Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

23322071 .. 23323360

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1228400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTTCGGAAAAGTATACCACCGTCGCCACATAAAGAGAAGAACAATATCGCCAAATTGGTCTGACCTCCGATCTGAAATATTAGAGTTAATAATGAAAAATCTCTCCTTCCTCGACATGCTTCGATTTAAATCCGTTTGTTCTTCTTGGAATCAAGCCATGAAATGTTATTATGCCACATCGTTTCCGCAAACTTCTCCATGGCTAATGCTCCCTAGTGATCAAGAAAACGTTCATAACGATATTAGGACTCGGTGTTTCTACAGCCTTAAAGAAGATGAAGTCTACACTGTCAAGAACGTGTTACAAGAATGTCATGATGATTGGTGTGTTGGTTCATCACACGGTTGGCTGGTGATCATGGACAACAACGCAGTCCCACATCTTCTCAATCCCGTTTCGCGGCGTAGAATTCAACTCCCAAAAATTTGGTCTCTGCAAAATTGCCCCAGCAATCCTGACAGCATTGAACAATTGCGCATGACTTTTATTTGCAAAGCTGTTCTCTCCTCCGACCCTTCTTGCAACGGCAACTTTGTTGTTGTGATAATTTATGGTGTGTTATCTTCAAAACTTGGATTTTGTAAGTATGGGGAGGAGGGCAGCAGATGGAGAGGCTTAGAAGGTGTGCATGGAGAATATTGTGATGTTATTTTTCACAAGGAGAAGTTGTATGCATTGGCGGGGGATGGCTCGGTCGAAGTGTGGAGGGACTTCAACAACTCCTCTACTCCCATCAAAACTATGAATCTTCATCAGCCATATTCAGAGCTAGAAAATGTAAATCATATAATTAAGGACTTTTCCAAGGACAAATATTCTACTCAGACGTACTTGGTGGAGTCTTTGGGTGAGATATTGTCCGTGGGGCGAGTTATCGGCAACTTTGTCAACCATGAGGGCACGGCTATTCTTGAGGGGGATCTAGATGAGTATGGTTACTTCTGTCCCTACAGAACATTGCAGTTTTATGTCCTCAAGTTGAATTTCACAGCCAATAAGTGGGAGAAAATTGAATCTTTGCGCGGTCGAGCTTTATTTCTGGGCGGGAATCAATCAATGTCAGTGTCGACTCCCGATTTTCTAGAATGCGAAGAAAACTCAATTTACTTCACGGACGATCGATGGGACGAGATCAATTTCAACGCCGGCAGTGTTGACGACAATGGTTATGGTGGTCATGATGTAGGAATATACAACATAGGCAACAAAGTTGTGAAGCCAATTTACCAATTTGAGAAGTGGAGAGTTGATCCACCACCCTTTTGGATAGTTCCTAACCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

430

Amino Acids

49.59

Weight (kDa)

