FvH4_4g30091

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
29899982 .. 29901484
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30091.t1

Sequence Viewer

Length: 1503 bp
ATGGGAACCAAAAAGAGGAGGCTTTCAGATCAAAACACGATTGCAGGTGAACCATGCACCAGTAAAAAGAGGAGGCTTTCAGACAATGATACAATTTCAAGTGTATGCACCAGCACAAGTAAGAGGAAGAGGCTTTCAGCAGAAGAAAATATGACTTCAAGTAACGCATGCAAAACAAGTAAAAAGAAGAAGCTTTCAAGTCAGTTGTGCACCACCACAAGTAAAAGGAGTAGTAAAAGGAGAAGAGTTTCAGACAATGAAAGTGAGGTATGCAAAACAAATAAAAGGAAGAAGCTTTCAAGTCAGTTGTGCACCACCACAAGTAAAAGGAGAAGAGTTTCAGACGATGATGCCATTCCTACTAAAAGGAGGAGAATCACCTCCCCAACTCTCCCACCTGAAATCTTGGAGTTAATCTTCAAAAAGCTTCCTGCCTTGGACGCAGTTCGCTTCCCAGCAATTTGTCATTCTTGGAAACTGGCTGCAAAATCATCTGTTTCATCTACATACACACCTTTGTCACAACAACCACCAATGCTCATGCTCCCTAGTGTTGCTAAAGAACAAGACAAGTCTAGCAGACCCTTCTTCAGCTCCGCAGAGAAGAAATTCTATAGCATCAACAACGAGTTCCCACAAGATGATGAAACTGTGCTTTCCTCACATGGGTGGCTACTAATGTATAATTATAAACATAATTTTAAACAGTTGAACTTGCCCTATCTCTTTAACCCACTTTCTGGTGCTAGAATCAAACTCCCTGAACTCCCATTGATCACTGGCTATCGGCCACCTCCCTATAGAGCGGCAATCTCCACCGACCCGTCTCGCAACAACAATTTCATCGTAGTCATTGTGTTGAAACTATTTCCTCAAACTAGGGTGATATTCTTGAAGCATGGAGACAGCAAATGGACCGACTTGGGTGAGTTACATGACGATTTTGCCTTGAAGACTGAGATTATGTTCTATGAAGGCCAGTTATTTGTAGTATCCATAAACCACATTGTGGTTTGGGACTTCCGGGGTGAATCATCTCCCTCAAAAACTACGGATTTTCAAATCTCAGGGTTGAAGAGAGGGAAGGAGATGTTTACTTATATAGTGGAGTCACAAGGTGAGATATTGTATGTGAAGCAATTTTCAAGGATAAAACCTGATGACTTGTATGTCTACAGATTAGTTTTCAAGGATAGAGAATGGAAAAAGGTAGAAAGTTTGATCGGCCGCGCTCTATTTCTTGGTGGAAAGGAAACAGCAATGTCATTGTCTACTCGGAATTTCCCAACTGTTGAAGGCAACTCGATTTACTTAGTAGAAATATATCAGCCAGCAGAACCAAAGCTGCGTGAATTCAGAGTACTACAATACAACTTGAAGGTTAAAAAGAAGAAAAAACGAGAGCAAATAAAACAGTTCACAGTGAATGAAAGAAGCTATTATCCAACAAGCCTTTGGATATTACCTAATCCAATATTGCATGGGGAGAAGAAGCACAAATAA

Protein Analysis

501

Amino Acids

57.65

Weight (kDa)

