Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

3049926 .. 3051074

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41957

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATCATAAAAAGACTCTCTTTCGTCGGCATGCTTCGTTTCAAAGCTGTCTGTTCTTCTTGGAACTCCATTGCACGATCCTACGCTGCTTCGATTATAAACCAAACTCCATGGCTCACTCTCCCTAGTGATGATGACCACACTCGCCGCTTCTATAGCCTTGAAGAGAAAAAGGTTTACACTGTTAAGAACTCGTTTCAAGACTTTCCTGGTGCGAGCTGGTGTGTGGGTTCATCTCATGGGTGGTTGGTGATTTTGGACGAACCAAACAATATCCCACTTCTGTTTAACCCGATTTCTGAAAATAGATCAATGGAGCTCCCACATATCCCAAGCACTACAAATTCCTTGCTTGGTTCCCCTCCCTTCTACCATGTTGCTAAAGCTGTCCTCTCCTCCGACCCGTCTTGCAACAACAACTTCTCCGTTGCAATAATCTACGGTATCCAACCATCAAGACTTGCATTCTACAACCGTGGAGACGAGGAATGGACCGACTTAAATGGTGAGCATCAAGAATATTGTGACATTATATTCCACAATGACAAATTATTTGCATTGGCCGACAATGGATGTGTTGAAGCTTGGGACTTTAGGAAACCCTCTCCCAATAAGATCATAAATCTTCAACCTGCTTCTGCCAAAGAGTTGGATCTGGATTACACTTCCAATCGCGACAAGTTTTCCACAAATACTTACTTGGTGGAGTCATCGGATGAGATAATGTCTGTGGTGCGGTGTATAGGGAACTTTGTCAATGAGGAGGGCAAAGCTATCCATGAGATAGACGTTCCTGACGAGCCCAACAGTCCTTGTCCCTATAGGACATTGCAATTTTATGTCTTCAAGCTAAATTTTGCGGCGAACAAGTGGGAGGAAGTGGAGTGTTTGCCGAACTGTGCTTTGTTTTTGGGCGGTAGCCAATCAATATCATTGTCCACTAAAGATGTTTCAGGGTGCGAAGAAAACTCAATTTACTTCACGGATGATCGTTGGGATGAGATAGAACTGCTTGGTGATACTGACTCCTATGGCGGCCATGACATGGGAGTGTACAACTTGGAAGACAAAGTCGTGAAGCAATTTTATCCATTTGATAAATGTAGAATTGATCCACCACCTTTTTGGATTGTTCCTAGTCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

382

Amino Acids

43.46

Weight (kDa)

