FvH4_4g04480

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000700
Physical Location & Seq
Reverse (-)
3818094 .. 3823943
5850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04480.t1

Sequence Viewer

Length: 1302 bp
ATGGATCTCGACTGCACCAGAAAGACAAGATCGCCACCAGATTGGTCTAAGCTTCCACAAGAACTCTTAGGGTTCCTCACGACAAAGCTTGTTTCGGCAGACACCATTCGCTTTAAAGCCGTTTGCCCTTCTTGGAATCGAGCAGCCACATCTTACATCTCTTCCCCATCCTACAATGTCATGGATCAAACTCCTTTGCTCATGATTCCTAGCAGTGACAAGCAGAACGATCCCCATACTCGCCGCTTCTTCAGCCTTGCAGAGAACAAAACCTTCACTCTCAGAGACGTGTTTCGAGATTTTCCGGAGGCTTGGTGTGTTGGTTCATCACATGGATGGCTGGTGCTTATGGATGCGACAGGAAAAATGGATCTTTTTAATCCGTTTTCTGAAGATAAGATTGAACTCCCATCGTTCTGCACTCTTCCTCACTTTGTCAGACATGAAACTAACCCCGCTTTCCCCAGGATGAAGGCCTTGATAATGAGGACATATATTACGGGTAAAGTTGTCACTTCTTGTAACCCTTCTTGCAACAAGGACTTTGCTGTTGTGATAACTCACAGCTTGGGAGGAAGGCTTGCATTTTGTAAGGTTGGAGACAATAGATGTACATGGACTGACCTAGGTGAGGAGTCTGATCATTATAGTGATATTATGTTCCACAACGGCCAGTTATATACAGCGACATCCCTCGGTTCAGTTGGAGTTTGGGACTTGACGAAATCTTTGCCATCGAAAGTTCTTGATCTTCACCCTTGTTGTGCAGACGGCCGGGAGATTAATAAACACTTTCCCTATCACAAGTTTGATGTTCAGCATTATTTGGTGGAGTCTTCGGGTGACCTTTTATTTGTTTGGCGATTTATAGTGAAGAGTATTGAAGTCAGAACGTTCCCACATAAAACCGAGCACTTTCATATCTTTAGGCTGAGTTCCGATAGAAAAGACTGGGAGAAAGTGGAATATTTGCATGACCGGGCACTGTTCTTGGGTGGCAATCATTCAATGTCAGTATCCACCCTTATCTTTCCTGAATGTCAAGAAAACTCGATTTATTTTACAGATGATAATTCTTATGAGATGGCTTTGAAGCACCATGTTGATGATAAGGCATGCGCTCATGATCATGGAGTATACAATTTAGAAGGTAAGGTTGTCGAGCCAGTACCAGGTAACCAGTATATTGATAAGGGGACAATTTATGATCCCCTTCCCTTCTGGGTTTGTCCCTACCCTTGGCCTTCCACAGTGAGCTACGGTGCACCATCCTCCTCCTCGCCATCAGGGCAACAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

434

Amino Acids

49.32

Weight (kDa)

