Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

47033362 .. 47034531

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTGATCATCATCAAAGTGGTCCGAGCTTCAACCAGAATTACTGGAGATGATCATCTTCGTTTCAAAGCTGTCTGTTCTTCTTGGAACTCCATTGCACTATCCTACGCTGCTTCGATTATAAACCAAACTCCATGGCTCACTCTCCCTAGTGATGACCACACTCGCCGCTTCTATAGCCTTGAAGAGAAAAAGGTTTACACAGTTAAGAACTCGTTTCAAGACTTTCCTGGTGCTAGCTGGTGTGTGGGTTCATCTCATGGGAAACCCTCCCCCAAAAAGATCATAAATCTTCAACCTGCTTTTGCCAAAGAGTTGGATCTGGATTACACTTCCGATCGCGACAAGTTTTCCACAAATACTTACTTGGTGGAGTCCTCGGATGAGATAATGTCCGTGGTGCGGTGTATAGGGAACTTTGTCAATGAGGAGGGCAAAGCTATCCATGAGATAGACGTTCCTGACGAGCCCTACAGTCCTTGTCCCTATAGGACATTGCAATTTTATGTCTTCAAGCTAAATTTTGCGGCGAACAAGTGGGAGAAAGTGGACTGTTTGCCTAACTGTGCTTTGTTTTTGGGCGGTAGCCAATCAATATCATTGTCCACTAAAGATGTTTCAGGGTGCGAAGAAAACTCAATTTACTTCACAGATGATCGTTGGGATGAGATAGAACTGCTTGGTGATACTGATTACTATGGCGGCCATGACATGGGAGTGTACAACTTGGAAGACAAAGTCGTAAAGCAATTTTATCCATTTGATAAATGGAGAATTGATCCACCACCTTTTTGGATTGTTCCTAGTCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

272

Amino Acids

31.01

Weight (kDa)

