RLG00000036257

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
78128109 .. 78129281
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036257

Sequence Viewer

Length: 1173 bp
ATGGCCATGGCTAAGGCCGCCAATGAAATAGCTATGGATGACAAAATCGTCAATGGTTGCACGATTAACTGGTCTGATCTCCCATTCGATCTATTAGAGTTGATCTTGAAAAGACTTGCACTCGTCGACCTCACATGCTTTAAGCTTGTTTCTCCATCTTGGTATGCCGCTGCAAAATCTTATATCTCTGCCCCGTTTTACAGACCATTGCTTCCTCAAACTGCATGGCTCATGCTCCCTGGAGAACCCAAAAATATAGATGCCGGCCGCTTCTTTAGCCTCACAGAGAAAAAGGTTTACACCTTCAAAAACCTGTTTCGAGGCTTTTCTTATTCCGAAACATGTCTGGGTTCGTCACACGGGTGGCTGGTGATGTTTGACTCGACCACGTTCAGAGTCCATCTTCTCAATCCCATCTATAGGGTTAGAATTACACTCCCATCTCTAGAGTTTGAGCTTCCCATGCGCAGGGCTAGCAAAGTTGTACTCTCTTCGGATCCGTCTCGCAACAACAACTTTTACGTTGTGGTAAGCTATCAAAAAGTAGGGCCAAGATCACTAGCATTCCACAAGCATTGTGATGATGGAGACAACACTTGGACCGACTTGGCCACTGCAGATAAAAGATATGGTGAGATTATATTCCACAACAGCCATTTATTTGCATTATGCTTGGACTCAAACATAATTGAAGTTTGGGACCTTGGGGGAATCTATCCCTTCATAGCCATGGAATTCCAACCTCCAGAGAGGGACGTAGAACATCTTAGTTTTCGCTTTTATTTAGTGGAATCACTGGGTGAGCTTTTGTTTGTGGAGAAATGCATGGTTTCTGGTGTATTCATATATGATATTCATAAGTTAAACTTCACTGCCTATGTGTGGGAGAAATTGGAATGTTTGCAAGAGCAGGCTCTAGTTTTGAGCGAAGAAGAATCAACATCAATGTCATTATCCACTAGAGATTTCCCGGAACTTGAAGCAAACTGCATTTACATAGCCAAAAGAGAGGAAAGAAATTCTGATGCCCGTGCTGTTTATGAGAAGTGTCCAACAGTTGTAGTCTACAACTTGCAAAACAATGATTTCAAGTCGTATTATATGTACCAAGAGGATAAGCCCATATTGTATTCACCACTTGTTTGGATTGTCCCCAGTCCGTATGAGGTATAG

Protein Analysis

391

Amino Acids

45.07

Weight (kDa)