6.19

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 83 - 381 2.1e-60 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27550
fragaria_vesca FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis pycom13g10170 pycom16g10020
rosa_chinensis RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1137
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 2 cut(s) 244, 456
AclI AACGTT 1 cut(s) 893
AclWI GGATC 5 cut(s) 12, 192, 224, 378, 1202
AcoI YGGCCR 2 cut(s) 670, 772
AcuI CTGAAG 2 cut(s) 235, 411
AfaI GTAC 2 cut(s) 613, 1170
AfiI CCNNNNNNNGG 3 cut(s) 631, 1172, 1239
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 4 cut(s) 404, 884, 1008, 1093
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 2 cut(s) 464, 1171
AluBI AGCT 4 cut(s) 52, 88, 567, 1257
AluI AGCT 4 cut(s) 52, 88, 567, 1257
Alw21I GWGCWC 2 cut(s) 915, 1267
Alw26I GTCTC 2 cut(s) 279, 594
Alw44I GTGCAC 1 cut(s) 1263
AlwI GGATC 5 cut(s) 12, 192, 224, 378, 1202
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 4 cut(s) 474, 670, 772, 1241
ApaLI GTGCAC 1 cut(s) 1263
ApeKI GCWGC 1 cut(s) 143
ArsI GACNNNNNNTTYG 4 cut(s) 712, 744, 836, 868
AseI ATTAAT 1 cut(s) 783
AspA2I CCTAGG 1 cut(s) 625
AspLEI GCGC 1 cut(s) 1121
AsuC2I CCSGG 2 cut(s) 776, 980
AsuHPI GGTGA 3 cut(s) 641, 746, 854
AvrII CCTAGG 1 cut(s) 625
BaeGI GKGCMC 2 cut(s) 985, 1267
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 2 cut(s) 915, 1267
BbvI GCAGC 1 cut(s) 155
BccI CCATC 7 cut(s) 175, 330, 418, 742, 1078, 1276, 1291
BceAI ACGGC 3 cut(s) 104, 685, 787
BcgI CGANNNNNNTGC 2 cut(s) 712, 746
BciT130I CCWGG 2 cut(s) 466, 1173
BciVI GTATCC 1 cut(s) 1027
BclI TGATCA 2 cut(s) 640, 1126
BcnI CCSGG 2 cut(s) 776, 980
BcoDI GTCTC 2 cut(s) 279, 594
BfaI CTAG 2 cut(s) 210, 626
BfuI GTATCC 1 cut(s) 1027
BglI GCCNNNNNGGC 1 cut(s) 1288
BisI GCNGC 2 cut(s) 144, 244
BlnI CCTAGG 1 cut(s) 625
BlsI GCNGC 2 cut(s) 145, 245
Bme1390I CCNGG 4 cut(s) 466, 776, 980, 1173
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 4 cut(s) 466, 776, 980, 1173
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 1 cut(s) 343
BmuI ACTGGG 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 828
BpuMI CCSGG 2 cut(s) 776, 980
BsaJI CCNNGG 4 cut(s) 464, 625, 694, 1238
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 631, 1172, 1239
Bse1I ACTGG 4 cut(s) 673, 956, 1166, 1180
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 2 cut(s) 466, 1173
BseDI CCNNGG 4 cut(s) 464, 625, 694, 1238
BseGI GGATG 6 cut(s) 167, 341, 358, 474, 689, 1268
BseLI CCNNNNNNNGG 3 cut(s) 631, 1172, 1239
BseMII CTCAG 2 cut(s) 295, 923
BseNI ACTGG 4 cut(s) 673, 956, 1166, 1180
BseRI GAGGAG 3 cut(s) 647, 1264, 1267
BseSI GKGCMC 2 cut(s) 985, 1267
BseX3I CGGCCG 1 cut(s) 772
BseXI GCAGC 1 cut(s) 155
BsgI GTGCAG 2 cut(s) 403, 786
Bsh1285I CGRYCG 1 cut(s) 775
BshFI GGCC 4 cut(s) 476, 672, 774, 1243
BsiEI CGRYCG 1 cut(s) 775
BsiHKAI GWGCWC 2 cut(s) 915, 1267
BsiSI CCGG 3 cut(s) 305, 775, 979
BslFI GGGAC 3 cut(s) 728, 1210, 1215
BslI CCNNNNNNNGG 3 cut(s) 631, 1172, 1239
BsmAI GTCTC 2 cut(s) 279, 594
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 3 cut(s) 728, 1210, 1215
BsnI GGCC 4 cut(s) 476, 672, 774, 1243
Bsp1286I GDGCHC 3 cut(s) 915, 985, 1267
Bsp13I TCCGGA 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 611
Bsp143I GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
BspACI CCGC 2 cut(s) 244, 456
