Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

2079260 .. 2080517

Gene Structure 1258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTTCCCCTCTTGGATAAAAAAGAGAGAGATAGATCAACGGTCAGCATTAGTCGAGAAAAAGAGCACGAAAAGGAGAAAGAGACCAAATACATCATGGTCATCATCATCAAACTGGTCCGAGCTTCAACCAGAATTACTGGAGATGATCATAAAAACATTCTCTTTCGTCAGCATGCTTCGGTTCAAAGCTGTCTGTTCTTCATGGAACTCTATTGCACAATCGATCTACGCTGCTTCGATAACAAACCGAACTCCATGGCTCATTATTCCTAGTGATGATGACCACACTCGCCGCTGCTTCTATAACCTTGAAGAGGAAAAGGTTTACACTGTTAAGAAATCGTTCCATGACTTTCATGGTGCTAGTTGTTGTGTTGGTTCATCTCATGGCGGTGGTTGCTATCCTCTCTACCGATCCGTCTCGCAACAAAAACTTCTCCGTCGCAATAATCTACGTATCCATCCCTCAAGACTTGCCTTCTACAATCATGGAGATGAGGAATGGACCGACTTAAATGGTGAGCATCAAGAATATTGTGATATTATATTCCACAATTACCAATTATTTGCGTTGGCTGGCAATGGATTTTTTGAATCTTGGCATTTAAGGGAACTCTCACCCCAAAAAGCCATAAATCTTCAACCTAGTTTTGCCAAAGAGATTGATCTGGATTACATTTCCCACCGTGATAAGTTTTCGACAAATACTTACTTGGTGGAGTCGTCGGGTGAGATATTGTCATCAGTGGTGCGGTGTATAGGGAACTTTGTCAATGAGGAGGGCAAAACTATCCATGAGATGGATGTTCTTGACGAGCTCAATAGTCCTTGTCCTTATAAGACATTGCAATTTTATGTCTTCAAGCTAAATTTTGCGGCCAACAAGTGGGAGAAAGTGGATTGTTTGCCTAACTGTGCTTTGTTTCTGGGGTGTAGCCAATCGATATCGCTGTCCACTAAAGATGTTTCAGGGTGTGAAGAAAACTCGATTTACTTCACAGATGATCGTTGGGATGAGATAGAACTGCTTGGTGATAATGATTCCTATGGCGGCCATGACATGGGAGTACGTGTACAACTTAGAAGACAAAGTTGTGAAGCAATTTTATTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

373

Amino Acids

43.0

Weight (kDa)