5.87

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	87 - 400	3.7e-56	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	479
AccB7I	CCANNNNNTGG	1 cut(s)	1002
AccI	GTMKAC	3 cut(s)	15, 285, 1070
AccII	CGCG	2 cut(s)	403, 1026
AciI	CCGC	5 cut(s)	188, 403, 683, 1026, 1047
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	2 cut(s)	930, 1247
AcsI	RAATTY	3 cut(s)	411, 426, 985
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	2 cut(s)	402, 1002
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	7 cut(s)	416, 470, 570, 718, 985, 1016, 1144
AluBI	AGCT	3 cut(s)	500, 772, 1034
AluI	AGCT	3 cut(s)	500, 772, 1034
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	2 cut(s)	930, 1247
ApeKI	GCWGC	1 cut(s)	603
ApoI	RAATTY	3 cut(s)	411, 426, 985
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	480, 1026
AsuHPI	GGTGA	2 cut(s)	367, 863
BaeGI	GKGCMC	1 cut(s)	905
BarI	GAAGNNNNNNTAC	4 cut(s)	926, 958, 1211, 1243
BbvI	GCAGC	1 cut(s)	615
BccI	CCATC	4 cut(s)	603, 683, 743, 1119
BceAI	ACGGC	2 cut(s)	544, 921
BclI	TGATCA	2 cut(s)	220, 357
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	4 cut(s)	216, 773, 926, 1085
BfmI	CTRYAG	2 cut(s)	262, 952
BisI	GCNGC	2 cut(s)	404, 604
BlsI	GCNGC	2 cut(s)	405, 605
BpuEI	CTTGAG	2 cut(s)	935, 962
Bsa29I	ATCGAT	1 cut(s)	1123
BsaBI	GATNNNNATC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	200, 807, 864, 1283
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 1002
Bse118I	RCCGGY	1 cut(s)	1148
Bse3DI	GCAATG	1 cut(s)	959
Bse8I	GATNNNNATC	1 cut(s)	130
BseCI	ATCGAT	1 cut(s)	1123
BseDI	CCNNGG	4 cut(s)	200, 807, 864, 1283
BseGI	GGATG	1 cut(s)	694
BseJI	GATNNNNATC	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	402, 1002
BseMI	GCAATG	1 cut(s)	959
BseMII	CTCAG	1 cut(s)	839
BseRI	GAGGAG	3 cut(s)	499, 611, 715
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	1 cut(s)	615
BseYI	CCCAGC	1 cut(s)	449
Bsh1236I	CGCG	2 cut(s)	403, 1026
Bsh1285I	CGRYCG	3 cut(s)	699, 1030, 1123
BshVI	ATCGAT	1 cut(s)	1123
BsiEI	CGRYCG	3 cut(s)	699, 1030, 1123
BsiSI	CCGG	1 cut(s)	1149
BslFI	GGGAC	4 cut(s)	362, 725, 933, 1142
BslI	CCNNNNNNNGG	2 cut(s)	402, 1002
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	4 cut(s)	362, 725, 933, 1142
BsmI	GAATGC	1 cut(s)	1094
Bso31I	GGTCTC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
Bsp19I	CCATGG	2 cut(s)	200, 1283
BspACI	CCGC	5 cut(s)	188, 403, 683, 1026, 1047
BspCNI	CTCAG	1 cut(s)	838
BspDI	ATCGAT	1 cut(s)	1123
BspFNI	CGCG	2 cut(s)	403, 1026
BspHI	TCATGA	2 cut(s)	316, 1180
BspPI	GGATC	2 cut(s)	930, 1247
BspTNI	GGTCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	959
BsrFI	RCCGGY	1 cut(s)	1148
BssAI	RCCGGY	1 cut(s)	1148
BssECI	CCNNGG	4 cut(s)	200, 807, 864, 1283
BssMI	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
BssNAI	GTATAC	1 cut(s)	16
BssT1I	CCWWGG	3 cut(s)	200, 807, 1283
Bst1107I	GTATAC	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	23, 292, 347
