Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

58592326 .. 58592667

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG324100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAAACCGTGGATTTTCGCCATGGACTAGGGCGTGTGGTTACAGGAGTGAATTTCTTGGAGTCAACAGTAGTGAATATGGTGGACTCACTGGGTGAACTTTATTTGTTTGGGAAGATAATTCGCTGCGGTAAGACCATATCAAAGGAGGATTTCCATATCTACAAGTTAAATTTCACCGCCAAGGAGTGGGAGAAAGTGGAATGTTTGAATGATCAAGCTATATTTTGTGATCATTTTTGTAATCATGCTGACGGAGTGATGTTATTATCAACTCGGAATCTCCCAGAACTTGAAGAAAAAACTCAATATACTTCAGTAAGTGGCAAAAGTATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

113

Amino Acids

12.9

Weight (kDa)

6.41

Isoelectric Point (pI)

15.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	24 - 82	3e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	189
AciI	CCGC	2 cut(s)	129, 180
AcsI	RAATTY	2 cut(s)	52, 172
AcuI	CTGAAG	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	211, 296
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	52, 172
AsuHPI	GGTGA	2 cut(s)	107, 169
BbvI	GCAGC	1 cut(s)	113
BclI	TGATCA	2 cut(s)	214, 232
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	9, 22, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	9, 22, 183
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	214, 232
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	2 cut(s)	129, 180
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	9, 22, 183
BssMI	GATC	2 cut(s)	214, 232
BssT1I	CCWWGG	2 cut(s)	22, 183
Bst4CI	ACNGT	2 cut(s)	10, 70
BstDSI	CCRYGG	2 cut(s)	9, 22
BstKTI	GATC	2 cut(s)	217, 235
BstMBI	GATC	2 cut(s)	214, 232
BstV1I	GCAGC	1 cut(s)	113
BtgI	CCRYGG	2 cut(s)	9, 22
BtsIMutI	CAGTG	1 cut(s)	89
CviAII	CATG	2 cut(s)	23, 248
CviJI	RGCY	1 cut(s)	221
CviKI_1	RGCY	1 cut(s)	221
DpnI	GATC	2 cut(s)	216, 234
DpnII	GATC	2 cut(s)	214, 232
DraIII	CACNNNGTG	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	22, 183
Eco57I	CTGAAG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	22, 183
ErhI	CCWWGG	2 cut(s)	22, 183
FaeI	CATG	2 cut(s)	26, 251
FaiI	YATR	8 cut(s)	24, 80, 140, 159, 224, 249, 312, 335
FatI	CATG	2 cut(s)	22, 247
FbaI	TGATCA	2 cut(s)	214, 232
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	26, 251
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	62, 86, 280
HphI	GGTGA	2 cut(s)	107, 169
Hpy166II	GTNNAC	3 cut(s)	66, 85, 98
Hpy188I	TCNGA	1 cut(s)	279
Hpy8I	GTNNAC	3 cut(s)	66, 85, 98
HpyCH4III	ACNGT	2 cut(s)	10, 70
Hsp92II	CATG	2 cut(s)	26, 251
Ksp22I	TGATCA	2 cut(s)	214, 232
Kzo9I	GATC	2 cut(s)	214, 232
LpnPI	CCDG	3 cut(s)	30, 77, 300
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	216, 234
MboI	GATC	2 cut(s)	214, 232
MboII	GAAGA	2 cut(s)	127, 308
MluCI	AATT	3 cut(s)	52, 120, 172
MlyI	GAGTC	2 cut(s)	71, 80
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	214, 232
NlaIII	CATG	2 cut(s)	26, 251
PfeI	GAWTC	1 cut(s)	280
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	2 cut(s)	70, 80
PpsI	GAGTC	2 cut(s)	70, 80
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	214, 232
SchI	GAGTC	2 cut(s)	71, 80
SetI	ASST	1 cut(s)	223
Sse9I	AATT	3 cut(s)	52, 120, 172
SsiI	CCGC	2 cut(s)	129, 180
SspMI	CTAG	1 cut(s)	29
StyI	CCWWGG	2 cut(s)	22, 183
TaaI	ACNGT	2 cut(s)	10, 70
TasI	AATT	3 cut(s)	52, 120, 172
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	96
Van91I	CCANNNNNTGG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	52, 172
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.