Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

41386621 .. 41399202

Gene Structure 12582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0244300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

ATGCTGTTGCAGAAGCACTTTTCTTGGGGAGTGCTTGTGGTACTAGTTGTGGTTATCGGGGGTAGCTTGCAGACTGTGGTGGAGGGACGCCCTCGCCGGATTCTTTTGGATACCGACGTCGACACCGATGATTTCTTTGCTCTCTTGTACCTCTTGAAGCTCAACAGATCAGAGTTTCAGTTGGAGGCAGTAACAGTCAATGCAAATGCGTGGACCAATTCGGGGCATGCTGTGAACCATATATATGACCTCCTTTACATGATGGGACGTGATGATGTTGCTGTTGGAGTTGGAGGTGAGGGTGGTATACTAGAAGATGGTACAATTCTCCCAAATGTTGGTGGATATCTTCCATTAATCGAACAGGGAACTACAACAGCAGGAGGATGCAGATATAGACAAGCTATTCCTGTAGGACCTGGAGGTCGATTAGATATCGATACTAATTTTGGCATCCGAAAAGCTTTTCTCCCACAGGGGAGCAGGAGATATAGTCCATTTCGACAACCTACTGCTCAGCAAGTGATGATTGACAAAATATCTGCAGGTCCCAAAATAACTGTGATTGTTATAGGAGCACATACAAACTTTGCCATATTCCTTATGAATAATCCACACTTGAAGAAGAATGTTAAGCATATTTATGTGATGGGGGGTGGTGTGAGATCAAAGAACCCAACTGGTTGTTGCCCCAAAAATGCCACCTCGACTTGTGTGCCTGAGCAGTGTGGTGATCCTGGTAACTTGTTCACTGACTATACCAGTAATCCTTATGCAGAGTTCAATATCTATGGAGACCCTTTTGCTGCTTACCAGGTTATTCATTCAGGAATTCCTGTCACCCTTGTTCCTTTAGATGCAACAAACACCATTCCGATTAATCAAAACTTCTATGAAGCATTTGAGAAGAGTCAGACTACATATGAGGCACAATATTGCTTCAAGTCCTTGAAAATGCAACATGATACTTGGTTCGACAACCAATTCTTCACTAGCTATTTTATGTGGGACTCTTTTACATCTGGTGTAGCAGTCTCAATCATGCAAAACTCGGATAATAGCAGTCATCCAGAGAATGAATTTGCTGAAATGGAGTACATGAACATAACTGTTATTACTTCGAATGAACCTTATGGGGTCTCTGATGGCTCCGATCCTTTCTTTGACGGCCTTAAAGTTCCGAAATTCAACTTATCAAAAAATGGTGTGCATAGTGGTCATGTCCAAACTGGTCTTAGAGATCCATTCTGCATTGTGAAGAATGGGAAAGGAAAATGCAAGGATGGTTATACAGCAGAAGTAACAGGTCCAGAGGCAGTGACAGTGCTTGTTGCTACAAAAGCAAAACCAAATAAGGATGTTGAAAGCCCACTTAACAGAGAATTCTTTAAAAGCTTCTTGGAAGTTCTAAACAGCCCTCAACAAACAGGGAAATTCAATTTTACAACACAATTTCCTTTCTACAAGGAAGTGACATATAAACCAGATTTTGGAAATACTAAACTGGGCAAACCTGTTGTGTTTGACATGGATATGAGTGCTGGAGACTTTCTAGCTTTGCTTTACCTCCTCAAAGTTCCTGTTGAAGAGATTAATCTCAAGGCAATACTAGTGACCCCTACTGGTTGGGCAAATGCTGCAACAATAGATATCATATATGACTTGCTGCATATGATGGGTCGTGACGACATTCCAGTTGGTCGAGGAGATGTATTTGCTATGAACCAATCTGACCCATCTTTCTCTGCGGTTGGAGACTGCAAAAATGTTAAGGCTATCCCACATGGGGGTGGTGGATTACTGGATTCAGACACTCTCTACGGCCTCGCTCGTGACTTACCTCGAAGCCCAAGAAGGTATACAGCAGAAAATTCTGTGAAATATCGAGCCCCACGGGATACAGATAACCCTGAACTCAGGCAACCACTAGCATTGGAAGTTTGGGAGTCTGTGGTGAAAACATTGGATCCAGGATCTAAGGTTATCATATTGACCAATGGACCATTGACTACTCTAGCAAGCATTATTTTGTCGGAAAATAACACTAGCTCTCTAATTCAGGATGTGTATATAGTTGGAGGACATATCAGCCGCAGTGAAAATGACAAAGGAAATGTGTTTTCGATTCCTTCCAGTGAATATGCCGAGTTCAATATGTTTCTTGACCCTTTGGCTGCAAAGACTGTGTTTGATTCCTCACTTAACATCACACTCATTCCTCTTGGCATCCAGCAGAGAGTTAGTGATTTTCCAAAAATATTAAAAAGGCTGCGCAGCACGAAGAAGACAACACCAGAAGCTCTGTTTGCCTGGCGATTGCTGTCAAGGCTATACCGTTTGCAACAATTACACCATAGCTATCACCACATGGGAACTTTCTCAGGGGAACTCCTTGGTGCAGTTCTCTTGGACGGTGATTCTCATCTGAGCCAAAGCTTCAAACTCAAACACTTCAAAGTGTTTGCTGATGATATTGAATCCAGAGATGGGGAAATTTTGACTTATCAAAACCAAGGAAAATTAGTCAAAGTATTGGACAAAGTAAATCCCAGGGCATATTATGAACTTTTCGCAGAACGGCTAAGTGATTCAAAGCAGTCTGCTGTATTAGCAAGTTTTGAAGAGCAAAAAAAATTGTGGCAGAAACCACCAAATCAAACTGAGCCTGCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

891

Amino Acids

98.89

Weight (kDa)

6.03

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	34 - 375	9.2e-38	Inosine-uridine preferring nucleoside hydrolase
IU_nuc_hydro	PF01156	506 - 853	4.7e-34	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	423
AatII	GACGTC	1 cut(s)	120
Acc16I	TGCGCA	1 cut(s)	2273
Acc36I	ACCTGC	1 cut(s)	536
AccB7I	CCANNNNNTGG	2 cut(s)	338, 1490
AccI	GTMKAC	3 cut(s)	120, 307, 1859
AciI	CCGC	2 cut(s)	1748, 2092
AclWI	GGATC	6 cut(s)	728, 1148, 1235, 1961, 1974, 1981
AcsI	RAATTY	7 cut(s)	831, 1079, 1184, 1382, 1433, 1870, 2493
AcyI	GRCGYC	2 cut(s)	88, 117
AfaI	GTAC	4 cut(s)	42, 149, 322, 1097
AfiI	CCNNNNNNNGG	6 cut(s)	222, 338, 1490, 1786, 1787, 2487
AhlI	ACTAGT	2 cut(s)	43, 1609
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	6 cut(s)	418, 736, 813, 1969, 2309, 2549
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	5 cut(s)	789, 1039, 1144, 1539, 1749
AlwI	GGATC	6 cut(s)	728, 1148, 1235, 1961, 1974, 1981
AoxI	GGCC	2 cut(s)	1168, 1822
ApeKI	GCWGC	6 cut(s)	806, 1637, 1666, 2174, 2269, 2274
ApoI	RAATTY	7 cut(s)	831, 1079, 1184, 1382, 1433, 1870, 2493
AseI	ATTAAT	3 cut(s)	356, 879, 1593
AspLEI	GCGC	1 cut(s)	2274
AspS9I	GGNCC	5 cut(s)	213, 416, 548, 1307, 2000
AsuHPI	GGTGA	6 cut(s)	308, 743, 832, 1966, 2354, 2426
AsuII	TTCGAA	1 cut(s)	1121
AvaII	GGWCC	5 cut(s)	213, 416, 548, 1307, 2000
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BamHI	GGATCC	1 cut(s)	1966
BanII	GRGCYC	1 cut(s)	1891
BauI	CACGAG	1 cut(s)	1830
BbsI	GAAGAC	1 cut(s)	2291
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	6 cut(s)	793, 1624, 1653, 2161, 2256, 2286
BccI	CCATC	8 cut(s)	256, 311, 643, 1139, 1277, 1669, 1744, 2480
BceAI	ACGGC	3 cut(s)	1183, 1837, 2594