4.73

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	51 - 353	8.6e-56	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	1045
AccII	CGCG	1 cut(s)	675
AciI	CCGC	5 cut(s)	148, 736, 860, 915, 1035
AclWI	GGATC	3 cut(s)	72, 660, 1106
AcoI	YGGCCR	2 cut(s)	561, 1036
AcsI	RAATTY	2 cut(s)	343, 853
AfaI	GTAC	1 cut(s)	1055
AfiI	CCNNNNNNNGG	1 cut(s)	1045
AgsI	TTSAA	6 cut(s)	43, 164, 200, 581, 629, 847
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	7 cut(s)	47, 219, 319, 386, 584, 773, 850
AluI	AGCT	7 cut(s)	47, 219, 319, 386, 584, 773, 850
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	3 cut(s)	72, 660, 1106
AoxI	GGCC	2 cut(s)	561, 1036
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	343, 853
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	3 cut(s)	262, 518, 1028
AvaII	GGWCC	1 cut(s)	492
BanII	GRGCYC	2 cut(s)	321, 804
BbsI	GAAGAC	2 cut(s)	835, 1071
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	460
BciT130I	CCWGG	1 cut(s)	210
BciVI	GTATCC	1 cut(s)	455
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	126, 1137
BfmI	CTRYAG	2 cut(s)	154, 820
BfuAI	ACCTGC	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	4 cut(s)	87, 148, 861, 1036
BlsI	GCNGC	4 cut(s)	88, 149, 862, 1037
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	520
BpiI	GAAGAC	2 cut(s)	835, 1071
BsaJI	CCNNGG	3 cut(s)	110, 475, 1142
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	1045
Bse3DI	GCAATG	2 cut(s)	69, 827
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	110, 475, 1142
BseGI	GGATG	4 cut(s)	578, 721, 991, 1003
BseLI	CCNNNNNNNGG	1 cut(s)	1045
BseMI	GCAATG	2 cut(s)	69, 827
BseRI	GAGGAG	2 cut(s)	385, 776
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	563, 1038
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	602, 801
BslI	CCNNNNNNNGG	1 cut(s)	1045
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	2 cut(s)	602, 801
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	563, 1038
Bsp1286I	GDGCHC	2 cut(s)	321, 804
Bsp1407I	TGTACA	1 cut(s)	1053
Bsp143I	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
Bsp19I	CCATGG	2 cut(s)	110, 1142
Bsp68I	TCGCGA	1 cut(s)	675
BspACI	CCGC	5 cut(s)	148, 736, 860, 915, 1035
BspANI	GGCC	2 cut(s)	563, 1038
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	3 cut(s)	72, 660, 1106
BsrDI	GCAATG	2 cut(s)	69, 827
BsrGI	TGTACA	1 cut(s)	1053
BssECI	CCNNGG	3 cut(s)	110, 475, 1142
BssMI	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
BssT1I	CCWWGG	2 cut(s)	110, 1142
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	5 cut(s)	184, 443, 476, 809, 899
Bst6I	CTCTTC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	1053
BstC8I	GCNNGC	2 cut(s)	32, 217
BstDSI	CCRYGG	3 cut(s)	110, 475, 1142
BstF5I	GGATG	4 cut(s)	578, 721, 991, 1003
BstFNI	CGCG	1 cut(s)	675
BstKTI	GATC	7 cut(s)	6, 80, 311, 618, 655, 991, 1114
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	2 cut(s)	154, 820
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	2 cut(s)	835, 1071
BstX2I	RGATCY	1 cut(s)	652
BstXI	CCANNNNNNTGG	2 cut(s)	649, 1125
BstYI	RGATCY	1 cut(s)	652
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	563, 1038
BtgI	CCRYGG	3 cut(s)	110, 475, 1142
BtsCI	GGATG	4 cut(s)	578, 721, 991, 1003
BtsIMutI	CAGTG	1 cut(s)	180
BtuMI	TCGCGA	1 cut(s)	675
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	32, 217
Cfr13I	GGNCC	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	1054
CviAII	CATG	8 cut(s)	31, 111, 239, 374, 779, 1040, 1045, 1143
CviQI	GTAC	1 cut(s)	1054
DpnI	GATC	7 cut(s)	5, 79, 310, 617, 654, 990, 1113
DpnII	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
EaeI	YGGCCR	2 cut(s)	561, 1036
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	110, 1142
Eco24I	GRGCYC	2 cut(s)	321, 804
Eco47I	GGWCC	1 cut(s)	492
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	110, 1142
EcoT38I	GRGCYC	2 cut(s)	321, 804
ErhI	CCWWGG	2 cut(s)	110, 1142
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	8 cut(s)	34, 114, 242, 377, 782, 1043, 1048, 1146