BspANI GGCC 4 cut(s) 476, 672, 774, 1243
BspCNI CTCAG 2 cut(s) 294, 924
BspEI TCCGGA 1 cut(s) 304
BspHI TCATGA 2 cut(s) 201, 1123
BspLI GGNNCC 1 cut(s) 74
BspPI GGATC 5 cut(s) 12, 192, 224, 378, 1202
BsrGI TGTACA 1 cut(s) 611
BsrI ACTGG 4 cut(s) 673, 956, 1166, 1180
BssECI CCNNGG 4 cut(s) 464, 625, 694, 1238
BssMI GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
BssNAI GTATAC 1 cut(s) 1138
BssT1I CCWWGG 2 cut(s) 625, 1238
Bst1107I GTATAC 1 cut(s) 1138
Bst2UI CCWGG 2 cut(s) 466, 1173
Bst4CI ACNGT 3 cut(s) 987, 1252, 1262
Bst6I CTCTTC 3 cut(s) 166, 429, 869
BstAUI TGTACA 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 582, 1117
BstDEI CTNAG 4 cut(s) 48, 67, 281, 932
BstEII GGTNACC 2 cut(s) 842, 1175
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 6 cut(s) 167, 341, 358, 474, 689, 1268
BstHHI GCGC 1 cut(s) 1121
BstKTI GATC 9 cut(s) 7, 32, 187, 232, 373, 643, 751, 1129, 1210
BstMAI GTCTC 2 cut(s) 279, 594
BstMBI GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
BstMCI CGRYCG 1 cut(s) 775
BstMWI GCNNNNNNNGC 2 cut(s) 252, 1288
BstNI CCWGG 2 cut(s) 466, 1173
BstNSI RCATGY 1 cut(s) 1119
BstPI GGTNACC 2 cut(s) 842, 1175
BstSCI CCNGG 4 cut(s) 464, 774, 978, 1171
BstSLI GKGCMC 2 cut(s) 985, 1267
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 2 cut(s) 4, 370
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 2 cut(s) 4, 370
BstZ17I GTATAC 1 cut(s) 1138
BstZI CGGCCG 1 cut(s) 772
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 4 cut(s) 476, 672, 774, 1243
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 6 cut(s) 167, 341, 358, 474, 689, 1268
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 3 cut(s) 220, 983, 1257
Cac8I GCNNGC 2 cut(s) 582, 1117
CciI TCATGA 2 cut(s) 201, 1123
CfoI GCGC 1 cut(s) 1121
CsiI ACCWGGT 1 cut(s) 1171
Csp6I GTAC 2 cut(s) 612, 1169
CviQI GTAC 2 cut(s) 612, 1169
DdeI CTNAG 4 cut(s) 48, 67, 281, 932
DpnI GATC 9 cut(s) 6, 31, 186, 231, 372, 642, 750, 1128, 1209
DpnII GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
DraI TTTAAA 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 670, 772
EagI CGGCCG 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 166, 429, 869
EarI CTCTTC 3 cut(s) 166, 429, 869
EclXI CGGCCG 1 cut(s) 772
Eco130I CCWWGG 2 cut(s) 625, 1238
Eco147I AGGCCT 1 cut(s) 476
Eco52I CGGCCG 1 cut(s) 772
Eco57I CTGAAG 2 cut(s) 235, 411
Eco91I GGTNACC 2 cut(s) 842, 1175
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoO65I GGTNACC 2 cut(s) 842, 1175
EcoRII CCWGG 2 cut(s) 464, 1171
EcoT14I CCWWGG 2 cut(s) 625, 1238
ErhI CCWWGG 2 cut(s) 625, 1238
Esp3I CGTCTC 1 cut(s) 279
FaqI GGGAC 3 cut(s) 728, 1210, 1215
FauI CCCGC 1 cut(s) 463
FbaI TGATCA 2 cut(s) 640, 1126
FblI GTMKAC 1 cut(s) 1137
Fnu4HI GCNGC 2 cut(s) 144, 244
FokI GGATG 6 cut(s) 154, 348, 365, 481, 676, 1255
Fsp4HI GCNGC 2 cut(s) 144, 244
FspBI CTAG 2 cut(s) 210, 626
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 2 cut(s) 144, 244
HaeIII GGCC 4 cut(s) 476, 672, 774, 1243
HapII CCGG 3 cut(s) 305, 775, 979
HhaI GCGC 1 cut(s) 1121
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HindIII AAGCTT 2 cut(s) 50, 86
HinfI GANTC 4 cut(s) 136, 205, 635, 833
HpaII CCGG 3 cut(s) 305, 775, 979
HphI GGTGA 3 cut(s) 641, 746, 854
Hpy166II GTNNAC 2 cut(s) 1138, 1265
Hpy188I TCNGA 6 cut(s) 284, 391, 440, 640, 890, 940
Hpy188III TCNNGA 9 cut(s) 8, 79, 202, 296, 305, 746, 1034, 1043, 1124