5.32

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 60 3.5e-08 F-box domain
Beta-prop_KIB1-4 PF03478 91 - 340 1.4e-44 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
Acc16I TGCGCA 1 cut(s) 467
AccI GTMKAC 2 cut(s) 126, 1065
AciI CCGC 3 cut(s) 18, 168, 268
AclWI GGATC 2 cut(s) 491, 504
AcoI YGGCCR 3 cut(s) 3, 265, 609
AcsI RAATTY 2 cut(s) 734, 1018
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 2 cut(s) 486, 1106
AfiI CCNNNNNNNGG 3 cut(s) 420, 468, 882
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 5 cut(s) 109, 307, 692, 980, 1090
AjnI CCWGG 1 cut(s) 238
AleI CACNNNNGTG 1 cut(s) 361
AluBI AGCT 5 cut(s) 32, 145, 457, 534, 805
AluI AGCT 5 cut(s) 32, 145, 457, 534, 805
Alw26I GTCTC 2 cut(s) 507, 582
AlwI GGATC 2 cut(s) 491, 504
AoxI GGCC 5 cut(s) 3, 15, 265, 548, 609
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 734, 1018
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 3 cut(s) 548, 600, 700
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 4 cut(s) 382, 644, 812, 1125
AsuNHI GCTAGC 1 cut(s) 473
AvaII GGWCC 2 cut(s) 600, 700
BalI TGGCCA 2 cut(s) 5, 611
BamHI GGATCC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 157
BccI CCATC 5 cut(s) 163, 408, 422, 448, 578
BciT130I CCWGG 1 cut(s) 240
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 2 cut(s) 507, 582
BfaI CTAG 5 cut(s) 446, 474, 560, 917, 960
BfmI CTRYAG 2 cut(s) 418, 615
BisI GCNGC 4 cut(s) 18, 168, 171, 268
BlsI GCNGC 4 cut(s) 19, 169, 172, 269
Bme1390I CCNGG 2 cut(s) 240, 971
Bme18I GGWCC 2 cut(s) 600, 700
BmgT120I GGNCC 3 cut(s) 548, 600, 700
BmiI GGNNCC 2 cut(s) 498, 701
BmrFI CCNGG 2 cut(s) 240, 971
BmrI ACTGGG 2 cut(s) 806, 1149
BmsI GCATC 2 cut(s) 250, 1015
BmtI GCTAGC 1 cut(s) 477
BmuI ACTGGG 2 cut(s) 806, 1149
BpmI CTGGAG 2 cut(s) 261, 729
Bpu10I CCTNAGC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 971
BsaJI CCNNGG 4 cut(s) 6, 238, 703, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 468, 882
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 74, 801, 1155
Bse3DI GCAATG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 6, 238, 703, 729
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 3 cut(s) 420, 468, 882
BseMI GCAATG 1 cut(s) 206
BseNI ACTGG 3 cut(s) 74, 801, 1155
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 5 cut(s) 5, 17, 267, 550, 611
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 264, 971
BslFI GGGAC 3 cut(s) 713, 767, 1136
BslI CCNNNNNNNGG 3 cut(s) 420, 468, 882
BsmAI GTCTC 2 cut(s) 507, 582
BsmBI CGTCTC 1 cut(s) 507
BsmFI GGGAC 3 cut(s) 713, 767, 1136
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 5 cut(s) 5, 17, 267, 550, 611
Bsp143I GATC 5 cut(s) 76, 88, 102, 496, 554
Bsp19I CCATGG 2 cut(s) 6, 729
BspACI CCGC 3 cut(s) 18, 168, 268
BspANI GGCC 5 cut(s) 5, 17, 267, 550, 611
BspLI GGNNCC 2 cut(s) 498, 701
BspMAI CTGCAG 1 cut(s) 619
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 491, 504
BsrDI GCAATG 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 3 cut(s) 74, 801, 1155
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 6, 238, 703, 729
BssMI GATC 5 cut(s) 76, 88, 102, 496, 554
BssT1I CCWWGG 3 cut(s) 6, 703, 729
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 1057
