Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

55063630 .. 55064906

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAAGCATTTCACCGTCCTCCCAGCCGATCTCCTAGAGCTTATCTTGAAAAGCCTTACCGCTGTCGACATTATCGCTTTAAAGCTGTTTGTACTTCATGGATGTACGCCACAAAATACTATCCGCTGCCTCAACCTCCGTGGCTCATGCTACCTAGTAATCAACAAAACGATGTCAACTCTCGCCGCTTCTTTGATGTTGTAGACAAAGCTCGTACAATTTACACAATGACGAACCTTTTTCGAGGCTTCTCCGATTCGTGGTGTATAGGTTCATCACGTGGATGGCTGGTGACTGTGGACAAAAAAACAGCTGTGCATCTTTTCAATCCACTTCCAGGGGGAAGAAGCATTGAACTTCCGGAGATCGGAAACATTGCTGGAATTCCTAGGTCTTTCAACATTGACGTTCATATCTTGCACAGATTATGCAGAATTCATACTTGTAAGGCTGTTTTTTCTTCCAGCCCATCTCGCAACAAAAACTTTATGGCTGCCATAATCTACAATAAACGAAACTCAAGACTTGCGTACTATAAAAAGGGCTACAGGACGTGGATCGAGTTATATAATGAATTAATGATCATAGAGAGTCCTATAGTGATGTTATATTCCACAATGATGACCAACTCTTTGCCCTTAAAATATTCTAGTTATTTGGTCGAGTCTTTGGATGAGATTTTATTAGTTGTGCGGATTGTGGTGATACATGGTCTCTATAAAACCCATAGCTTCAGGGTTTTCAAGGTGAACGTGAAGAACTCGCAATTGGAGAAGGTGGAATGTTTGCATGATCGGGTTTTATTTTTGGGCGGAAATCAATCACTGTCATTATCCACTCGGGATTTTCCGGCACTTCAAGATAATTCTGTTTACTTCACGGATGATCGCTGGTCTATGATGAATTTTAATTACTACTATCTTGGTGAGGGTGAGAAGGATTCTCATAATAATTATGGTGGCCATGATGTTGGAGTATACAGTTTAGAAGATGGAGTTGTGAAGCTATTTGATCAAATTGATAATCGGCAGACCATTTATCCTCCACCATTTTGGATTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

355

Amino Acids

41.47

Weight (kDa)