9.9

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 196 - 445 2.6e-38 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 1169
Acc36I ACCTGC 1 cut(s) 35
AccB7I CCANNNNNTGG 2 cut(s) 740, 1009
AccBSI CCGCTC 1 cut(s) 806
AccI GTMKAC 2 cut(s) 1173, 1271
AccII CGCG 1 cut(s) 1230
AciI CCGC 3 cut(s) 597, 806, 1228
AcoI YGGCCR 2 cut(s) 788, 1225
AcsI RAATTY 3 cut(s) 608, 1279, 1352
AcuI CTGAAG 1 cut(s) 574
AdeI CACNNNGTG 2 cut(s) 1009, 1118
AfaI GTAC 1 cut(s) 1362
AfiI CCNNNNNNNGG 4 cut(s) 15, 666, 740, 1009
AleI CACNNNNGTG 1 cut(s) 667
AluBI AGCT 6 cut(s) 193, 295, 427, 594, 1345, 1437
AluI AGCT 6 cut(s) 193, 295, 427, 594, 1345, 1437
Alw21I GWGCWC 2 cut(s) 212, 314
Alw26I GTCTC 2 cut(s) 831, 897
Alw44I GTGCAC 2 cut(s) 208, 310
AoxI GGCC 3 cut(s) 788, 976, 1225
ApaLI GTGCAC 2 cut(s) 208, 310
ApeKI GCWGC 2 cut(s) 482, 1345
ApoI RAATTY 3 cut(s) 608, 1279, 1352
Asp700I GAANNNNTTC 3 cut(s) 247, 337, 608
AspLEI GCGC 1 cut(s) 1232
AspS9I GGNCC 1 cut(s) 915
AsuC2I CCSGG 1 cut(s) 1025
AsuHPI GGTGA 6 cut(s) 59, 370, 895, 938, 1040, 1130
AvaII GGWCC 1 cut(s) 915
BaeGI GKGCMC 2 cut(s) 212, 314
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 2 cut(s) 212, 314
BbvI GCAGC 2 cut(s) 469, 1332
BciVI GTATCC 1 cut(s) 1003
BclI TGATCA 1 cut(s) 774
BcnI CCSGG 1 cut(s) 1025
BcoDI GTCTC 2 cut(s) 831, 897
BfaI CTAG 4 cut(s) 549, 576, 747, 879
BfmI CTRYAG 3 cut(s) 613, 799, 1174
BfuAI ACCTGC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 1003
BisI GCNGC 4 cut(s) 483, 807, 1228, 1346
BlsI GCNGC 4 cut(s) 484, 808, 1229, 1347
BmcAI AGTACT 1 cut(s) 1362
Bme1390I CCNGG 1 cut(s) 1025
Bme18I GGWCC 1 cut(s) 915
BmgT120I GGNCC 1 cut(s) 915
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 1025
BmsI GCATC 2 cut(s) 340, 627
BpiI GAAGAC 1 cut(s) 959
BpuMI CCSGG 1 cut(s) 1025
BsaJI CCNNGG 2 cut(s) 435, 1024
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 666, 740, 1009
Bse1I ACTGG 4 cut(s) 60, 483, 784, 979
Bse3DI GCAATG 1 cut(s) 1266
BseDI CCNNGG 2 cut(s) 435, 1024
BseLI CCNNNNNNNGG 4 cut(s) 15, 666, 740, 1009
BseMI GCAATG 1 cut(s) 1266
BseMII CTCAG 2 cut(s) 948, 1080
BseNI ACTGG 4 cut(s) 60, 483, 784, 979
BseRI GAGGAG 3 cut(s) 31, 85, 385
BseSI GKGCMC 2 cut(s) 212, 314
BseX3I CGGCCG 1 cut(s) 1225
BseXI GCAGC 2 cut(s) 469, 1332
BseYI CCCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 1230
Bsh1285I CGRYCG 1 cut(s) 1228
BshFI GGCC 3 cut(s) 790, 978, 1227
BsiEI CGRYCG 1 cut(s) 1228
BsiHKAI GWGCWC 2 cut(s) 212, 314
BsiSI CCGG 1 cut(s) 1024
BslFI GGGAC 1 cut(s) 1031
BslI CCNNNNNNNGG 4 cut(s) 15, 666, 740, 1009
BsmAI GTCTC 2 cut(s) 831, 897
BsmBI CGTCTC 1 cut(s) 831
BsmFI GGGAC 1 cut(s) 1031
BsnI GGCC 3 cut(s) 790, 978, 1227
Bsp1286I GDGCHC 2 cut(s) 212, 314
Bsp143I GATC 3 cut(s) 28, 774, 1221
BspACI CCGC 3 cut(s) 597, 806, 1228
BspANI GGCC 3 cut(s) 790, 978, 1227
BspCNI CTCAG 2 cut(s) 949, 1079
BspFNI CGCG 1 cut(s) 1230
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 1266
BsrI ACTGG 4 cut(s) 60, 483, 784, 979