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BciT130I	CCWGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
BciVI	GTATCC	2 cut(s)	103, 1891
BcoDI	GTCTC	5 cut(s)	789, 1039, 1144, 1539, 1749
BcuI	ACTAGT	2 cut(s)	43, 1609
BfaI	CTAG	8 cut(s)	44, 311, 993, 1553, 1610, 1928, 2015, 2046
BfmI	CTRYAG	3 cut(s)	411, 543, 2667
BfuAI	ACCTGC	1 cut(s)	536
BfuI	GTATCC	2 cut(s)	103, 1891
BisI	GCNGC	7 cut(s)	807, 1638, 1667, 2092, 2175, 2270, 2275
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	7 cut(s)	808, 1639, 1668, 2093, 2176, 2271, 2276
Bme1390I	CCNGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
Bme18I	GGWCC	5 cut(s)	213, 416, 548, 1307, 2000
BmgBI	CACGTC	1 cut(s)	269
BmgT120I	GGNCC	5 cut(s)	213, 416, 548, 1307, 2000
BmiI	GGNNCC	3 cut(s)	550, 1150, 1968
BmrFI	CCNGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
BmrI	ACTGGG	1 cut(s)	1514
BmsI	GCATC	4 cut(s)	377, 462, 847, 2235
BmuI	ACTGGG	1 cut(s)	1514
BpiI	GAAGAC	1 cut(s)	2291
BpmI	CTGGAG	2 cut(s)	441, 1563
Bpu10I	CCTNAGC	1 cut(s)	720
Bpu1102I	GCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	1121
BpuEI	CTTGAG	1 cut(s)	1583
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	2421
BsaHI	GRCGYC	2 cut(s)	88, 117
BsaI	GGTCTC	2 cut(s)	789, 1144
BsaJI	CCNNGG	5 cut(s)	1892, 2392, 2512, 2549, 2550
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 478, 508
Bsc4I	CCNNNNNNNGG	6 cut(s)	222, 338, 1490, 1786, 1787, 2487
Bse1I	ACTGG	8 cut(s)	685, 762, 1234, 1509, 1627, 1694, 1806, 2133
Bse8I	GATNNNNATC	1 cut(s)	2421
BseBI	CCWGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	5 cut(s)	1892, 2392, 2512, 2549, 2550
BseGI	GGATG	7 cut(s)	392, 453, 1066, 1288, 1363, 2068, 2226
BseJI	GATNNNNATC	1 cut(s)	2421
BseLI	CCNNNNNNNGG	6 cut(s)	222, 338, 1490, 1786, 1787, 2487
BseMII	CTCAG	6 cut(s)	530, 711, 1930, 2394, 2417, 2652
BseNI	ACTGG	8 cut(s)	685, 762, 1234, 1509, 1627, 1694, 1806, 2133
BseRI	GAGGAG	2 cut(s)	1559, 1719
BseXI	GCAGC	6 cut(s)	793, 1624, 1653, 2161, 2256, 2286
BsgI	GTGCAG	1 cut(s)	2418
BshFI	GGCC	2 cut(s)	1170, 1824
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	4 cut(s)	99, 279, 534, 1022
BslI	CCNNNNNNNGG	6 cut(s)	222, 338, 1490, 1786, 1787, 2487
BsmAI	GTCTC	5 cut(s)	789, 1039, 1144, 1539, 1749
BsmFI	GGGAC	4 cut(s)	99, 279, 534, 1022
BsnI	GGCC	2 cut(s)	1170, 1824