9.41

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	72 - 328	1e-40	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	67, 204, 978
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	5 cut(s)	61, 125, 187, 694, 813
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	961
AcsI	RAATTY	3 cut(s)	384, 435, 904
AcuI	CTGAAG	1 cut(s)	718
AcvI	CACGTG	1 cut(s)	281
AfaI	GTAC	4 cut(s)	94, 107, 217, 533
AfiI	CCNNNNNNNGG	3 cut(s)	261, 338, 368
AgsI	TTSAA	6 cut(s)	50, 328, 356, 400, 745, 860
AjiI	CACGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	6 cut(s)	41, 86, 212, 314, 732, 1006
AluI	AGCT	6 cut(s)	41, 86, 212, 314, 732, 1006
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	840
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	1 cut(s)	961
ApeKI	GCWGC	2 cut(s)	127, 494
ApoI	RAATTY	3 cut(s)	384, 435, 904
ArsI	GACNNNNNNTTYG	2 cut(s)	616, 648
AseI	ATTAAT	1 cut(s)	578
AspA2I	CCTAGG	1 cut(s)	389
AsuHPI	GGTGA	6 cut(s)	5, 304, 715, 760, 938, 944
AvaI	CYCGRG	1 cut(s)	840
AvrII	CCTAGG	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	963
BbrPI	CACGTG	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	114, 481
BccI	CCATC	3 cut(s)	279, 478, 986
BciT130I	CCWGG	1 cut(s)	339
BclI	TGATCA	2 cut(s)	582, 1012
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	4 cut(s)	36, 156, 390, 651
BfmI	CTRYAG	2 cut(s)	547, 597
BisI	GCNGC	3 cut(s)	128, 187, 495
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	3 cut(s)	129, 188, 496
Bme1390I	CCNGG	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	840
BmgBI	CACGTC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	505
BsaAI	YACGTR	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	3 cut(s)	140, 338, 389
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 338, 368
Bse3DI	GCAATG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	140, 338, 389
BseGI	GGATG	4 cut(s)	108, 290, 679, 889
BseLI	CCNNNNNNNGG	3 cut(s)	261, 338, 368
BseMI	GCAATG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	114, 481
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	963
BsiHKCI	CYCGRG	1 cut(s)	840
BsiSI	CCGG	2 cut(s)	362, 851
BslI	CCNNNNNNNGG	3 cut(s)	261, 338, 368
BsmAI	GTCTC	1 cut(s)	719
BsnI	GGCC	1 cut(s)	963
Bso31I	GGTCTC	1 cut(s)	719
BsoBI	CYCGRG	1 cut(s)	840
Bsp13I	TCCGGA	1 cut(s)	361
Bsp143I	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
BspACI	CCGC	5 cut(s)	61, 125, 187, 694, 813
BspANI	GGCC	1 cut(s)	963
BspEI	TCCGGA	1 cut(s)	361
BspPI	GGATC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	140, 338, 389
BssMI	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
BssNAI	GTATAC	1 cut(s)	979
BssT1I	CCWWGG	1 cut(s)	389
Bst1107I	GTATAC	1 cut(s)	979
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	17, 298, 828, 983
BstBAI	YACGTR	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	4 cut(s)	108, 290, 679, 889
BstKTI	GATC	7 cut(s)	32, 369, 561, 585, 796, 889, 1015
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	2 cut(s)	547, 597
BstV1I	GCAGC	2 cut(s)	114, 481
BstXI	CCANNNNNNTGG	2 cut(s)	971, 1053
BstZ17I	GTATAC	1 cut(s)	979
BsuRI	GGCC	1 cut(s)	963
BtgI	CCRYGG	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	555
BtsCI	GGATG	4 cut(s)	108, 290, 679, 889
BtsIMutI	CAGTG	1 cut(s)	824
Csp6I	GTAC	4 cut(s)	93, 106, 216, 532
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviAII	CATG	5 cut(s)	99, 148, 710, 791, 965
CviQI	GTAC	4 cut(s)	93, 106, 216, 532
DpnI	GATC	7 cut(s)	31, 368, 560, 584, 795, 888, 1014
DpnII	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
DraI	TTTAAA	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	961
EciI	GGCGGA	1 cut(s)	828
Eco130I	CCWWGG	1 cut(s)	389
Eco31I	GGTCTC	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	718
Eco72I	CACGTG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	840
EcoRI	GAATTC	2 cut(s)	384, 435
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	5 cut(s)	102, 151, 713, 794, 968