BssECI CCNNGG 2 cut(s) 435, 1024
BssMI GATC 3 cut(s) 28, 774, 1221
BssT1I CCWWGG 1 cut(s) 435
Bst4CI ACNGT 5 cut(s) 652, 708, 1291, 1416, 1423
Bst6I CTCTTC 4 cut(s) 122, 238, 328, 1070
BstC8I GCNNGC 2 cut(s) 169, 1332
BstDEI CTNAG 3 cut(s) 957, 1066, 1312
BstFNI CGCG 1 cut(s) 1230
BstHHI GCGC 1 cut(s) 1232
BstKTI GATC 3 cut(s) 31, 777, 1224
BstMAI GTCTC 2 cut(s) 831, 897
BstMBI GATC 3 cut(s) 28, 774, 1221
BstMCI CGRYCG 1 cut(s) 1228
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 1023
BstSFI CTRYAG 3 cut(s) 613, 799, 1174
BstSLI GKGCMC 2 cut(s) 212, 314
BstUI CGCG 1 cut(s) 1230
BstV1I GCAGC 2 cut(s) 469, 1332
BstV2I GAAGAC 1 cut(s) 959
BstZI CGGCCG 1 cut(s) 1225
BsuI GTATCC 1 cut(s) 1003
BsuRI GGCC 3 cut(s) 790, 978, 1227
BtsIMutI CAGTG 2 cut(s) 777, 1428
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 2 cut(s) 169, 1332
CfoI GCGC 1 cut(s) 1232
Cfr13I GGNCC 1 cut(s) 915
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 1361
CviAII CATG 7 cut(s) 54, 168, 541, 665, 899, 935, 1481
CviQI GTAC 1 cut(s) 1361
DdeI CTNAG 3 cut(s) 957, 1066, 1312
DpnI GATC 3 cut(s) 30, 776, 1223
DpnII GATC 3 cut(s) 28, 774, 1221
DraI TTTAAA 1 cut(s) 703
DraIII CACNNNGTG 2 cut(s) 1009, 1118
DrdI GACNNNNNNGTC 1 cut(s) 1169
DseDI GACNNNNNNGTC 1 cut(s) 1169
EaeI YGGCCR 2 cut(s) 788, 1225
EagI CGGCCG 1 cut(s) 1225
Eam1104I CTCTTC 4 cut(s) 122, 238, 328, 1070
EarI CTCTTC 4 cut(s) 122, 238, 328, 1070
EclXI CGGCCG 1 cut(s) 1225
Eco130I CCWWGG 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 915
Eco52I CGGCCG 1 cut(s) 1225
Eco57I CTGAAG 1 cut(s) 574
EcoRI GAATTC 1 cut(s) 1352
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 831
FaeI CATG 7 cut(s) 57, 171, 544, 668, 902, 938, 1484
FaqI GGGAC 1 cut(s) 1031
FatI CATG 7 cut(s) 53, 167, 540, 664, 898, 934, 1480
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 2 cut(s) 1173, 1271
Fnu4HI GCNGC 4 cut(s) 483, 807, 1228, 1346
Fsp4HI GCNGC 4 cut(s) 483, 807, 1228, 1346
FspBI CTAG 4 cut(s) 549, 576, 747, 879
GlaI GCGC 1 cut(s) 1231
GluI GCNGC 4 cut(s) 483, 807, 1228, 1346
GsaI CCCAGC 1 cut(s) 458
HaeIII GGCC 3 cut(s) 790, 978, 1227
HapII CCGG 1 cut(s) 1024
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 1232
Hin1II CATG 7 cut(s) 57, 171, 544, 668, 902, 938, 1484
Hin6I GCGC 1 cut(s) 1230
HinP1I GCGC 1 cut(s) 1230
HindIII AAGCTT 3 cut(s) 191, 293, 425
HinfI GANTC 4 cut(s) 375, 750, 1031, 1109
HpaII CCGG 1 cut(s) 1024
HphI GGTGA 6 cut(s) 59, 370, 895, 938, 1040, 1130
Hpy166II GTNNAC 7 cut(s) 50, 210, 312, 1095, 1174, 1272, 1419
Hpy188I TCNGA 6 cut(s) 28, 82, 253, 343, 1278, 1358
Hpy188III TCNNGA 1 cut(s) 892
Hpy8I GTNNAC 7 cut(s) 50, 210, 312, 1095, 1174, 1272, 1419
HpyAV CCTTC 5 cut(s) 595, 968, 1078, 1289, 1372
HpyCH4III ACNGT 5 cut(s) 652, 708, 1291, 1416, 1423
HpyCH4V TGCA 9 cut(s) 44, 57, 108, 171, 210, 273, 312, 485, 1480
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 3 cut(s) 957, 1066, 1312
Hsp92II CATG 7 cut(s) 57, 171, 544, 668, 902, 938, 1484
HspAI GCGC 1 cut(s) 1230
