Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011680.1

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

35836 .. 36555

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011680.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgggaaaacattgtatccaaccatcaagacttgcattctacaaccgtggagacgaggaatggaccgacttaaatggtgagcatcaagaatattgtgacattatattccacaatgacaaattatttgcattggccgacaatggatgtgttgaagcttgggacttcaggaaaccctctcccaataagatcataaatcttcaacctgcttctgccaaagagttggatctggattacacttccaatcgcgacaagttttccacaaatacttacttggtggagtcatcggatgagataatgtctgtggtgcggtgtatagggaactttgtcaatgaggagggcaaagctatccatgagatagacgttcctgacgagcccaacagtccttgtccctataggacattgcaattttatgtcttcaagctaaattttgcggcgaacaagtgggagaaagtggagtgtttgccgaactgtgctttgtttttgggcggtagccaatcaatatcattgtccactaaagatgtttcagggtgcgaagaaaactcaatttacttcacagatgatcgttgggatgagatagaactgcttggtgatactgactcctatggcggccatgacatgggagtgtacaacttggaagacaaagtcgtgaagcaattttatccatttgataaatggagaattgatccaccacctttttggattgttcctagtccatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

239

Amino Acids

27.54

Weight (kDa)

4.53

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccII	CGCG	1 cut(s)	246
AciI	CCGC	4 cut(s)	307, 431, 486, 606
AclWI	GGATC	2 cut(s)	231, 677
AcoI	YGGCCR	2 cut(s)	132, 607
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	148
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	152, 200, 418
AluBI	AGCT	3 cut(s)	155, 344, 421
AluI	AGCT	3 cut(s)	155, 344, 421
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	231, 677
AoxI	GGCC	2 cut(s)	132, 607
ApoI	RAATTY	1 cut(s)	424
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	89, 599
AvaII	GGWCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	2 cut(s)	406, 642
BccI	CCATC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	432, 607
BlsI	GCNGC	2 cut(s)	433, 608
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	2 cut(s)	406, 642
BsaJI	CCNNGG	2 cut(s)	46, 713
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	46, 713
BseGI	GGATG	3 cut(s)	149, 292, 574
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	134, 609
BslFI	GGGAC	2 cut(s)	173, 372
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	173, 372
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	134, 609
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	186, 223, 559, 682
Bsp19I	CCATGG	1 cut(s)	713
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	4 cut(s)	307, 431, 486, 606
BspANI	GGCC	2 cut(s)	134, 609
BspFNI	CGCG	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	231, 677
BsrDI	GCAATG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	624
BssECI	CCNNGG	2 cut(s)	46, 713
BssMI	GATC	4 cut(s)	186, 223, 559, 682
BssT1I	CCWWGG	1 cut(s)	713
Bst4CI	ACNGT	3 cut(s)	47, 380, 470
BstAUI	TGTACA	1 cut(s)	624
BstDSI	CCRYGG	2 cut(s)	46, 713
BstF5I	GGATG	3 cut(s)	149, 292, 574
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	189, 226, 562, 685
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	186, 223, 559, 682
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	246
BstV2I	GAAGAC	2 cut(s)	406, 642
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	2 cut(s)	220, 696
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	134, 609
BtgI	CCRYGG	2 cut(s)	46, 713
BtsCI	GGATG	3 cut(s)	149, 292, 574
BtuMI	TCGCGA	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	4 cut(s)	350, 611, 616, 714
CviJI	RGCY	7 cut(s)	134, 155, 344, 373, 421, 492, 609
CviKI_1	RGCY	7 cut(s)	134, 155, 344, 373, 421, 492, 609
CviQI	GTAC	1 cut(s)	625
DpnI	GATC	4 cut(s)	188, 225, 561, 684
DpnII	GATC	4 cut(s)	186, 223, 559, 682
EaeI	YGGCCR	2 cut(s)	132, 607
Eco130I	CCWWGG	1 cut(s)	713
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	713
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	713
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	4 cut(s)	353, 614, 619, 717
FaqI	GGGAC	2 cut(s)	173, 372
FatI	CATG	4 cut(s)	349, 610, 615, 713
Fnu4HI	GCNGC	2 cut(s)	432, 607
FokI	GGATG	3 cut(s)	156, 299, 581
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	2 cut(s)	432, 607
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	2 cut(s)	432, 607
HaeIII	GGCC	2 cut(s)	134, 609
Hin1II	CATG	4 cut(s)	353, 614, 619, 717
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	2 cut(s)	278, 596
HphI	GGTGA	2 cut(s)	89, 599
Hpy166II	GTNNAC	2 cut(s)	510, 625
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	7 cut(s)	27, 86, 166, 227, 245, 365, 646
Hpy8I	GTNNAC	2 cut(s)	510, 625
HpyCH4III	ACNGT	3 cut(s)	47, 380, 470
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	35, 128, 403
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	353, 614, 619, 717
Kzo9I	GATC	4 cut(s)	186, 223, 559, 682
LpnPI	CCDG	5 cut(s)	151, 212, 216, 378, 510
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	4 cut(s)	188, 225, 561, 684
MboI	GATC	4 cut(s)	186, 223, 559, 682
MboII	GAAGA	4 cut(s)	188, 406, 545, 647
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	6 cut(s)	119, 404, 424, 543, 653, 678
MlyI	GAGTC	2 cut(s)	287, 590
MmeI	TCCRAC	2 cut(s)	43, 201
MnlI	CCTC	4 cut(s)	49, 184, 325, 328
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	620
Mva1269I	GAATGC	1 cut(s)	35
MvnI	CGCG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	713
NdeII	GATC	4 cut(s)	186, 223, 559, 682
NlaIII	CATG	4 cut(s)	353, 614, 619, 717
NmuCI	GTSAC	1 cut(s)	95
NruI	TCGCGA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	35
PflFI	GACNNNGTC	1 cut(s)	641
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	433, 608
PleI	GAGTC	2 cut(s)	286, 590
PpsI	GAGTC	2 cut(s)	286, 590
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	641
RruI	TCGCGA	1 cut(s)	246
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	432, 607
Sau3AI	GATC	4 cut(s)	186, 223, 559, 682
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	287, 590
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	6 cut(s)	157, 205, 346, 363, 423, 694
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	620
Sse9I	AATT	6 cut(s)	119, 404, 424, 543, 653, 678
SsiI	CCGC	4 cut(s)	307, 431, 486, 606
SspI	AATATT	1 cut(s)	92
SspMI	CTAG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	3 cut(s)	47, 380, 470
TaiI	ACGT	1 cut(s)	363
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	6 cut(s)	119, 404, 424, 543, 653, 678
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	2 cut(s)	434, 609
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
Tth111I	GACNNNGTC	1 cut(s)	641
Van91I	CCANNNNNTGG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	669, 693
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.