BstC8I	GCNNGC	1 cut(s)	1150
BstDEI	CTNAG	2 cut(s)	619, 825
BstDSI	CCRYGG	3 cut(s)	200, 864, 1283
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	2 cut(s)	403, 1026
BstHHI	GCGC	2 cut(s)	480, 1026
BstKTI	GATC	7 cut(s)	74, 223, 360, 925, 1123, 1137, 1255
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
BstMCI	CGRYCG	3 cut(s)	699, 1030, 1123
BstNSI	RCATGY	1 cut(s)	121
BstSFI	CTRYAG	2 cut(s)	262, 952
BstSLI	GKGCMC	1 cut(s)	905
BstUI	CGCG	2 cut(s)	403, 1026
BstV1I	GCAGC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	922
BstXI	CCANNNNNNTGG	2 cut(s)	429, 1266
BstYI	RGATCY	1 cut(s)	922
BstZ17I	GTATAC	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	1123
BsuTUI	ATCGAT	1 cut(s)	1123
BtgI	CCRYGG	3 cut(s)	200, 864, 1283
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	1159
BtsIMutI	CAGTG	3 cut(s)	288, 1071, 1159
Cac8I	GCNNGC	1 cut(s)	1150
CciI	TCATGA	2 cut(s)	316, 1180
CfoI	GCGC	2 cut(s)	480, 1026
Cfr10I	RCCGGY	1 cut(s)	1148
ClaI	ATCGAT	1 cut(s)	1123
Csp6I	GTAC	1 cut(s)	832
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	2 cut(s)	619, 825
DpnI	GATC	7 cut(s)	73, 222, 359, 924, 1122, 1136, 1254
DpnII	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
DraI	TTTAAA	1 cut(s)	130
Eco130I	CCWWGG	3 cut(s)	200, 807, 1283
Eco31I	GGTCTC	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	411
EcoT14I	CCWWGG	3 cut(s)	200, 807, 1283
EcoT22I	ATGCAT	1 cut(s)	679
ErhI	CCWWGG	3 cut(s)	200, 807, 1283
FaqI	GGGAC	4 cut(s)	362, 725, 933, 1142
FauI	CCCGC	2 cut(s)	676, 1040
FbaI	TGATCA	2 cut(s)	220, 357
FblI	GTMKAC	3 cut(s)	15, 285, 1070
Fnu4HI	GCNGC	2 cut(s)	404, 604
FokI	GGATG	1 cut(s)	701
Fsp4HI	GCNGC	2 cut(s)	404, 604
FspBI	CTAG	4 cut(s)	216, 773, 926, 1085
FspI	TGCGCA	1 cut(s)	479
GlaI	GCGC	2 cut(s)	479, 1025
GluI	GCNGC	2 cut(s)	404, 604
GsaI	CCCAGC	1 cut(s)	453
HapII	CCGG	1 cut(s)	1149
HhaI	GCGC	2 cut(s)	480, 1026
Hin6I	GCGC	2 cut(s)	478, 1024
HinP1I	GCGC	2 cut(s)	478, 1024
HincII	GTYRAC	3 cut(s)	892, 1071, 1159
HindII	GTYRAC	3 cut(s)	892, 1071, 1159
HinfI	GANTC	7 cut(s)	151, 250, 748, 842, 1016, 1051, 1072
HpaII	CCGG	1 cut(s)	1149
HphI	GGTGA	2 cut(s)	367, 863
Hpy166II	GTNNAC	5 cut(s)	16, 286, 892, 1071, 1159
Hpy188I	TCNGA	7 cut(s)	8, 64, 71, 76, 514, 769, 828
Hpy188III	TCNNGA	9 cut(s)	224, 295, 317, 458, 914, 926, 1076, 1085, 1181
Hpy8I	GTNNAC	5 cut(s)	16, 286, 892, 1071, 1159
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	118, 528, 617
HpyCH4III	ACNGT	3 cut(s)	23, 292, 347
HpyCH4IV	ACGT	3 cut(s)	231, 300, 830
HpyCH4V	TGCA	6 cut(s)	439, 495, 525, 631, 677, 964
HpyF3I	CTNAG	2 cut(s)	619, 825
HpySE526I	ACGT	3 cut(s)	231, 300, 830
HspAI	GCGC	2 cut(s)	478, 1024
KroI	GCCGGC	1 cut(s)	1148
KroNI	GCCGGC	1 cut(s)	1150
Ksp22I	TGATCA	2 cut(s)	220, 357
Kzo9I	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	5 cut(s)	338, 463, 471, 1028, 1162
Lsp1109I	GCAGC	1 cut(s)	615