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 3 cut(s) 28, 774, 1221
LmnI GCTCC 2 cut(s) 549, 599
Lsp1109I GCAGC 2 cut(s) 469, 1332
LweI GCATC 2 cut(s) 340, 627
MaeI CTAG 4 cut(s) 549, 576, 747, 879
MaeIII GTNAC 4 cut(s) 161, 519, 930, 1110
MalI GATC 3 cut(s) 30, 776, 1223
MbiI CCGCTC 1 cut(s) 806
MboI GATC 3 cut(s) 28, 774, 1221
MhlI GDGCHC 2 cut(s) 212, 314
MluCI AATT 9 cut(s) 93, 459, 608, 685, 697, 838, 1139, 1279, 1352
MlyI GAGTC 1 cut(s) 1118
MmeI TCCRAC 1 cut(s) 1469
MroXI GAANNNNTTC 3 cut(s) 247, 337, 608
MseI TTAA 4 cut(s) 413, 702, 729, 1383
MslI CAYNNNNRTG 1 cut(s) 667
MspI CCGG 1 cut(s) 1024
MspR9I CCNGG 1 cut(s) 1025
MvnI CGCG 1 cut(s) 1230
MwoI GCNNNNNNNGC 1 cut(s) 440
NciI CCSGG 1 cut(s) 1025
NdeII GATC 3 cut(s) 28, 774, 1221
NlaIII CATG 7 cut(s) 57, 171, 544, 668, 902, 938, 1484
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 519, 1110
NspI RCATGY 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 667
PaeI GCATGC 1 cut(s) 171
PaqCI CACCTGC 1 cut(s) 35
PdmI GAANNNNTTC 3 cut(s) 247, 337, 608
PfeI GAWTC 3 cut(s) 375, 750, 1031
PflMI CCANNNNNTGG 2 cut(s) 740, 1009
PkrI GCNGC 4 cut(s) 484, 808, 1229, 1347
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
PsiI TTATAA 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 915
RsaI GTAC 1 cut(s) 1362
RsaNI GTAC 1 cut(s) 1361
RseI CAYNNNNRTG 1 cut(s) 667
SaqAI TTAA 4 cut(s) 413, 702, 729, 1383
SatI GCNGC 4 cut(s) 483, 807, 1228, 1346
Sau3AI GATC 3 cut(s) 28, 774, 1221
Sau96I GGNCC 1 cut(s) 915
ScaI AGTACT 1 cut(s) 1362
SchI GAGTC 1 cut(s) 1118
ScrFI CCNGG 1 cut(s) 1025
SduI GDGCHC 2 cut(s) 212, 314
SfaNI GCATC 2 cut(s) 340, 627
SfcI CTRYAG 3 cut(s) 613, 799, 1174
SinI GGWCC 1 cut(s) 915
SmiMI CAYNNNNRTG 1 cut(s) 667
SphI GCATGC 1 cut(s) 171
Sse9I AATT 9 cut(s) 93, 459, 608, 685, 697, 838, 1139, 1279, 1352
SsiI CCGC 3 cut(s) 597, 806, 1228
SspI AATATT 1 cut(s) 1476
SspMI CTAG 4 cut(s) 549, 576, 747, 879
StyD4I CCNGG 1 cut(s) 1023
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 5 cut(s) 652, 708, 1291, 1416, 1423
TaqI TCGA 1 cut(s) 1304
TaqII GACCGA 1 cut(s) 932
TasI AATT 9 cut(s) 93, 459, 608, 685, 697, 838, 1139, 1279, 1352
TatI WGTACW 1 cut(s) 1360
TauI GCSGC 2 cut(s) 809, 1230
TfiI GAWTC 3 cut(s) 375, 750, 1031
Tru1I TTAA 4 cut(s) 413, 702, 729, 1383
Tru9I TTAA 4 cut(s) 413, 702, 729, 1383
TscAI CASTG 2 cut(s) 784, 1428
TseFI GTSAC 2 cut(s) 519, 1110
TseI GCWGC 2 cut(s) 482, 1345
Tsp45I GTSAC 2 cut(s) 519, 1110
TspDTI ATGAA 6 cut(s) 273, 489, 660, 832, 987, 1443
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 2 cut(s) 784, 1428
Van91I CCANNNNNTGG 2 cut(s) 740, 1009
VneI GTGCAC 2 cut(s) 208, 310
VpaK11BI GGWCC 1 cut(s) 915
XapI RAATTY 3 cut(s) 608, 1279, 1352
XceI RCATGY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 1452
XmiI GTMKAC 2 cut(s) 1173, 1271
XmnI GAANNNNTTC 3 cut(s) 247, 337, 608
XspI CTAG 4 cut(s) 549, 576, 747, 879
ZrmI AGTACT 1 cut(s) 1362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.