Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

11705415 .. 11706587

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCTATGGCTAAAGCCGCCAATGAAATAGCTATGGATGATGAAATCGTCGATGGTTGCACGAGTAACTGGTCTGATCTCGCATTCGATCTATTAGAGTTGATCTTGGAAAGACTTGCACTTGTCGACCTCACATGCTTTAAGCTTGTTTCTCCATCTTGGTATGCCGCTGCAAAATCTTATATCTCTGCCCCGTTGTACAGACCCTTGCTTCCTCAAACTGCATGGCTCATGCTCCCTGGAGAACCCAAAGATATAAATGCCCGCCGCTTCTTTAGCCTCACAGAGAAAAAGGTTTACACCTTCAAGAACCTGTTTCGAGGCTTTTCTTATTCCGAAACATGTCTGGGTTCGTCACACGGGTGGCTGGTGATGTTTGACTCAACCACGTTCAGAGTCCATCTTCTCAATCCCATCTATAGGGTTAGAATTAAACTCCCATCTCTAGGATTTGAGATTCCCATACGTAGGGTTAGCAAAGTTGTGCTCTCTTCGGATCCGTCTCGCAACAACAACTTTTACGTTGCGGTAAGCTATCAAAAACAGGGGCCAAGATCACTAGCATTCCACAAGCATGGTGATGATGGAGACAACACTTGGACCGACTTGGACACTGCAGATAAAAGATATGGTGAGATTATATTCCACAACAGCCATTTATTTGCATTATGCATGGACTCAAACATAATTGAAGTTTGGGACCTTGGGGGAATCTATCCCTTCATAGCCACGGAATTCCAACCTCCAGAGAGGGATGTAGAACATCTTAGTTTTCGCTTTTATTTAGTGGAATCACTGGGTGAGCTTTTGTTTGTGGAGAAATGTATGGTTTCTGGTGTATTCATATATGATATTCATAAGTTAAACTTCACTGCCTGTGTGTGGGAGAAATTGGAATGTTTGCAAGAGCAGGCTCTAGTTTTGAGCGAAGAAGAATCAACATCAATGTCATTATCCACTAGAGATTTCCCGGAACTTGAAGCAAACTGCATTTACATAGCCAAAAGAGAGAGAAGAAATTCTGATGGCCGTGCTGTTTATGAGAAATGTCCGACAGTTGTAGTCTACAACTTGCAAAACAACGGTTTCAAGTCGTATTATATGTTCCAAGAGGATAAGCCCATATTGCATTCACCACTTGTTTGGATTGTCCCCAGTCCGTATGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

390

Amino Acids

44.89

Weight (kDa)