MaeI	CTAG	4 cut(s)	216, 773, 926, 1085
MaeII	ACGT	3 cut(s)	231, 300, 830
MaeIII	GTNAC	2 cut(s)	303, 938
MalI	GATC	7 cut(s)	73, 222, 359, 924, 1122, 1136, 1254
MboI	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
MboII	GAAGA	7 cut(s)	51, 135, 287, 377, 558, 743, 1106
MfeI	CAATTG	1 cut(s)	473
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	1 cut(s)	905
MlyI	GAGTC	3 cut(s)	244, 851, 1066
MmeI	TCCRAC	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	679
MroNI	GCCGGC	1 cut(s)	1148
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	4 cut(s)	89, 129, 270, 795
MspI	CCGG	1 cut(s)	1149
MunI	CAATTG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	1094
MvnI	CGCG	2 cut(s)	403, 1026
NaeI	GCCGGC	1 cut(s)	1150
NcoI	CCATGG	2 cut(s)	200, 1283
NdeII	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
NgoMIV	GCCGGC	1 cut(s)	1148
NsbI	TGCGCA	1 cut(s)	479
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	1 cut(s)	121
PagI	TCATGA	2 cut(s)	316, 1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	1094
PdiI	GCCGGC	1 cut(s)	1150
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	151, 748, 1016, 1051
PflMI	CCANNNNNTGG	1 cut(s)	1002
PkrI	GCNGC	2 cut(s)	405, 605
Ple19I	CGATCG	1 cut(s)	1123
PleI	GAGTC	3 cut(s)	244, 850, 1066
PpsI	GAGTC	3 cut(s)	244, 850, 1066
Psp1406I	AACGTT	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	922
PvuI	CGATCG	1 cut(s)	1123
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
SalI	GTCGAC	1 cut(s)	1069
SaqAI	TTAA	4 cut(s)	89, 129, 270, 795
SatI	GCNGC	2 cut(s)	404, 604
Sau3AI	GATC	7 cut(s)	71, 220, 357, 922, 1120, 1134, 1252
SchI	GAGTC	3 cut(s)	244, 851, 1066
SduI	GDGCHC	1 cut(s)	905
SetI	ASST	8 cut(s)	69, 234, 303, 502, 628, 774, 833, 1036
SfcI	CTRYAG	2 cut(s)	262, 952
SmiI	ATTTAAAT	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	914, 977
SmoI	CTYRAG	2 cut(s)	914, 977
SsiI	CCGC	5 cut(s)	188, 403, 683, 1026, 1047
SspI	AATATT	3 cut(s)	81, 641, 818
SspMI	CTAG	4 cut(s)	216, 773, 926, 1085
StyI	CCWWGG	3 cut(s)	200, 807, 1283
SwaI	ATTTAAAT	1 cut(s)	130
TaaI	ACNGT	3 cut(s)	23, 292, 347
TaiI	ACGT	3 cut(s)	234, 303, 833
TaqI	TCGA	6 cut(s)	114, 124, 699, 1030, 1070, 1123
TaqII	GACCGA	1 cut(s)	685
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	4 cut(s)	151, 748, 1016, 1051
Tru1I	TTAA	4 cut(s)	89, 129, 270, 795
Tru9I	TTAA	4 cut(s)	89, 129, 270, 795
TscAI	CASTG	3 cut(s)	295, 1071, 1159
TseI	GCWGC	1 cut(s)	603
TspDTI	ATGAA	7 cut(s)	110, 176, 224, 294, 327, 743, 761
TspGWI	ACGGA	3 cut(s)	124, 853, 1130
TspRI	CASTG	3 cut(s)	295, 1071, 1159
Van91I	CCANNNNNTGG	1 cut(s)	1002
XapI	RAATTY	3 cut(s)	411, 426, 985
XbaI	TCTAGA	2 cut(s)	925, 1084
XceI	RCATGY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1263
XmiI	GTMKAC	3 cut(s)	15, 285, 1070
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	4 cut(s)	216, 773, 926, 1085
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.