6.08

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	39 - 75	8.4e-06	F-box domain
Beta-prop_KIB1-4	PF03478	157 - 357	3.5e-31	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AccB7I	CCANNNNNTGG	3 cut(s)	802, 888, 1063
AciI	CCGC	5 cut(s)	295, 393, 754, 878, 1053
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	2 cut(s)	879, 1054
AcsI	RAATTY	1 cut(s)	871
AfaI	GTAC	2 cut(s)	1071, 1077
AfiI	CCNNNNNNNGG	4 cut(s)	316, 802, 888, 1063
AflIII	ACRYGT	1 cut(s)	1072
AgsI	TTSAA	6 cut(s)	128, 187, 314, 596, 644, 865
AluBI	AGCT	4 cut(s)	124, 191, 820, 868
AluI	AGCT	4 cut(s)	124, 191, 820, 868
Alw21I	GWGCWC	2 cut(s)	68, 822
Alw26I	GTCTC	2 cut(s)	76, 427
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	2 cut(s)	879, 1054
ApeKI	GCWGC	2 cut(s)	233, 297
ApoI	RAATTY	1 cut(s)	871
Asp700I	GAANNNNTTC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	117, 507
AsuHPI	GGTGA	4 cut(s)	533, 612, 743, 1046
AvaII	GGWCC	2 cut(s)	117, 507
BanII	GRGCYC	1 cut(s)	822
BbsI	GAAGAC	2 cut(s)	853, 1093
Bbv12I	GWGCWC	2 cut(s)	68, 822
BbvI	GCAGC	2 cut(s)	220, 284
BccI	CCATC	2 cut(s)	471, 796
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	76, 427
BfaI	CTAG	3 cut(s)	273, 366, 648
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	5 cut(s)	234, 295, 298, 879, 1054
BlsI	GCNGC	5 cut(s)	235, 296, 299, 880, 1055
Bme18I	GGWCC	2 cut(s)	117, 507
BmgT120I	GGNCC	2 cut(s)	117, 507
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	2 cut(s)	853, 1093
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	454
Bsa29I	ATCGAT	2 cut(s)	224, 944
BsaAI	YACGTR	2 cut(s)	458, 1073
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	1059, 1089
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 802, 888, 1063
Bse1I	ACTGG	2 cut(s)	119, 144
Bse3DI	GCAATG	2 cut(s)	589, 845
BseCI	ATCGAT	2 cut(s)	224, 944
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	3 cut(s)	463, 811, 1021
BseLI	CCNNNNNNNGG	4 cut(s)	316, 802, 888, 1063
BseMI	GCAATG	2 cut(s)	589, 845
BseNI	ACTGG	2 cut(s)	119, 144
BseRI	GAGGAG	1 cut(s)	794
BseXI	GCAGC	2 cut(s)	220, 284
BshFI	GGCC	2 cut(s)	881, 1056
BshVI	ATCGAT	2 cut(s)	224, 944
BsiHKAI	GWGCWC	2 cut(s)	68, 822
BslI	CCNNNNNNNGG	4 cut(s)	316, 802, 888, 1063
BsmAI	GTCTC	2 cut(s)	76, 427
BsmBI	CGTCTC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	881, 1056
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	68, 822
Bsp1407I	TGTACA	1 cut(s)	1075
Bsp143I	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
Bsp19I	CCATGG	1 cut(s)	257
BspACI	CCGC	5 cut(s)	295, 393, 754, 878, 1053
BspANI	GGCC	2 cut(s)	881, 1056
BspDI	ATCGAT	2 cut(s)	224, 944
BspPI	GGATC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	589, 845
BsrGI	TGTACA	1 cut(s)	1075
BsrI	ACTGG	2 cut(s)	119, 144
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	4 cut(s)	42, 334, 689, 917
Bst6I	CTCTTC	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	1075
BstBAI	YACGTR	2 cut(s)	458, 1073
BstC8I	GCNNGC	2 cut(s)	176, 580
BstDEI	CTNAG	1 cut(s)	1082
BstDSI	CCRYGG	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	3 cut(s)	463, 811, 1021
BstKTI	GATC	6 cut(s)	37, 150, 228, 419, 670, 1009
BstMAI	GTCTC	2 cut(s)	76, 427
BstMBI	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	178
BstSNI	TACGTA	1 cut(s)	458
BstV1I	GCAGC	2 cut(s)	220, 284
BstV2I	GAAGAC	2 cut(s)	853, 1093
Bsu15I	ATCGAT	2 cut(s)	224, 944
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	881, 1056
BsuTUI	ATCGAT	2 cut(s)	224, 944
BtgI	CCRYGG	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	463, 811, 1021
BtsIMutI	CAGTG	2 cut(s)	330, 753
Cac8I	GCNNGC	2 cut(s)	176, 580
Cfr13I	GGNCC	2 cut(s)	117, 507
ClaI	ATCGAT	2 cut(s)	224, 944
Csp6I	GTAC	2 cut(s)	1070, 1076
CviQI	GTAC	2 cut(s)	1070, 1076
DdeI	CTNAG	1 cut(s)	1082
DpnI	GATC	6 cut(s)	36, 149, 227, 418, 669, 1008
DpnII	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
EaeI	YGGCCR	2 cut(s)	879, 1054
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	820
Eco105I	TACGTA	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	822