5.39

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	24 - 60	6.5e-06	F-box domain
Beta-prop_KIB1-4	PF03478	91 - 342	3.7e-45	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	126, 1065
AciI	CCGC	5 cut(s)	18, 168, 265, 268, 527
AclWI	GGATC	2 cut(s)	491, 504
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	2 cut(s)	734, 1018
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	4 cut(s)	420, 446, 468, 882
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	307, 692, 980, 1090
AjnI	CCWGG	1 cut(s)	238
AleI	CACNNNNGTG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	32, 145, 534, 805
AluI	AGCT	4 cut(s)	32, 145, 534, 805
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	507, 582
AlwI	GGATC	2 cut(s)	491, 504
AoxI	GGCC	2 cut(s)	548, 1027
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	734, 1018
Asp700I	GAANNNNTTC	1 cut(s)	1018
AspS9I	GGNCC	3 cut(s)	548, 600, 700
AsuC2I	CCSGG	1 cut(s)	971
AsuHPI	GGTGA	5 cut(s)	382, 590, 644, 812, 1125
AvaII	GGWCC	2 cut(s)	600, 700
BamHI	GGATCC	1 cut(s)	496
BauI	CACGAG	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	7 cut(s)	47, 163, 408, 422, 448, 578, 1019
BceAI	ACGGC	1 cut(s)	1014
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	971
BcoDI	GTCTC	2 cut(s)	507, 582
BfaI	CTAG	4 cut(s)	446, 560, 917, 960
BfmI	CTRYAG	2 cut(s)	418, 615
BisI	GCNGC	4 cut(s)	18, 168, 171, 268
BlsI	GCNGC	4 cut(s)	19, 169, 172, 269
Bme1390I	CCNGG	2 cut(s)	240, 971
Bme18I	GGWCC	2 cut(s)	600, 700
BmgT120I	GGNCC	3 cut(s)	548, 600, 700
BmiI	GGNNCC	3 cut(s)	498, 549, 701
BmrFI	CCNGG	2 cut(s)	240, 971
BmrI	ACTGGG	2 cut(s)	806, 1149
BmuI	ACTGGG	2 cut(s)	806, 1149
BpmI	CTGGAG	2 cut(s)	261, 729
BpuMI	CCSGG	1 cut(s)	971
BsaAI	YACGTR	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	238, 703, 729
Bsc4I	CCNNNNNNNGG	4 cut(s)	420, 446, 468, 882
Bse1I	ACTGG	3 cut(s)	74, 801, 1155
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	238, 703, 729
BseGI	GGATG	2 cut(s)	43, 760
BseLI	CCNNNNNNNGG	4 cut(s)	420, 446, 468, 882
BseNI	ACTGG	3 cut(s)	74, 801, 1155
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	550, 1029
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	971
BslFI	GGGAC	2 cut(s)	713, 1136
BslI	CCNNNNNNNGG	4 cut(s)	420, 446, 468, 882
BsmAI	GTCTC	2 cut(s)	507, 582
BsmBI	CGTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	713, 1136
BsmI	GAATGC	3 cut(s)	83, 563, 1129
BsnI	GGCC	2 cut(s)	550, 1029
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	76, 88, 102, 496, 554
BspACI	CCGC	5 cut(s)	18, 168, 265, 268, 527
BspANI	GGCC	2 cut(s)	550, 1029
BspLI	GGNNCC	3 cut(s)	498, 549, 701
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	2 cut(s)	491, 504
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	74, 801, 1155
BssECI	CCNNGG	3 cut(s)	238, 703, 729
BssMI	GATC	5 cut(s)	76, 88, 102, 496, 554
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	1057, 1085
Bst6I	CTCTTC	1 cut(s)	496
BstAUI	TGTACA	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	265, 912
BstDEI	CTNAG	1 cut(s)	767
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	2 cut(s)	43, 760
BstKTI	GATC	5 cut(s)	79, 91, 105, 499, 557
BstMAI	GTCTC	2 cut(s)	507, 582
BstMBI	GATC	5 cut(s)	76, 88, 102, 496, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 276, 1126
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	138, 345
BstSCI	CCNGG	2 cut(s)	238, 969
BstSFI	CTRYAG	2 cut(s)	418, 615
BstSNI	TACGTA	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	2 cut(s)	575, 1143
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	550, 1029
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	43, 760
BtsI	GCAGTG	2 cut(s)	612, 870
BtsIMutI	CAGTG	3 cut(s)	612, 794, 870
Cac8I	GCNNGC	2 cut(s)	265, 912
Cfr13I	GGNCC	3 cut(s)	548, 600, 700
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	6 cut(s)	135, 225, 232, 342, 575, 673
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	767
DpnI	GATC	5 cut(s)	78, 90, 104, 498, 556
DpnII	GATC	5 cut(s)	76, 88, 102, 496, 554
DraIII	CACNNNGTG	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco105I	TACGTA	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	600, 700
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	703
Esp3I	CGTCTC	1 cut(s)	507
FaeI	CATG	6 cut(s)	138, 228, 235, 345, 578, 676