Bso31I	GGTCTC	2 cut(s)	789, 1144
Bsp119I	TTCGAA	1 cut(s)	1121
Bsp1286I	GDGCHC	2 cut(s)	580, 1891
Bsp143I	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	1748, 2092
BspANI	GGCC	2 cut(s)	1170, 1824
BspCNI	CTCAG	6 cut(s)	529, 712, 1929, 2393, 2418, 2653
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	3 cut(s)	550, 1150, 1968
BspMAI	CTGCAG	2 cut(s)	547, 2671
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	6 cut(s)	728, 1148, 1235, 1961, 1974, 1981
BspQI	GCTCTTC	1 cut(s)	2616
BspT104I	TTCGAA	1 cut(s)	1121
BspTNI	GGTCTC	2 cut(s)	789, 1144
BsrI	ACTGG	8 cut(s)	685, 762, 1234, 1509, 1627, 1694, 1806, 2133
BssECI	CCNNGG	5 cut(s)	1892, 2392, 2512, 2549, 2550
BssMI	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
BssNAI	GTATAC	2 cut(s)	308, 1860
BssNI	GRCGYC	2 cut(s)	88, 117
BssSI	CACGAG	1 cut(s)	1830
BssT1I	CCWWGG	2 cut(s)	2392, 2512
Bst1107I	GTATAC	2 cut(s)	308, 1860
Bst2BI	CACGAG	1 cut(s)	1830
Bst2UI	CCWGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
Bst4CI	ACNGT	8 cut(s)	76, 196, 562, 1111, 1324, 2185, 2336, 2414
Bst6I	CTCTTC	3 cut(s)	902, 1581, 2616
BstACI	GRCGYC	2 cut(s)	88, 117
BstAPI	GCANNNNNTGC	1 cut(s)	1637
BstBI	TTCGAA	1 cut(s)	1121
BstC8I	GCNNGC	4 cut(s)	68, 228, 2020, 2667
BstDEI	CTNAG	9 cut(s)	516, 720, 1235, 1916, 1977, 2380, 2426, 2582, 2661
BstDSI	CCRYGG	1 cut(s)	1892
BstF5I	GGATG	7 cut(s)	392, 453, 1066, 1288, 1363, 2068, 2226
BstHHI	GCGC	1 cut(s)	2274
BstKTI	GATC	7 cut(s)	170, 668, 736, 1156, 1243, 1969, 1976
BstMAI	GTCTC	5 cut(s)	789, 1039, 1144, 1539, 1749
BstMBI	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
BstMWI	GCNNNNNNNGC	5 cut(s)	1340, 1637, 2306, 2326, 2609
BstNI	CCWGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	6 cut(s)	418, 736, 813, 1969, 2309, 2549
BstSFI	CTRYAG	3 cut(s)	411, 543, 2667
BstV1I	GCAGC	6 cut(s)	793, 1624, 1653, 2161, 2256, 2286
BstV2I	GAAGAC	1 cut(s)	2291
BstX2I	RGATCY	3 cut(s)	1240, 1966, 1973
BstYI	RGATCY	3 cut(s)	1240, 1966, 1973
BstZ17I	GTATAC	2 cut(s)	308, 1860
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	2 cut(s)	103, 1891
BsuRI	GGCC	2 cut(s)	1170, 1824
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	1892
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	7 cut(s)	392, 453, 1066, 1288, 1363, 2068, 2226
BtsI	GCAGTG	3 cut(s)	731, 1323, 2101
BtsIMutI	CAGTG	6 cut(s)	731, 750, 1323, 1329, 2101, 2140