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	2 cut(s)	602, 801
FatI	CATG	8 cut(s)	30, 110, 238, 373, 778, 1039, 1044, 1142
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	87, 148, 861, 1036
FokI	GGATG	4 cut(s)	585, 728, 998, 1010
FriOI	GRGCYC	2 cut(s)	321, 804
Fsp4HI	GCNGC	4 cut(s)	87, 148, 861, 1036
FspBI	CTAG	2 cut(s)	126, 1137
GluI	GCNGC	4 cut(s)	87, 148, 861, 1036
HaeIII	GGCC	2 cut(s)	563, 1038
Hin1II	CATG	8 cut(s)	34, 114, 242, 377, 782, 1043, 1048, 1146
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	15, 707, 1025
HphI	GGTGA	3 cut(s)	262, 518, 1028
Hpy166II	GTNNAC	3 cut(s)	178, 939, 1054
Hpy188I	TCNGA	3 cut(s)	301, 400, 715
Hpy188III	TCNNGA	7 cut(s)	200, 456, 515, 656, 674, 794, 1075
Hpy8I	GTNNAC	3 cut(s)	178, 939, 1054
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	5 cut(s)	184, 443, 476, 809, 899
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	6 cut(s)	74, 411, 431, 464, 557, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	8 cut(s)	34, 114, 242, 377, 782, 1043, 1048, 1146
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
LmnI	GCTCC	2 cut(s)	316, 324
LpnPI	CCDG	7 cut(s)	195, 205, 222, 641, 645, 807, 939
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	2 cut(s)	126, 1137
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	7 cut(s)	5, 79, 310, 617, 654, 990, 1113
MboI	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
MboII	GAAGA	6 cut(s)	48, 176, 617, 835, 974, 1076
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	321, 804
MluCI	AATT	7 cut(s)	343, 548, 833, 853, 972, 1082, 1107
MlyI	GAGTC	3 cut(s)	9, 716, 1019
MmeI	TCCRAC	3 cut(s)	423, 472, 630
MnlI	CCTC	8 cut(s)	372, 401, 406, 478, 613, 754, 757, 868
MseI	TTAA	3 cut(s)	186, 288, 500
MslI	CAYNNNNRTG	1 cut(s)	1049
MspR9I	CCNGG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	156
NcoI	CCATGG	2 cut(s)	110, 1142
NdeII	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
NlaIII	CATG	8 cut(s)	34, 114, 242, 377, 782, 1043, 1048, 1146
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	524
NruI	TCGCGA	1 cut(s)	675
NspI	RCATGY	1 cut(s)	34
PaeI	GCATGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PctI	GAATGC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	1070
PflMI	CCANNNNNTGG	1 cut(s)	1045
PkrI	GCNGC	4 cut(s)	88, 149, 862, 1037
PleI	GAGTC	3 cut(s)	9, 715, 1019
PpsI	GAGTC	3 cut(s)	9, 715, 1019
PsiI	TTATAA	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	652
PsyI	GACNNNGTC	1 cut(s)	1070
RruI	TCGCGA	1 cut(s)	675
RsaI	GTAC	1 cut(s)	1055
RsaNI	GTAC	1 cut(s)	1054
RseI	CAYNNNNRTG	1 cut(s)	1049
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	186, 288, 500
SatI	GCNGC	4 cut(s)	87, 148, 861, 1036
Sau3AI	GATC	7 cut(s)	3, 77, 308, 615, 652, 988, 1111
Sau96I	GGNCC	1 cut(s)	492
SchI	GAGTC	3 cut(s)	9, 716, 1019
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	321, 804
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	2 cut(s)	154, 820
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	1049
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	7 cut(s)	343, 548, 833, 853, 972, 1082, 1107
SsiI	CCGC	5 cut(s)	148, 736, 860, 915, 1035
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	2 cut(s)	126, 1137
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	2 cut(s)	110, 1142
TaaI	ACNGT	5 cut(s)	184, 443, 476, 809, 899
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	1 cut(s)	92
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	7 cut(s)	343, 548, 833, 853, 972, 1082, 1107
TatI	WGTACW	1 cut(s)	1053
TauI	GCSGC	3 cut(s)	150, 863, 1038
Tru1I	TTAA	3 cut(s)	186, 288, 500
Tru9I	TTAA	3 cut(s)	186, 288, 500
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	415, 998
TspRI	CASTG	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	1070
Van91I	CCANNNNNTGG	1 cut(s)	1045
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	2 cut(s)	343, 853
XceI	RCATGY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1122
XspI	CTAG	2 cut(s)	126, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.