Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

34250502 .. 34251840

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCCGAGGAAGACAAAGTCATCGGCTGTGACTGCATTATTCCAACCAAATCAAGACGTAACTGGTCTGAGCTCCGATTAGAGCTATTAGAGTTGATCTTGAAAAGACTTGCTCTCGTTGACATGGCTCGCTTTGAACTCGTTTCTTTATCCTACCTCTCAGAGAAAACGGTTTACACCATTAGGAACCTGTTTGAAGGCTTTGCTGGTGAACGACAAAGGTGTCTGATCGGTTCCTCATACGGCTGGCTGGTGACGAAGGACGTCGATTACAGAATACACCTTCACAACCCTATCTCTGGGGTTAGAATTATACTCCCACCTCTGGAGTTTTGTATCATCCTCAGAGTTTTCCTATCCTCGGTTCCTTCTTGGAGCAACACCTTTTACGTTGGGGCAATTTATTACATGACGAAAGAAGGTTCAAAAATAGCATTCCATAAGCATGGTGATCATGATGGAAACAACAACACTGCGTGGACTGATTTGGACTCAGAATCAATTTCAGTTTGGGATTTCCGGAGAACCAATCCCATCAAAACCTGCATGGATTTCCAACCTCCGGAGAGGGAAGTAAGACAACATAGTTATCAACTTTACTTGGTGGAATCACAAGGTGAGCTTTTGTTTGTGGAGAAACTCATGAATCCGATTTTCGGTCAATTCTACTATGATGTTCATAAACTAAACTTCAGTGCCTGCAACAAGGTGGAATGTTTAAAGGTGGAACGTCTGCAGGAGCGGTGTCTGGTTTTGAGTGCATACGAACCAGCAGCATCAACATCATTATCCACCCTGGACTTTCCAGAACTTGAAGCAAACTCCATTTATGTTACCCAAGAAGAAAGTACTCTGCTTCAAGGTAATCATCAGCTGTATTCAAAAGTAGAAGCATACAATCTGGAAAATAAAGGTTTCAAGACTATTTTTACATCCGAAGTGTATAGGCGCGGTACTTTACATTCACCACTCCTTTGGATTGTTCCAAATCCATGTAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

335

Amino Acids

38.65

Weight (kDa)