Hpy8I GTNNAC 2 cut(s) 1138, 1265
HpyAV CCTTC 9 cut(s) 138, 283, 466, 537, 570, 1142, 1223, 1228, 1254
HpyCH4III ACNGT 3 cut(s) 987, 1252, 1262
HpyCH4IV ACGT 2 cut(s) 288, 893
HpyCH4V TGCA 8 cut(s) 15, 260, 420, 534, 584, 767, 973, 1265
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 1288
HpyF3I CTNAG 4 cut(s) 48, 67, 281, 932
HpySE526I ACGT 2 cut(s) 288, 893
HspAI GCGC 1 cut(s) 1119
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 2 cut(s) 640, 1126
Kzo9I GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 343
MabI ACCWGGT 1 cut(s) 1171
MaeI CTAG 2 cut(s) 210, 626
MaeII ACGT 2 cut(s) 288, 893
MaeIII GTNAC 5 cut(s) 215, 511, 521, 842, 1175
MalI GATC 9 cut(s) 6, 31, 186, 231, 372, 642, 750, 1128, 1209
MboI GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
MboII GAAGA 7 cut(s) 153, 241, 404, 416, 743, 828, 886
MflI RGATCY 2 cut(s) 4, 370
MhlI GDGCHC 3 cut(s) 915, 985, 1267
MluCI AATT 3 cut(s) 1072, 1141, 1200
MlyI GAGTC 2 cut(s) 644, 842
MmeI TCCRAC 2 cut(s) 577, 685
MroI TCCGGA 1 cut(s) 304
MseI TTAA 3 cut(s) 114, 378, 783
MslI CAYNNNNRTG 4 cut(s) 334, 648, 1104, 1128
MspI CCGG 3 cut(s) 305, 775, 979
MspR9I CCNGG 4 cut(s) 466, 776, 980, 1173
MvaI CCWGG 2 cut(s) 466, 1173
MwoI GCNNNNNNNGC 2 cut(s) 252, 1288
NciI CCSGG 2 cut(s) 776, 980
NdeII GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 3 cut(s) 215, 511, 842
NspI RCATGY 1 cut(s) 1119
PaeI GCATGC 1 cut(s) 1119
PagI TCATGA 2 cut(s) 201, 1123
PceI AGGCCT 1 cut(s) 476
PfeI GAWTC 2 cut(s) 136, 205
PkrI GCNGC 2 cut(s) 145, 245
PleI GAGTC 2 cut(s) 643, 841
PpsI GAGTC 2 cut(s) 643, 841
PshBI ATTAAT 1 cut(s) 783
Psp1406I AACGTT 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 464, 1171
PspEI GGTNACC 2 cut(s) 842, 1175
PspGI CCWGG 2 cut(s) 464, 1171
PspN4I GGNNCC 1 cut(s) 74
PsuI RGATCY 2 cut(s) 4, 370
RsaI GTAC 2 cut(s) 613, 1170
RsaNI GTAC 2 cut(s) 612, 1169
RseI CAYNNNNRTG 4 cut(s) 334, 648, 1104, 1128
SaqAI TTAA 3 cut(s) 114, 378, 783
SatI GCNGC 2 cut(s) 144, 244
Sau3AI GATC 9 cut(s) 4, 29, 184, 229, 370, 640, 748, 1126, 1207
SchI GAGTC 2 cut(s) 644, 842
ScrFI CCNGG 4 cut(s) 466, 776, 980, 1173
SduI GDGCHC 3 cut(s) 915, 985, 1267
SexAI ACCWGGT 1 cut(s) 1171
SfaNI GCATC 1 cut(s) 343
SmiMI CAYNNNNRTG 4 cut(s) 334, 648, 1104, 1128
SphI GCATGC 1 cut(s) 1119
Sse9I AATT 3 cut(s) 1072, 1141, 1200
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 2 cut(s) 244, 456
SspI AATATT 1 cut(s) 968
SspMI CTAG 2 cut(s) 210, 626
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 464, 774, 978, 1171
StyI CCWWGG 2 cut(s) 625, 1238
TaaI ACNGT 3 cut(s) 987, 1252, 1262
TaiI ACGT 2 cut(s) 291, 896
TaqI TCGA 6 cut(s) 9, 139, 295, 737, 1052, 1161
TasI AATT 3 cut(s) 1072, 1141, 1200
TatI WGTACW 1 cut(s) 611
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 2 cut(s) 136, 205
Tru1I TTAA 3 cut(s) 114, 378, 783
Tru9I TTAA 3 cut(s) 114, 378, 783
TscAI CASTG 3 cut(s) 220, 990, 1257
TseFI GTSAC 3 cut(s) 215, 511, 842
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 3 cut(s) 215, 511, 842
TspDTI ATGAA 4 cut(s) 315, 459, 485, 908
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 3 cut(s) 220, 990, 1257
VneI GTGCAC 1 cut(s) 1263
VspI ATTAAT 1 cut(s) 783
XagI CCTNNNNNAGG 1 cut(s) 629
XceI RCATGY 1 cut(s) 1119
XmaJI CCTAGG 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 1137
XspI CTAG 2 cut(s) 210, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.