Bst6I CTCTTC 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 265, 475, 912
BstDEI CTNAG 2 cut(s) 12, 767
BstDSI CCRYGG 2 cut(s) 6, 729
BstF5I GGATG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 5 cut(s) 79, 91, 105, 499, 557
BstMAI GTCTC 2 cut(s) 507, 582
BstMBI GATC 5 cut(s) 76, 88, 102, 496, 554
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 4 cut(s) 17, 276, 463, 474
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 2 cut(s) 138, 345
BstSCI CCNGG 2 cut(s) 238, 969
BstSFI CTRYAG 2 cut(s) 418, 615
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 496
BstXI CCANNNNNNTGG 1 cut(s) 1143
BstYI RGATCY 1 cut(s) 496
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 5 cut(s) 5, 17, 267, 550, 611
BtgI CCRYGG 2 cut(s) 6, 729
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 2 cut(s) 612, 870
BtsIMutI CAGTG 3 cut(s) 612, 794, 870
Cac8I GCNNGC 3 cut(s) 265, 475, 912
CfoI GCGC 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 3 cut(s) 548, 600, 700
Csp6I GTAC 2 cut(s) 485, 1105
CspCI CAANNNNNGTGG 2 cut(s) 557, 592
CviAII CATG 8 cut(s) 7, 135, 225, 232, 342, 463, 730, 826
CviQI GTAC 2 cut(s) 485, 1105
DdeI CTNAG 2 cut(s) 12, 767
DpnI GATC 5 cut(s) 78, 90, 104, 498, 556
DpnII GATC 5 cut(s) 76, 88, 102, 496, 554
DraIII CACNNNGTG 1 cut(s) 800
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 3 cut(s) 3, 265, 609
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 6, 703, 729
Eco47I GGWCC 2 cut(s) 600, 700
Eco52I CGGCCG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 700
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 3 cut(s) 6, 703, 729
EcoT22I ATGCAT 1 cut(s) 827
ErhI CCWWGG 3 cut(s) 6, 703, 729
Esp3I CGTCTC 1 cut(s) 507
FaeI CATG 8 cut(s) 10, 138, 228, 235, 345, 466, 733, 829
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 3 cut(s) 713, 767, 1136
FatI CATG 8 cut(s) 6, 134, 224, 231, 341, 462, 729, 825
FblI GTMKAC 2 cut(s) 126, 1065
Fnu4HI GCNGC 4 cut(s) 18, 168, 171, 268
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 4 cut(s) 18, 168, 171, 268
FspBI CTAG 5 cut(s) 446, 474, 560, 917, 960
FspI TGCGCA 1 cut(s) 467
GlaI GCGC 1 cut(s) 467
GluI GCNGC 4 cut(s) 18, 168, 171, 268
GsuI CTGGAG 2 cut(s) 261, 729
HaeIII GGCC 5 cut(s) 5, 17, 267, 550, 611
HapII CCGG 2 cut(s) 264, 971
HhaI GCGC 1 cut(s) 468
Hin1II CATG 8 cut(s) 10, 138, 228, 235, 345, 466, 733, 829
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 6 cut(s) 380, 396, 677, 711, 791, 935
HpaII CCGG 2 cut(s) 264, 971
HphI GGTGA 4 cut(s) 382, 644, 812, 1125
Hpy166II GTNNAC 3 cut(s) 127, 298, 1066
Hpy188I TCNGA 5 cut(s) 76, 337, 395, 496, 1024
Hpy188III TCNNGA 3 cut(s) 106, 446, 746
Hpy8I GTNNAC 3 cut(s) 127, 298, 1066
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 313, 730
HpyCH4III ACNGT 1 cut(s) 1057
HpyCH4IV ACGT 3 cut(s) 389, 522, 756
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 276, 463, 474
HpyF3I CTNAG 2 cut(s) 12, 767
HpySE526I ACGT 3 cut(s) 389, 522, 756
Hsp92II CATG 8 cut(s) 10, 138, 228, 235, 345, 466, 733, 829
HspAI GCGC 1 cut(s) 466
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 5 cut(s) 76, 88, 102, 496, 554
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 250, 1015
