Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

78168932 .. 78176402

Gene Structure 7471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG491100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGTTTGTCACACGGGTGGGTGGTGATGTTTGACTCGACCACGTTCAGAGTCCATCTTCTCAATCCCATCTATAGGGTTAGAATTAAACTCCCATCTCTAGAGTTTGAGCTTCCCATGCGCAGGGCTAGCAAAGTTGTGCTCTCTTCGGATCCGTCTCGCAACAACAAATTTTACGTTGTGGTAAGCTATCAAAAAGTAGAGCCAAGATCACTAGCATTCCACAAGCATGGTGATGACGGAGACAACACTTGGACCGACTTGGACACTACAGATAAAAGATATGGTGAGATTATATTCCACAACAGCCATTTGTTTGCATTATGCTTGGACTCAAACATAATTGAAGTTTGGGACCTTGGGGGAATCTATCCCTTCATAGCCATGGAATTCCAACCTCCAGAAAGGGACGTAGAACATCTTAGTTTTCGGCTTTATTTAGTGGAATCACTGGTAGTGAGAAATTCTAGTGGCCGTGCTGTTTATGAGAAATGTCCGACAGTTGTAGTCTACAACTTGCAAAACAATGGTTTCAAGTCGTATTATATGTACCAAGAGGATAAGCCCATATTGCATTCACCACTTGTTTGGATTGTCCCCAATCCGTATGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

205

Amino Acids

23.95

Weight (kDa)

6.23

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	3 - 153	9.7e-24	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	146, 159
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	3 cut(s)	170, 389, 463
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	75, 123
AgsI	TTSAA	2 cut(s)	347, 535
AleI	CACNNNNGTG	1 cut(s)	16
AluBI	AGCT	2 cut(s)	112, 189
AluI	AGCT	2 cut(s)	112, 189
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	162, 237
AlwI	GGATC	2 cut(s)	146, 159
AoxI	GGCC	1 cut(s)	472
ApoI	RAATTY	3 cut(s)	170, 389, 463
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	255, 355
AsuHPI	GGTGA	4 cut(s)	37, 245, 299, 570
AsuNHI	GCTAGC	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	255, 355
BamHI	GGATCC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	3 cut(s)	63, 77, 103
BceAI	ACGGC	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	162, 237
BfaI	CTAG	4 cut(s)	101, 129, 215, 468
BfmI	CTRYAG	2 cut(s)	73, 270
Bme18I	GGWCC	2 cut(s)	255, 355
BmgT120I	GGNCC	2 cut(s)	255, 355
BmiI	GGNNCC	2 cut(s)	153, 356
BmtI	GCTAGC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	358, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 123
Bse1I	ACTGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	358, 384
BseLI	CCNNNNNNNGG	2 cut(s)	75, 123
BseNI	ACTGG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	3 cut(s)	368, 422, 581
BslI	CCNNNNNNNGG	2 cut(s)	75, 123
BsmAI	GTCTC	2 cut(s)	162, 237
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	3 cut(s)	368, 422, 581
BsmI	GAATGC	2 cut(s)	218, 574
BsnI	GGCC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	151, 209
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	153, 356
BspOI	GCTAGC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	146, 159
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	358, 384
BssMI	GATC	2 cut(s)	151, 209
BssT1I	CCWWGG	2 cut(s)	358, 384
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	154, 212
BstMAI	GTCTC	2 cut(s)	162, 237
BstMBI	GATC	2 cut(s)	151, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 129, 571
BstSFI	CTRYAG	2 cut(s)	73, 270
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	2 cut(s)	230, 588
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	255, 355
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	3 cut(s)	118, 230, 385
CviJI	RGCY	9 cut(s)	112, 128, 189, 205, 309, 383, 433, 474, 565
CviKI_1	RGCY	9 cut(s)	112, 128, 189, 205, 309, 383, 433, 474, 565
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	2 cut(s)	153, 211
DpnII	GATC	2 cut(s)	151, 209
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	358, 384
Eco47I	GGWCC	2 cut(s)	255, 355
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	389
EcoT14I	CCWWGG	2 cut(s)	358, 384
ErhI	CCWWGG	2 cut(s)	358, 384
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	3 cut(s)	121, 233, 388
FaqI	GGGAC	3 cut(s)	368, 422, 581
FatI	CATG	3 cut(s)	117, 229, 384
FblI	GTMKAC	1 cut(s)	510
FspBI	CTAG	4 cut(s)	101, 129, 215, 468
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	474
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	121, 233, 388
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	5 cut(s)	35, 51, 332, 366, 446
HphI	GGTGA	4 cut(s)	37, 245, 299, 570
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	50, 151, 498
Hpy188III	TCNNGA	2 cut(s)	101, 401
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	3 cut(s)	44, 177, 411
HpyCH4V	TGCA	3 cut(s)	320, 520, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 129, 571
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	3 cut(s)	44, 177, 411
Hsp92II	CATG	3 cut(s)	121, 233, 388
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	151, 209
LpnPI	CCDG	3 cut(s)	109, 414, 437
MaeI	CTAG	4 cut(s)	101, 129, 215, 468
MaeII	ACGT	3 cut(s)	44, 177, 411
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	2 cut(s)	153, 211
MboI	GATC	2 cut(s)	151, 209
MboII	GAAGA	2 cut(s)	50, 138
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	84, 170, 342, 389, 463
MlyI	GAGTC	3 cut(s)	29, 60, 326
MmeI	TCCRAC	2 cut(s)	418, 521
MnlI	CCTC	3 cut(s)	408, 550, 604
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	4 cut(s)	16, 228, 234, 383
Mva1269I	GAATGC	2 cut(s)	218, 574
MwoI	GCNNNNNNNGC	3 cut(s)	118, 129, 571
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	151, 209
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	121, 233, 388
NlaIV	GGNNCC	2 cut(s)	153, 356
NmuCI	GTSAC	1 cut(s)	9
NsbI	TGCGCA	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	16
PctI	GAATGC	2 cut(s)	218, 574
PfeI	GAWTC	2 cut(s)	366, 446
PleI	GAGTC	3 cut(s)	29, 59, 326
PpsI	GAGTC	3 cut(s)	29, 59, 326
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	153, 356
PspPI	GGNCC	2 cut(s)	255, 355
PspPPI	RGGWCCY	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	4 cut(s)	16, 228, 234, 383
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	151, 209
Sau96I	GGNCC	2 cut(s)	255, 355
SchI	GAGTC	3 cut(s)	29, 60, 326
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	47, 114, 180, 191, 360, 400, 414, 615
SfcI	CTRYAG	2 cut(s)	73, 270
SinI	GGWCC	2 cut(s)	255, 355
SmiMI	CAYNNNNRTG	4 cut(s)	16, 228, 234, 383
Sse9I	AATT	5 cut(s)	84, 170, 342, 389, 463
SspMI	CTAG	4 cut(s)	101, 129, 215, 468
StyI	CCWWGG	2 cut(s)	358, 384
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	3 cut(s)	47, 180, 414
TaqI	TCGA	1 cut(s)	38
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	5 cut(s)	84, 170, 342, 389, 463
TfiI	GAWTC	2 cut(s)	366, 446
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	367
TspGWI	ACGGA	3 cut(s)	144, 255, 594
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	2 cut(s)	255, 355
XapI	RAATTY	3 cut(s)	170, 389, 463
XbaI	TCTAGA	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	4 cut(s)	101, 129, 215, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.