6.03

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	54 - 165	3.6e-14	KIB1-4 beta-propeller
Beta-prop_KIB1-4	PF03478	166 - 286	3.5e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	222
AatII	GACGTC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	742
AccII	CGCG	1 cut(s)	951
AccIII	TCCGGA	2 cut(s)	519, 562
AciI	CCGC	2 cut(s)	742, 951
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	676
AcyI	GRCGYC	1 cut(s)	264
AdeI	CACNNNGTG	2 cut(s)	477, 617
AfaI	GTAC	2 cut(s)	850, 955
AfiI	CCNNNNNNNGG	5 cut(s)	299, 325, 361, 562, 656
AgsI	TTSAA	8 cut(s)	103, 137, 197, 426, 815, 860, 882, 919
AjnI	CCWGG	1 cut(s)	795
AluBI	AGCT	4 cut(s)	73, 85, 622, 874
AluI	AGCT	4 cut(s)	73, 85, 622, 874
Alw21I	GWGCWC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	699
Aor13HI	TCCGGA	2 cut(s)	519, 562
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	773
AspLEI	GCGC	1 cut(s)	951
AsuHPI	GGTGA	5 cut(s)	221, 265, 461, 629, 957
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	2 cut(s)	452, 542
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	797
BclI	TGATCA	1 cut(s)	451
BfmI	CTRYAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	551
BisI	GCNGC	1 cut(s)	774
BlsI	GCNGC	1 cut(s)	775
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	797
BmiI	GGNNCC	3 cut(s)	188, 235, 366
BmrFI	CCNGG	1 cut(s)	797
BmsI	GCATC	1 cut(s)	785
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	6, 360, 795
BsaWI	WCCGGW	2 cut(s)	519, 562
Bsc4I	CCNNNNNNNGG	5 cut(s)	299, 325, 361, 562, 656
Bse1I	ACTGG	1 cut(s)	68
BseAI	TCCGGA	2 cut(s)	519, 562
BseBI	CCWGG	1 cut(s)	797
BseDI	CCNNGG	3 cut(s)	6, 360, 795
BseGI	GGATG	2 cut(s)	339, 932
BseLI	CCNNNNNNNGG	5 cut(s)	299, 325, 361, 562, 656
BseMII	CTCAG	4 cut(s)	60, 174, 358, 507
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	951
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	520, 563
BslI	CCNNNNNNNGG	5 cut(s)	299, 325, 361, 562, 656
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp13I	TCCGGA	2 cut(s)	519, 562
Bsp143I	GATC	3 cut(s)	96, 228, 451
BspACI	CCGC	2 cut(s)	742, 951
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	61, 173, 357, 506
BspEI	TCCGGA	2 cut(s)	519, 562
BspFNI	CGCG	1 cut(s)	951
BspHI	TCATGA	2 cut(s)	454, 642
BspLI	GGNNCC	3 cut(s)	188, 235, 366
BspMAI	CTGCAG	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	6, 360, 795
BssMI	GATC	3 cut(s)	96, 228, 451
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	130, 248, 700
BstDEI	CTNAG	4 cut(s)	69, 160, 344, 493
BstF5I	GGATG	2 cut(s)	339, 932
BstFNI	CGCG	1 cut(s)	951
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	3 cut(s)	99, 231, 454
BstMBI	GATC	3 cut(s)	96, 228, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	797
BstSCI	CCNGG	1 cut(s)	795
BstSFI	CTRYAG	1 cut(s)	734
BstUI	CGCG	1 cut(s)	951
BstV1I	GCAGC	1 cut(s)	785
BstV2I	GAAGAC	1 cut(s)	18
BstXI	CCANNNNNNTGG	2 cut(s)	446, 975
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	339, 932
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	471, 700
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	3 cut(s)	130, 248, 700
CaiI	CAGNNNCTG	1 cut(s)	699
CciI	TCATGA	2 cut(s)	454, 642
CfoI	GCGC	1 cut(s)	951
Csp6I	GTAC	2 cut(s)	849, 954
CviAII	CATG	7 cut(s)	124, 409, 446, 455, 547, 643, 993
CviQI	GTAC	2 cut(s)	849, 954
DdeI	CTNAG	4 cut(s)	69, 160, 344, 493
DpnI	GATC	3 cut(s)	98, 230, 453
DpnII	GATC	3 cut(s)	96, 228, 451
DraI	TTTAAA	1 cut(s)	720
DraIII	CACNNNGTG	2 cut(s)	477, 617
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	676
EcoICRI	GAGCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	795
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	7 cut(s)	127, 412, 449, 458, 550, 646, 996
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	7 cut(s)	123, 408, 445, 454, 546, 642, 992
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	774
FokI	GGATG	2 cut(s)	326, 919
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	774
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	1 cut(s)	774
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	520, 563
HhaI	GCGC	1 cut(s)	951
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	7 cut(s)	127, 412, 449, 458, 550, 646, 996
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	491, 497, 608, 646
HpaII	CCGG	2 cut(s)	520, 563
HphI	GGTGA	5 cut(s)	221, 265, 461, 629, 957
Hpy166II	GTNNAC	4 cut(s)	121, 175, 212, 480
Hpy188I	TCNGA	8 cut(s)	70, 77, 163, 228, 347, 496, 651, 937
Hpy8I	GTNNAC	4 cut(s)	121, 175, 212, 480
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	5 cut(s)	191, 253, 293, 378, 413
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	4 cut(s)	58, 264, 390, 730
HpyCH4V	TGCA	5 cut(s)	36, 546, 702, 736, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	4 cut(s)	69, 160, 344, 493
HpySE526I	ACGT	4 cut(s)	58, 264, 390, 730
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	7 cut(s)	127, 412, 449, 458, 550, 646, 996
HspAI	GCGC	1 cut(s)	949
Kpn2I	TCCGGA	2 cut(s)	519, 562
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	96, 228, 451
LmnI	GCTCC	3 cut(s)	78, 375, 739
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	1 cut(s)	785
MaeII	ACGT	4 cut(s)	58, 264, 390, 730
MaeIII	GTNAC	4 cut(s)	29, 59, 253, 832
MalI	GATC	3 cut(s)	98, 230, 453
MbiI	CCGCTC	1 cut(s)	742
MboI	GATC	3 cut(s)	96, 228, 451
MboII	GAAGA	2 cut(s)	23, 854
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	4 cut(s)	309, 399, 501, 662
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	68, 580
MnlI	CCTC	7 cut(s)	167, 247, 333, 353, 370, 561, 570
MroI	TCCGGA	2 cut(s)	519, 562
MseI	TTAA	1 cut(s)	719
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	874
MspI	CCGG	2 cut(s)	520, 563
MspR9I	CCNGG	1 cut(s)	797
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	797
MvnI	CGCG	1 cut(s)	951
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	3 cut(s)	96, 228, 451
NlaIII	CATG	7 cut(s)	127, 412, 449, 458, 550, 646, 996
NlaIV	GGNNCC	3 cut(s)	188, 235, 366
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	29, 253
PagI	TCATGA	2 cut(s)	454, 642
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	3 cut(s)	497, 608, 646
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	775
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	3 cut(s)	188, 235, 366
PstI	CTGCAG	1 cut(s)	738
PstNI	CAGNNNCTG	1 cut(s)	699
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	874
RsaI	GTAC	2 cut(s)	850, 955
RsaNI	GTAC	2 cut(s)	849, 954
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	1 cut(s)	774
Sau3AI	GATC	3 cut(s)	96, 228, 451
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	797
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	785
SfcI	CTRYAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	4 cut(s)	309, 399, 501, 662
SsiI	CCGC	2 cut(s)	742, 951
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	795
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	4 cut(s)	61, 267, 393, 733
TaqI	TCGA	1 cut(s)	267
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	4 cut(s)	309, 399, 501, 662
TatI	WGTACW	1 cut(s)	848
TfiI	GAWTC	3 cut(s)	497, 608, 646
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TscAI	CASTG	2 cut(s)	478, 700
TseFI	GTSAC	2 cut(s)	29, 253
TseI	GCWGC	1 cut(s)	773
Tsp45I	GTSAC	2 cut(s)	29, 253
TspDTI	ATGAA	2 cut(s)	659, 668
TspRI	CASTG	2 cut(s)	478, 700
Tth111I	GACNNNGTC	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	265
ZrmI	AGTACT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.