FatI	CATG	5 cut(s)	98, 147, 709, 790, 964
FbaI	TGATCA	2 cut(s)	582, 1012
FblI	GTMKAC	3 cut(s)	67, 204, 978
Fnu4HI	GCNGC	3 cut(s)	128, 187, 495
FokI	GGATG	4 cut(s)	115, 297, 686, 896
Fsp4HI	GCNGC	3 cut(s)	128, 187, 495
FspBI	CTAG	4 cut(s)	36, 156, 390, 651
GluI	GCNGC	3 cut(s)	128, 187, 495
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	963
HapII	CCGG	2 cut(s)	362, 851
Hin1II	CATG	5 cut(s)	102, 151, 713, 794, 968
HincII	GTYRAC	2 cut(s)	68, 178
HindII	GTYRAC	2 cut(s)	68, 178
HinfI	GANTC	5 cut(s)	257, 592, 665, 941, 1057
HpaII	CCGG	2 cut(s)	362, 851
HphI	GGTGA	6 cut(s)	5, 304, 715, 760, 938, 944
Hpy166II	GTNNAC	7 cut(s)	68, 178, 205, 301, 751, 874, 979
Hpy188I	TCNGA	2 cut(s)	256, 371
Hpy188III	TCNNGA	5 cut(s)	47, 362, 522, 842, 860
Hpy8I	GTNNAC	7 cut(s)	68, 178, 205, 301, 751, 874, 979
HpyAV	CCTTC	2 cut(s)	769, 931
HpyCH4III	ACNGT	4 cut(s)	17, 298, 828, 983
HpyCH4IV	ACGT	4 cut(s)	280, 408, 554, 753
HpyCH4V	TGCA	4 cut(s)	319, 421, 432, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpySE526I	ACGT	4 cut(s)	280, 408, 554, 753
Hsp92II	CATG	5 cut(s)	102, 151, 713, 794, 968
Kpn2I	TCCGGA	1 cut(s)	361
Ksp22I	TGATCA	2 cut(s)	582, 1012
Kzo9I	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
Lsp1109I	GCAGC	2 cut(s)	114, 481
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	4 cut(s)	36, 156, 390, 651
MaeII	ACGT	4 cut(s)	280, 408, 554, 753
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	7 cut(s)	31, 368, 560, 584, 795, 888, 1014
MboI	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
MboII	GAAGA	5 cut(s)	357, 453, 769, 1001, 1052
MfeI	CAATTG	1 cut(s)	767
MlsI	TGGCCA	1 cut(s)	963
MluNI	TGGCCA	1 cut(s)	963
MlyI	GAGTC	2 cut(s)	601, 674
MmeI	TCCRAC	1 cut(s)	952
MnlI	CCTC	6 cut(s)	30, 141, 147, 239, 922, 1053
Mox20I	TGGCCA	1 cut(s)	963
MroI	TCCGGA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	963
MseI	TTAA	4 cut(s)	81, 578, 641, 909
MslI	CAYNNNNRTG	2 cut(s)	283, 620
Msp20I	TGGCCA	1 cut(s)	963
MspA1I	CMGCKG	3 cut(s)	63, 127, 314
MspI	CCGG	2 cut(s)	362, 851
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	474
NdeII	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
NlaIII	CATG	5 cut(s)	102, 151, 713, 794, 968
NmuCI	GTSAC	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	257, 941, 1057
PkrI	GCNGC	3 cut(s)	129, 188, 496
PleI	GAGTC	2 cut(s)	600, 673
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	2 cut(s)	600, 673
Ppu21I	YACGTR	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	4 cut(s)	94, 107, 217, 533
RsaNI	GTAC	4 cut(s)	93, 106, 216, 532
RseI	CAYNNNNRTG	2 cut(s)	283, 620
SalI	GTCGAC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	81, 578, 641, 909
SatI	GCNGC	3 cut(s)	128, 187, 495
Sau3AI	GATC	7 cut(s)	29, 366, 558, 582, 793, 886, 1012
SchI	GAGTC	2 cut(s)	601, 674
ScrFI	CCNGG	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	2 cut(s)	547, 597
SmiMI	CAYNNNNRTG	2 cut(s)	283, 620
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SsiI	CCGC	5 cut(s)	61, 125, 187, 694, 813
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	4 cut(s)	36, 156, 390, 651
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	389
TaaI	ACNGT	4 cut(s)	17, 298, 828, 983
TaiI	ACGT	4 cut(s)	283, 411, 557, 756
TaqI	TCGA	4 cut(s)	67, 244, 561, 663
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	3 cut(s)	257, 941, 1057
Tru1I	TTAA	4 cut(s)	81, 578, 641, 909
Tru9I	TTAA	4 cut(s)	81, 578, 641, 909
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	127, 494
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	7 cut(s)	17, 87, 264, 401, 428, 588, 917
TspGWI	ACGGA	2 cut(s)	129, 896
TspRI	CASTG	1 cut(s)	831
VspI	ATTAAT	1 cut(s)	578
XapI	RAATTY	3 cut(s)	384, 435, 904
XmaJI	CCTAGG	1 cut(s)	389
XmiI	GTMKAC	3 cut(s)	67, 204, 978
XspI	CTAG	4 cut(s)	36, 156, 390, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.