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	4 cut(s)	68, 228, 2020, 2667
CfoI	GCGC	1 cut(s)	2274
Cfr13I	GGNCC	5 cut(s)	213, 416, 548, 1307, 2000
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	96
CsiI	ACCWGGT	1 cut(s)	813
Csp6I	GTAC	4 cut(s)	41, 148, 321, 1096
CspCI	CAANNNNNGTGG	2 cut(s)	1914, 1949
CviAII	CATG	9 cut(s)	227, 259, 962, 1042, 1099, 1220, 1528, 1784, 2368
CviQI	GTAC	4 cut(s)	41, 148, 321, 1096
DdeI	CTNAG	9 cut(s)	516, 720, 1235, 1916, 1977, 2380, 2426, 2582, 2661
DpnI	GATC	7 cut(s)	169, 667, 735, 1155, 1242, 1968, 1975
DpnII	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
DraI	TTTAAA	1 cut(s)	1390
DrdI	GACNNNNNNGTC	1 cut(s)	423
DseDI	GACNNNNNNGTC	1 cut(s)	423
Eam1104I	CTCTTC	3 cut(s)	902, 1581, 2616
EarI	CTCTTC	3 cut(s)	902, 1581, 2616
Eco130I	CCWWGG	2 cut(s)	2392, 2512
Eco24I	GRGCYC	1 cut(s)	1891
Eco31I	GGTCTC	2 cut(s)	789, 1144
Eco32I	GATATC	3 cut(s)	347, 436, 1651
Eco47I	GGWCC	5 cut(s)	213, 416, 548, 1307, 2000
EcoO109I	RGGNCCY	2 cut(s)	416, 548
EcoRI	GAATTC	2 cut(s)	831, 1382
EcoRII	CCWGG	6 cut(s)	418, 736, 813, 1969, 2309, 2549
EcoRV	GATATC	3 cut(s)	347, 436, 1651
EcoT14I	CCWWGG	2 cut(s)	2392, 2512
EcoT38I	GRGCYC	1 cut(s)	1891
ErhI	CCWWGG	2 cut(s)	2392, 2512
FaeI	CATG	9 cut(s)	230, 262, 965, 1045, 1102, 1223, 1531, 1787, 2371
FaqI	GGGAC	4 cut(s)	99, 279, 534, 1022
FatI	CATG	9 cut(s)	226, 258, 961, 1041, 1098, 1219, 1527, 1783, 2367
FauNDI	CATATG	2 cut(s)	922, 1671
FblI	GTMKAC	3 cut(s)	120, 307, 1859
Fnu4HI	GCNGC	7 cut(s)	807, 1638, 1667, 2092, 2175, 2270, 2275
FokI	GGATG	7 cut(s)	399, 440, 1053, 1295, 1370, 2075, 2213
FriOI	GRGCYC	1 cut(s)	1891
Fsp4HI	GCNGC	7 cut(s)	807, 1638, 1667, 2092, 2175, 2270, 2275
FspBI	CTAG	8 cut(s)	44, 311, 993, 1553, 1610, 1928, 2015, 2046
FspI	TGCGCA	1 cut(s)	2273
GlaI	GCGC	1 cut(s)	2273
GluI	GCNGC	7 cut(s)	807, 1638, 1667, 2092, 2175, 2270, 2275
GsuI	CTGGAG	2 cut(s)	441, 1563
HaeIII	GGCC	2 cut(s)	1170, 1824
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	2274
Hin1I	GRCGYC	2 cut(s)	88, 117
Hin1II	CATG	9 cut(s)	230, 262, 965, 1045, 1102, 1223, 1531, 1787, 2371
Hin6I	GCGC	1 cut(s)	2272
HinP1I	GCGC	1 cut(s)	2272
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	3 cut(s)	462, 1393, 2434
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	6 cut(s)	308, 743, 832, 1966, 2354, 2426