5.01

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	55 - 242	3.3e-24	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccII	CGCG	1 cut(s)	342
AciI	CCGC	5 cut(s)	169, 403, 527, 582, 702
AclWI	GGATC	2 cut(s)	327, 773
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	1 cut(s)	520
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	402, 712
AgsI	TTSAA	6 cut(s)	33, 67, 185, 221, 296, 514
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	5 cut(s)	29, 71, 240, 440, 517
AluI	AGCT	5 cut(s)	29, 71, 240, 440, 517
AlwI	GGATC	2 cut(s)	327, 773
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	16, 695
AsuNHI	GCTAGC	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	2 cut(s)	502, 738
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	2 cut(s)	6, 52
BfaI	CTAG	3 cut(s)	150, 237, 804
BfmI	CTRYAG	3 cut(s)	175, 472, 487
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	4 cut(s)	111, 169, 528, 703
BlsI	GCNGC	4 cut(s)	112, 170, 529, 704
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	231
BmtI	GCTAGC	1 cut(s)	240
BpiI	GAAGAC	2 cut(s)	502, 738
BpmI	CTGGAG	1 cut(s)	66
BsaBI	GATNNNNATC	2 cut(s)	11, 54
BsaJI	CCNNGG	4 cut(s)	134, 378, 396, 809
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 712
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	2 cut(s)	93, 494
Bse8I	GATNNNNATC	2 cut(s)	11, 54
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	4 cut(s)	134, 378, 396, 809
BseGI	GGATG	2 cut(s)	388, 670
BseJI	GATNNNNATC	2 cut(s)	11, 54
BseLI	CCNNNNNNNGG	2 cut(s)	402, 712
BseMI	GCAATG	2 cut(s)	93, 494
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	705
BsiEI	CGRYCG	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	402, 712
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
Bsp19I	CCATGG	2 cut(s)	134, 809
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	5 cut(s)	169, 403, 527, 582, 702
BspANI	GGCC	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	327, 773
BsrDI	GCAATG	2 cut(s)	93, 494
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	134, 378, 396, 809
BssMI	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
BssT1I	CCWWGG	2 cut(s)	134, 809
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	205, 476, 554, 566
Bst6I	CTCTTC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	1 cut(s)	238
BstDSI	CCRYGG	3 cut(s)	134, 396, 809
BstF5I	GGATG	2 cut(s)	388, 670
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	7 cut(s)	9, 55, 285, 322, 340, 658, 781
BstMBI	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	3 cut(s)	175, 472, 487
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	2 cut(s)	502, 738
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	2 cut(s)	316, 792
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	705
BtgI	CCRYGG	3 cut(s)	134, 396, 809
BtsCI	GGATG	2 cut(s)	388, 670
BtuMI	TCGCGA	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	6 cut(s)	135, 260, 446, 707, 712, 810
CviQI	GTAC	1 cut(s)	721
DpnI	GATC	7 cut(s)	8, 54, 284, 321, 339, 657, 780
DpnII	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	134, 809
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	134, 809
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	2 cut(s)	134, 809
FaeI	CATG	6 cut(s)	138, 263, 449, 710, 715, 813
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	6 cut(s)	134, 259, 445, 706, 711, 809
FbaI	TGATCA	2 cut(s)	6, 52
Fnu4HI	GCNGC	4 cut(s)	111, 169, 528, 703
FokI	GGATG	2 cut(s)	395, 677
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	4 cut(s)	111, 169, 528, 703
FspBI	CTAG	3 cut(s)	150, 237, 804
GluI	GCNGC	4 cut(s)	111, 169, 528, 703
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	705
Hin1II	CATG	6 cut(s)	138, 263, 449, 710, 715, 813
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	2 cut(s)	16, 695
Hpy166II	GTNNAC	4 cut(s)	199, 550, 606, 721
Hpy188I	TCNGA	3 cut(s)	26, 337, 382
Hpy188III	TCNNGA	4 cut(s)	221, 323, 341, 461
Hpy8I	GTNNAC	4 cut(s)	199, 550, 606, 721
HpyCH4III	ACNGT	4 cut(s)	205, 476, 554, 566
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	2 cut(s)	98, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	6 cut(s)	138, 263, 449, 710, 715, 813
Ksp22I	TGATCA	2 cut(s)	6, 52
Kzo9I	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
LpnPI	CCDG	9 cut(s)	30, 49, 216, 226, 243, 308, 312, 474, 606
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	3 cut(s)	150, 237, 804
MaeII	ACGT	1 cut(s)	456
MalI	GATC	7 cut(s)	8, 54, 284, 321, 339, 657, 780
MboI	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
MboII	GAAGA	7 cut(s)	50, 72, 197, 284, 502, 641, 743
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	6 cut(s)	39, 500, 520, 639, 749, 774
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	4 cut(s)	280, 388, 421, 424
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	17, 716
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	177
NcoI	CCATGG	2 cut(s)	134, 809
NdeII	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	138, 263, 449, 710, 715, 813
NruI	TCGCGA	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PflFI	GACNNNGTC	1 cut(s)	737
PflMI	CCANNNNNTGG	1 cut(s)	712
PkrI	GCNGC	4 cut(s)	112, 170, 529, 704
Ple19I	CGATCG	1 cut(s)	340
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	737
PvuI	CGATCG	1 cut(s)	340
RruI	TCGCGA	1 cut(s)	342
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	17, 716
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	111, 169, 528, 703
Sau3AI	GATC	7 cut(s)	6, 52, 282, 319, 337, 655, 778
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	9 cut(s)	31, 73, 198, 242, 301, 442, 459, 519, 790
SfcI	CTRYAG	3 cut(s)	175, 472, 487
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	2 cut(s)	17, 716
Sse9I	AATT	6 cut(s)	39, 500, 520, 639, 749, 774
SsiI	CCGC	5 cut(s)	169, 403, 527, 582, 702
SspMI	CTAG	3 cut(s)	150, 237, 804
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	2 cut(s)	134, 809
TaaI	ACNGT	4 cut(s)	205, 476, 554, 566
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	1 cut(s)	116
TasI	AATT	6 cut(s)	39, 500, 520, 639, 749, 774
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	3 cut(s)	171, 530, 705
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	737
Van91I	CCANNNNNTGG	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	2 cut(s)	765, 789
XspI	CTAG	3 cut(s)	150, 237, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.