Eco31I	GGTCTC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	948
Eco47I	GGWCC	2 cut(s)	117, 507
Eco53kI	GAGCTC	1 cut(s)	820
EcoICRI	GAGCTC	1 cut(s)	820
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	948
EcoT14I	CCWWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	822
ErhI	CCWWGG	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	5 cut(s)	234, 295, 298, 879, 1054
FokI	GGATG	3 cut(s)	450, 818, 1028
FriOI	GRGCYC	1 cut(s)	822
Fsp4HI	GCNGC	5 cut(s)	234, 295, 298, 879, 1054
FspBI	CTAG	3 cut(s)	273, 366, 648
GluI	GCNGC	5 cut(s)	234, 295, 298, 879, 1054
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	881, 1056
HinfI	GANTC	3 cut(s)	596, 722, 1043
HphI	GGTGA	4 cut(s)	533, 612, 743, 1046
Hpy166II	GTNNAC	3 cut(s)	328, 957, 1076
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	5 cut(s)	55, 471, 530, 671, 812
Hpy8I	GTNNAC	3 cut(s)	328, 957, 1076
Hpy99I	CGWCG	2 cut(s)	447, 730
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	4 cut(s)	42, 334, 689, 917
HpyCH4IV	ACGT	2 cut(s)	457, 1072
HpyCH4V	TGCA	2 cut(s)	218, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	1 cut(s)	1082
HpySE526I	ACGT	2 cut(s)	457, 1072
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
LpnPI	CCDG	7 cut(s)	100, 125, 144, 564, 656, 914, 957
Lsp1109I	GCAGC	2 cut(s)	220, 284
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	3 cut(s)	273, 366, 648
MaeII	ACGT	2 cut(s)	457, 1072
MalI	GATC	6 cut(s)	36, 149, 227, 418, 669, 1008
MboI	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
MboII	GAAGA	6 cut(s)	192, 326, 632, 853, 992, 1098
MhlI	GDGCHC	2 cut(s)	68, 822
MluCI	AATT	6 cut(s)	134, 556, 563, 851, 871, 1104
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	7 cut(s)	19, 310, 417, 478, 493, 772, 775
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	3 cut(s)	336, 515, 608
MslI	CAYNNNNRTG	2 cut(s)	393, 495
MspA1I	CMGCKG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	257
NdeII	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
NspI	RCATGY	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	596, 1043
PflMI	CCANNNNNTGG	3 cut(s)	802, 888, 1063
PkrI	GCNGC	5 cut(s)	235, 296, 299, 880, 1055
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
Ppu21I	YACGTR	2 cut(s)	458, 1073
PsiI	TTATAA	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	822
PspPI	GGNCC	2 cut(s)	117, 507
RsaI	GTAC	2 cut(s)	1071, 1077
RsaNI	GTAC	2 cut(s)	1070, 1076
RseI	CAYNNNNRTG	2 cut(s)	393, 495
SacI	GAGCTC	1 cut(s)	822
SaqAI	TTAA	3 cut(s)	336, 515, 608
SatI	GCNGC	5 cut(s)	234, 295, 298, 879, 1054
Sau3AI	GATC	6 cut(s)	34, 147, 225, 416, 667, 1006
Sau96I	GGNCC	2 cut(s)	117, 507
SchI	GAGTC	1 cut(s)	731
SduI	GDGCHC	2 cut(s)	68, 822
SetI	ASST	9 cut(s)	126, 193, 312, 327, 460, 649, 822, 870, 1075
SfaNI	GCATC	1 cut(s)	535
SinI	GGWCC	2 cut(s)	117, 507
SmiMI	CAYNNNNRTG	2 cut(s)	393, 495
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
SnaBI	TACGTA	1 cut(s)	458
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	6 cut(s)	134, 556, 563, 851, 871, 1104
SsiI	CCGC	5 cut(s)	295, 393, 754, 878, 1053
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	3 cut(s)	273, 366, 648
SstI	GAGCTC	1 cut(s)	822
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	4 cut(s)	42, 334, 689, 917
TaiI	ACGT	2 cut(s)	460, 1075
TaqI	TCGA	6 cut(s)	54, 224, 239, 701, 944, 989
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	6 cut(s)	134, 556, 563, 851, 871, 1104
TatI	WGTACW	1 cut(s)	1075
TauI	GCSGC	3 cut(s)	297, 881, 1056
TfiI	GAWTC	2 cut(s)	596, 1043
Tru1I	TTAA	3 cut(s)	336, 515, 608
Tru9I	TTAA	3 cut(s)	336, 515, 608
TscAI	CASTG	2 cut(s)	337, 753
TseI	GCWGC	2 cut(s)	233, 297
TspDTI	ATGAA	4 cut(s)	192, 347, 372, 1102
TspGWI	ACGGA	2 cut(s)	409, 431
TspRI	CASTG	2 cut(s)	337, 753
Van91I	CCANNNNNTGG	3 cut(s)	802, 888, 1063
VpaK11BI	GGWCC	2 cut(s)	117, 507
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	871
XceI	RCATGY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	2 cut(s)	93, 356
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	3 cut(s)	273, 366, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.