Hpy166II	GTNNAC	6 cut(s)	121, 213, 235, 308, 750, 1860
Hpy188III	TCNNGA	9 cut(s)	154, 828, 1070, 1310, 1682, 1832, 2060, 2162, 2481
Hpy8I	GTNNAC	6 cut(s)	121, 213, 235, 308, 750, 1860
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	2 cut(s)	1848, 2139
HpyCH4III	ACNGT	8 cut(s)	76, 196, 562, 1111, 1324, 2185, 2336, 2414
HpyCH4IV	ACGT	2 cut(s)	117, 268
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1340, 1637, 2306, 2326, 2609
HpyF3I	CTNAG	9 cut(s)	516, 720, 1235, 1916, 1977, 2380, 2426, 2582, 2661
HpySE526I	ACGT	2 cut(s)	117, 268
Hsp92I	GRCGYC	2 cut(s)	88, 117
Hsp92II	CATG	9 cut(s)	230, 262, 965, 1045, 1102, 1223, 1531, 1787, 2371
HspAI	GCGC	1 cut(s)	2272
Kzo9I	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
LguI	GCTCTTC	1 cut(s)	2616
LmnI	GCTCC	3 cut(s)	480, 575, 1154
Lsp1109I	GCAGC	6 cut(s)	793, 1624, 1653, 2161, 2256, 2286
LweI	GCATC	4 cut(s)	377, 462, 847, 2235
MabI	ACCWGGT	1 cut(s)	813
MaeI	CTAG	8 cut(s)	44, 311, 993, 1553, 1610, 1928, 2015, 2046
MaeII	ACGT	2 cut(s)	117, 268
MaeIII	GTNAC	9 cut(s)	190, 740, 838, 1300, 1318, 1471, 1612, 1682, 1832
MalI	GATC	7 cut(s)	169, 667, 735, 1155, 1242, 1968, 1975
MboI	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
MflI	RGATCY	3 cut(s)	1240, 1966, 1973
MhlI	GDGCHC	2 cut(s)	580, 1891
MlyI	GAGTC	3 cut(s)	919, 1004, 1955
MmeI	TCCRAC	6 cut(s)	162, 265, 271, 1732, 2013, 2056
MslI	CAYNNNNRTG	4 cut(s)	243, 642, 1532, 1788
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
MvaI	CCWGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
MwoI	GCNNNNNNNGC	5 cut(s)	1340, 1637, 2306, 2326, 2609
NdeI	CATATG	2 cut(s)	922, 1671
NdeII	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
NlaIII	CATG	9 cut(s)	230, 262, 965, 1045, 1102, 1223, 1531, 1787, 2371
NlaIV	GGNNCC	3 cut(s)	550, 1150, 1968
NmeAIII	GCCGAG	1 cut(s)	2170
NmuCI	GTSAC	6 cut(s)	838, 1318, 1471, 1612, 1682, 1832
NsbI	TGCGCA	1 cut(s)	2273
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	1121
PaeI	GCATGC	1 cut(s)	230
PasI	CCCWGGG	1 cut(s)	2550
PciSI	GCTCTTC	1 cut(s)	2616
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	7 cut(s)	100, 1805, 2125, 2192, 2417, 2477, 2588
PflMI	CCANNNNNTGG	2 cut(s)	338, 1490
PfoI	TCCNGGA	1 cut(s)	1969
PkrI	GCNGC	7 cut(s)	808, 1639, 1668, 2093, 2176, 2271, 2276
PleI	GAGTC	3 cut(s)	918, 1004, 1954
PpsI	GAGTC	3 cut(s)	918, 1004, 1954