MaeI CTAG 5 cut(s) 446, 474, 560, 917, 960
MaeII ACGT 3 cut(s) 389, 522, 756
MaeIII GTNAC 1 cut(s) 354
MalI GATC 5 cut(s) 78, 90, 104, 498, 556
MboI GATC 5 cut(s) 76, 88, 102, 496, 554
MboII GAAGA 4 cut(s) 395, 483, 941, 944
MflI RGATCY 1 cut(s) 496
MlsI TGGCCA 2 cut(s) 5, 611
MluCI AATT 5 cut(s) 429, 687, 734, 890, 1018
MluNI TGGCCA 2 cut(s) 5, 611
MlyI GAGTC 3 cut(s) 374, 405, 671
MmeI TCCRAC 2 cut(s) 763, 1076
MnlI CCTC 9 cut(s) 140, 225, 290, 314, 744, 753, 1003, 1105, 1159
Mox20I TGGCCA 2 cut(s) 5, 611
Mph1103I ATGCAT 1 cut(s) 827
MroNI GCCGGC 1 cut(s) 263
MscI TGGCCA 2 cut(s) 5, 611
MseI TTAA 3 cut(s) 66, 141, 863
MslI CAYNNNNRTG 3 cut(s) 361, 579, 728
Msp20I TGGCCA 2 cut(s) 5, 611
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 264, 971
MspR9I CCNGG 2 cut(s) 240, 971
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 4 cut(s) 17, 276, 463, 474
NaeI GCCGGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 971
NcoI CCATGG 2 cut(s) 6, 729
NdeII GATC 5 cut(s) 76, 88, 102, 496, 554
NgoMIV GCCGGC 1 cut(s) 263
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 8 cut(s) 10, 138, 228, 235, 345, 466, 733, 829
NlaIV GGNNCC 2 cut(s) 498, 701
NmuCI GTSAC 1 cut(s) 354
NsbI TGCGCA 1 cut(s) 467
NsiI ATGCAT 1 cut(s) 827
NspI RCATGY 2 cut(s) 138, 345
OliI CACNNNNGTG 1 cut(s) 361
PciI ACATGT 1 cut(s) 341
PctI GAATGC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 265
PfeI GAWTC 3 cut(s) 711, 791, 935
PfoI TCCNGGA 1 cut(s) 969
PkrI GCNGC 4 cut(s) 19, 169, 172, 269
PleI GAGTC 3 cut(s) 374, 404, 671
PpsI GAGTC 3 cut(s) 374, 404, 671
PpuMI RGGWCCY 1 cut(s) 700
PscI ACATGT 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 498, 701
PspPI GGNCC 3 cut(s) 548, 600, 700
PspPPI RGGWCCY 1 cut(s) 700
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 2 cut(s) 486, 1106
RsaNI GTAC 2 cut(s) 485, 1105
RseI CAYNNNNRTG 3 cut(s) 361, 579, 728
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 66, 141, 863
SatI GCNGC 4 cut(s) 18, 168, 171, 268
Sau3AI GATC 5 cut(s) 76, 88, 102, 496, 554
Sau96I GGNCC 3 cut(s) 548, 600, 700
SchI GAGTC 3 cut(s) 374, 405, 671
ScrFI CCNGG 2 cut(s) 240, 971
SfaNI GCATC 2 cut(s) 250, 1015
SfcI CTRYAG 2 cut(s) 418, 615
SinI GGWCC 2 cut(s) 600, 700
SmiMI CAYNNNNRTG 3 cut(s) 361, 579, 728
Sse9I AATT 5 cut(s) 429, 687, 734, 890, 1018
SsiI CCGC 3 cut(s) 18, 168, 268
SspMI CTAG 5 cut(s) 446, 474, 560, 917, 960
StyD4I CCNGG 2 cut(s) 238, 969
StyI CCWWGG 3 cut(s) 6, 703, 729
TaaI ACNGT 1 cut(s) 1057
TaiI ACGT 3 cut(s) 392, 525, 759
TaqI TCGA 4 cut(s) 87, 126, 319, 383
TaqII GACCGA 1 cut(s) 617
TasI AATT 5 cut(s) 429, 687, 734, 890, 1018
TatI WGTACW 1 cut(s) 484
TauI GCSGC 3 cut(s) 20, 170, 270
TfiI GAWTC 3 cut(s) 711, 791, 935
Tru1I TTAA 3 cut(s) 66, 141, 863
Tru9I TTAA 3 cut(s) 66, 141, 863
TscAI CASTG 3 cut(s) 619, 801, 877
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 39, 712, 832, 845
TspGWI ACGGA 2 cut(s) 489, 1149
TspRI CASTG 3 cut(s) 619, 801, 877
VpaK11BI GGWCC 2 cut(s) 600, 700
XapI RAATTY 2 cut(s) 734, 1018
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 2 cut(s) 138, 345
XmiI GTMKAC 2 cut(s) 126, 1065
XspI CTAG 5 cut(s) 446, 474, 560, 917, 960
Zsp2I ATGCAT 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.