276, 470, 895, 960
BssNAI	GTATAC	1 cut(s)	907
BssT1I	CCWWGG	1 cut(s)	179
Bst1107I	GTATAC	1 cut(s)	907
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	553, 673, 911
BstC8I	GCNNGC	3 cut(s)	244, 259, 440
BstDEI	CTNAG	2 cut(s)	291, 650
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	147, 742, 835, 842
BstFNI	CGCG	1 cut(s)	442
BstH2I	RGCGCY	1 cut(s)	574
BstHHI	GCGC	2 cut(s)	457, 573
BstKTI	GATC	5 cut(s)	205, 279, 473, 898, 963
BstMBI	GATC	5 cut(s)	202, 276, 470, 895, 960
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	3 cut(s)	250, 270, 741
BstSFI	CTRYAG	1 cut(s)	664
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	153, 212, 393
BstXI	CCANNNNNNTGG	2 cut(s)	899, 981
BstZ17I	GTATAC	1 cut(s)	907
BsuRI	GGCC	3 cut(s)	462, 557, 891
BtgI	CCRYGG	1 cut(s)	179
BtsCI	GGATG	4 cut(s)	147, 742, 835, 842
Cac8I	GCNNGC	3 cut(s)	244, 259, 440
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	2 cut(s)	457, 573
Cfr13I	GGNCC	1 cut(s)	51
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	145, 444
CviAII	CATG	8 cut(s)	85, 138, 180, 187, 313, 323, 482, 893
CviQI	GTAC	2 cut(s)	145, 444
DdeI	CTNAG	2 cut(s)	291, 650
DpnI	GATC	5 cut(s)	204, 278, 472, 897, 962
DpnII	GATC	5 cut(s)	202, 276, 470, 895, 960
EaeI	YGGCCR	3 cut(s)	460, 555, 889
EciI	GGCGGA	1 cut(s)	774
Ecl136II	GAGCTC	2 cut(s)	58, 79
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	3 cut(s)	60, 81, 440
Eco47I	GGWCC	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	572
Eco53kI	GAGCTC	2 cut(s)	58, 79
Eco88I	CYCGRG	1 cut(s)	786
EcoICRI	GAGCTC	2 cut(s)	58, 79
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	3 cut(s)	60, 81, 440
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	8 cut(s)	88, 141, 183, 190, 316, 326, 485, 896
FatI	CATG	8 cut(s)	84, 137, 179, 186, 312, 322, 481, 892
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	2 cut(s)	105, 906
Fnu4HI	GCNGC	5 cut(s)	167, 226, 288, 404, 407
FokI	GGATG	4 cut(s)	154, 749, 842, 849
FriOI	GRGCYC	3 cut(s)	60, 81, 440
Fsp4HI	GCNGC	5 cut(s)	167, 226, 288, 404, 407
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	2 cut(s)	456, 572
GluI	GCNGC	5 cut(s)	167, 226, 288, 404, 407
GsaI	CCCAGC	1 cut(s)	382
HaeII	RGCGCY	1 cut(s)	574
HaeIII	GGCC	3 cut(s)	462, 557, 891
HapII	CCGG	4 cut(s)	9, 272, 463, 742
HhaI	GCGC	2 cut(s)	457, 573
Hin1II	CATG	8 cut(s)	88, 141, 183, 190, 316, 326, 485, 896
Hin6I	GCGC	2 cut(s)	455, 571
HinP1I	GCGC	2 cut(s)	455, 571
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	267, 478, 985
HpaII	CCGG	4 cut(s)	9, 272, 463, 742
HphI	GGTGA	4 cut(s)	208, 629, 706, 890
Hpy166II	GTNNAC	4 cut(s)	106, 688, 697, 907
Hpy188I	TCNGA	5 cut(s)	55, 266, 281, 375, 386
Hpy188III	TCNNGA	5 cut(s)	85, 514, 607, 788, 869
Hpy8I	GTNNAC	4 cut(s)	106, 688, 697, 907
Hpy99I	CGWCG	2 cut(s)	107, 152
HpyAV	CCTTC	3 cut(s)	316, 460, 715
HpyCH4III	ACNGT	3 cut(s)	553, 673, 911
HpyCH4IV	ACGT	6 cut(s)	147, 213, 318, 345, 527, 699
HpyCH4V	TGCA	6 cut(s)	21, 132, 242, 257, 330, 341
HpyF3I	CTNAG	2 cut(s)	291, 650
HpySE526I	ACGT	6 cut(s)	147, 213, 318, 345, 527, 699