PpuMI	RGGWCCY	2 cut(s)	416, 548
PshBI	ATTAAT	3 cut(s)	356, 879, 1593
Psp5II	RGGWCCY	2 cut(s)	416, 548
Psp6I	CCWGG	6 cut(s)	418, 736, 813, 1969, 2309, 2549
PspGI	CCWGG	6 cut(s)	418, 736, 813, 1969, 2309, 2549
PspN4I	GGNNCC	3 cut(s)	550, 1150, 1968
PspPI	GGNCC	5 cut(s)	213, 416, 548, 1307, 2000
PspPPI	RGGWCCY	2 cut(s)	416, 548
PstI	CTGCAG	2 cut(s)	547, 2671
PsuI	RGATCY	3 cut(s)	1240, 1966, 1973
RsaI	GTAC	4 cut(s)	42, 149, 322, 1097
RsaNI	GTAC	4 cut(s)	41, 148, 321, 1096
RseI	CAYNNNNRTG	4 cut(s)	243, 642, 1532, 1788
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	2616
SatI	GCNGC	7 cut(s)	807, 1638, 1667, 2092, 2175, 2270, 2275
Sau3AI	GATC	7 cut(s)	167, 665, 733, 1153, 1240, 1966, 1973
Sau96I	GGNCC	5 cut(s)	213, 416, 548, 1307, 2000
SchI	GAGTC	3 cut(s)	919, 1004, 1955
ScrFI	CCNGG	6 cut(s)	420, 738, 815, 1971, 2311, 2551
SduI	GDGCHC	2 cut(s)	580, 1891
SexAI	ACCWGGT	1 cut(s)	813
SfaNI	GCATC	4 cut(s)	377, 462, 847, 2235
SfcI	CTRYAG	3 cut(s)	411, 543, 2667
SfuI	TTCGAA	1 cut(s)	1121
SinI	GGWCC	5 cut(s)	213, 416, 548, 1307, 2000
SmiMI	CAYNNNNRTG	4 cut(s)	243, 642, 1532, 1788
SmlI	CTYRAG	1 cut(s)	1598
SmoI	CTYRAG	1 cut(s)	1598
SpeI	ACTAGT	2 cut(s)	43, 1609
SphI	GCATGC	1 cut(s)	230
SsiI	CCGC	2 cut(s)	1748, 2092
SspI	AATATT	2 cut(s)	935, 2259
SspMI	CTAG	8 cut(s)	44, 311, 993, 1553, 1610, 1928, 2015, 2046
StyD4I	CCNGG	6 cut(s)	418, 736, 813, 1969, 2309, 2549
StyI	CCWWGG	2 cut(s)	2392, 2512
TaaI	ACNGT	8 cut(s)	76, 196, 562, 1111, 1324, 2185, 2336, 2414
TaiI	ACGT	2 cut(s)	120, 271
TatI	WGTACW	1 cut(s)	1095
TauI	GCSGC	1 cut(s)	2094
TfiI	GAWTC	7 cut(s)	100, 1805, 2125, 2192, 2417, 2477, 2588
TscAI	CASTG	6 cut(s)	731, 757, 1323, 1329, 2101, 2140
TseFI	GTSAC	6 cut(s)	838, 1318, 1471, 1612, 1682, 1832
TseI	GCWGC	6 cut(s)	806, 1637, 1666, 2174, 2269, 2274
Tsp45I	GTSAC	6 cut(s)	838, 1318, 1471, 1612, 1682, 1832
TspDTI	ATGAA	8 cut(s)	620, 812, 909, 1092, 1115, 1140, 1736, 2577
TspRI	CASTG	6 cut(s)	731, 757, 1323, 1329, 2101, 2140
Van91I	CCANNNNNTGG	2 cut(s)	338, 1490
VpaK11BI	GGWCC	5 cut(s)	213, 416, 548, 1307, 2000
VspI	ATTAAT	3 cut(s)	356, 879, 1593
XapI	RAATTY	7 cut(s)	831, 1079, 1184, 1382, 1433, 1870, 2493
XceI	RCATGY	1 cut(s)	230
XmiI	GTMKAC	3 cut(s)	120, 307, 1859
XspI	CTAG	8 cut(s)	44, 311, 993, 1553, 1610, 1928, 2015, 2046
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.