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FaqI	GGGAC	2 cut(s)	713, 1136
FatI	CATG	6 cut(s)	134, 224, 231, 341, 574, 672
FauI	CCCGC	1 cut(s)	272
FblI	GTMKAC	2 cut(s)	126, 1065
Fnu4HI	GCNGC	4 cut(s)	18, 168, 171, 268
FokI	GGATG	2 cut(s)	50, 767
Fsp4HI	GCNGC	4 cut(s)	18, 168, 171, 268
FspBI	CTAG	4 cut(s)	446, 560, 917, 960
GluI	GCNGC	4 cut(s)	18, 168, 171, 268
GsuI	CTGGAG	2 cut(s)	261, 729
HaeIII	GGCC	2 cut(s)	550, 1029
HapII	CCGG	1 cut(s)	971
Hin1II	CATG	6 cut(s)	138, 228, 235, 345, 578, 676
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	7 cut(s)	380, 396, 457, 677, 711, 791, 935
HpaII	CCGG	1 cut(s)	971
HphI	GGTGA	5 cut(s)	382, 590, 644, 812, 1125
Hpy166II	GTNNAC	3 cut(s)	127, 298, 1066
Hpy188I	TCNGA	6 cut(s)	76, 337, 395, 496, 1024, 1053
Hpy188III	TCNNGA	2 cut(s)	307, 746
Hpy8I	GTNNAC	3 cut(s)	127, 298, 1066
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	313, 730
HpyCH4III	ACNGT	2 cut(s)	1057, 1085
HpyCH4IV	ACGT	3 cut(s)	389, 466, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 276, 1126
HpyF3I	CTNAG	1 cut(s)	767
HpySE526I	ACGT	3 cut(s)	389, 466, 522
Hsp92II	CATG	6 cut(s)	138, 228, 235, 345, 578, 676
Kzo9I	GATC	5 cut(s)	76, 88, 102, 496, 554
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	4 cut(s)	446, 560, 917, 960
MaeII	ACGT	3 cut(s)	389, 466, 522
MaeIII	GTNAC	2 cut(s)	65, 354
MalI	GATC	5 cut(s)	78, 90, 104, 498, 556
MboI	GATC	5 cut(s)	76, 88, 102, 496, 554
MboII	GAAGA	5 cut(s)	395, 483, 941, 944, 1026
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	5 cut(s)	429, 687, 734, 890, 1018
MlyI	GAGTC	3 cut(s)	374, 405, 671
MmeI	TCCRAC	2 cut(s)	763, 1076
MnlI	CCTC	8 cut(s)	140, 225, 290, 314, 744, 753, 1105, 1159
Mph1103I	ATGCAT	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	1018
MseI	TTAA	3 cut(s)	141, 432, 863
MslI	CAYNNNNRTG	3 cut(s)	361, 573, 579
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	971
MspR9I	CCNGG	2 cut(s)	240, 971
Mva1269I	GAATGC	3 cut(s)	83, 563, 1129
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	17, 276, 1126
NciI	CCSGG	1 cut(s)	971
NdeII	GATC	5 cut(s)	76, 88, 102, 496, 554
NlaIII	CATG	6 cut(s)	138, 228, 235, 345, 578, 676
NlaIV	GGNNCC	3 cut(s)	498, 549, 701
NmuCI	GTSAC	1 cut(s)	354
NsiI	ATGCAT	1 cut(s)	674
NspI	RCATGY	2 cut(s)	138, 345
OliI	CACNNNNGTG	1 cut(s)	361
PciI	ACATGT	1 cut(s)	341
PctI	GAATGC	3 cut(s)	83, 563, 1129
PdmI	GAANNNNTTC	1 cut(s)	1018
PfeI	GAWTC	4 cut(s)	457, 711, 791, 935
PfoI	TCCNGGA	1 cut(s)	969
PkrI	GCNGC	4 cut(s)	19, 169, 172, 269
PleI	GAGTC	3 cut(s)	374, 404, 671
PpsI	GAGTC	3 cut(s)	374, 404, 671
Ppu21I	YACGTR	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	700
PscI	ACATGT	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	498, 549, 701
PspPI	GGNCC	3 cut(s)	548, 600, 700
PspPPI	RGGWCCY	1 cut(s)	700
PsrI	GAACNNNNNNTAC	2 cut(s)	1088, 1120
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	3 cut(s)	361, 573, 579
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	141, 432, 863
SatI	GCNGC	4 cut(s)	18, 168, 171, 268
Sau3AI	GATC	5 cut(s)	76, 88, 102, 496, 554
Sau96I	GGNCC	3 cut(s)	548, 600, 700
SchI	GAGTC	3 cut(s)	374, 405, 671
ScrFI	CCNGG	2 cut(s)	240, 971
SduI	GDGCHC	1 cut(s)	489
SfcI	CTRYAG	2 cut(s)	418, 615
SinI	GGWCC	2 cut(s)	600, 700
SmiMI	CAYNNNNRTG	3 cut(s)	361, 573, 579
SnaBI	TACGTA	1 cut(s)	467
Sse9I	AATT	5 cut(s)	429, 687, 734, 890, 1018
SsiI	CCGC	5 cut(s)	18, 168, 265, 268, 527
SspMI	CTAG	4 cut(s)	446, 560, 917, 960
StyD4I	CCNGG	2 cut(s)	238, 969
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	2 cut(s)	1057, 1085
TaiI	ACGT	3 cut(s)	392, 469, 525
TaqI	TCGA	4 cut(s)	51, 87, 126, 319
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	5 cut(s)	429, 687, 734, 890, 1018
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	3 cut(s)	20, 170, 270
TfiI	GAWTC	4 cut(s)	457, 711, 791, 935
Tru1I	TTAA	3 cut(s)	141, 432, 863
Tru9I	TTAA	3 cut(s)	141, 432, 863
TscAI	CASTG	3 cut(s)	619, 801, 877
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	5 cut(s)	39, 57, 712, 832, 845
TspGWI	ACGGA	3 cut(s)	489, 746, 1149
TspRI	CASTG	3 cut(s)	619, 801, 877
VpaK11BI	GGWCC	2 cut(s)	600, 700
XapI	RAATTY	2 cut(s)	734, 1018
XceI	RCATGY	2 cut(s)	138, 345
XmiI	GTMKAC	2 cut(s)	126, 1065
XmnI	GAANNNNTTC	1 cut(s)	1018
XspI	CTAG	4 cut(s)	446, 560, 917, 960
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.