Hsp92II	CATG	8 cut(s)	88, 141, 183, 190, 316, 326, 485, 896
HspAI	GCGC	2 cut(s)	455, 571
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	202, 276, 470, 895, 960
LmnI	GCTCC	2 cut(s)	63, 195
Lsp1109I	GCAGC	3 cut(s)	153, 212, 393
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	6 cut(s)	147, 213, 318, 345, 527, 699
MaeIII	GTNAC	4 cut(s)	11, 214, 511, 700
MalI	GATC	5 cut(s)	204, 278, 472, 897, 962
MbiI	CCGCTC	1 cut(s)	958
MboI	GATC	5 cut(s)	202, 276, 470, 895, 960
MboII	GAAGA	4 cut(s)	362, 597, 929, 980
MhlI	GDGCHC	3 cut(s)	60, 81, 440
MlsI	TGGCCA	2 cut(s)	557, 891
MluCI	AATT	6 cut(s)	111, 393, 713, 811, 856, 945
MluNI	TGGCCA	2 cut(s)	557, 891
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	2 cut(s)	289, 398
MnlI	CCTC	5 cut(s)	180, 229, 272, 313, 981
Mox20I	TGGCCA	2 cut(s)	557, 891
MscI	TGGCCA	2 cut(s)	557, 891
MseI	TTAA	3 cut(s)	96, 416, 855
Msp20I	TGGCCA	2 cut(s)	557, 891
MspA1I	CMGCKG	2 cut(s)	166, 290
MspI	CCGG	4 cut(s)	9, 272, 463, 742
MspR9I	CCNGG	3 cut(s)	252, 272, 743
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	442
NciI	CCSGG	2 cut(s)	272, 743
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	5 cut(s)	202, 276, 470, 895, 960
NlaIII	CATG	8 cut(s)	88, 141, 183, 190, 316, 326, 485, 896
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	3 cut(s)	214, 511, 700
PagI	TCATGA	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	478, 985
PflFI	GACNNNGTC	1 cut(s)	706
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	5 cut(s)	168, 227, 289, 405, 408
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp124BI	GAGCTC	2 cut(s)	60, 81
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	706
RsaI	GTAC	2 cut(s)	146, 445
RsaNI	GTAC	2 cut(s)	145, 444
SacI	GAGCTC	2 cut(s)	60, 81
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	96, 416, 855
SatI	GCNGC	5 cut(s)	167, 226, 288, 404, 407
Sau3AI	GATC	5 cut(s)	202, 276, 470, 895, 960
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	3 cut(s)	252, 272, 743
SduI	GDGCHC	3 cut(s)	60, 81, 440
SexAI	ACCWGGT	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	664
SinI	GGWCC	1 cut(s)	51
Sse9I	AATT	6 cut(s)	111, 393, 713, 811, 856, 945
SsiI	CCGC	8 cut(s)	164, 285, 288, 403, 540, 637, 759, 958
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	2 cut(s)	60, 81
StyD4I	CCNGG	3 cut(s)	250, 270, 741
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	553, 673, 911
TaiI	ACGT	6 cut(s)	150, 216, 321, 348, 530, 702
TaqI	TCGA	4 cut(s)	105, 567, 606, 710
TasI	AATT	6 cut(s)	111, 393, 713, 811, 856, 945
TauI	GCSGC	2 cut(s)	290, 406
TfiI	GAWTC	2 cut(s)	478, 985
Tru1I	TTAA	3 cut(s)	96, 416, 855
Tru9I	TTAA	3 cut(s)	96, 416, 855
TseFI	GTSAC	3 cut(s)	214, 511, 700
TseI	GCWGC	3 cut(s)	166, 225, 406
Tsp45I	GTSAC	3 cut(s)	214, 511, 700
TspDTI	ATGAA	6 cut(s)	101, 126, 311, 470, 863, 957
TspGWI	ACGGA	1 cut(s)	842
Tth111I	GACNNNGTC	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	811
XmiI	GTMKAC	2 cut(s)	105, 906
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.