FvH4_4g26320

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27756600 .. 27757974
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26320.t1

Sequence Viewer

Length: 1227 bp
ATGGTTGATAAGGCATTCCACCGACGCACAACAAGGACGGAAAAAACAACCAATCAACCAAACTGGTCCGAGCTACCACCTGAACTCCTAGAGCTCATCTTGAAAAGCCTTACTGCAGTCGACATAATTCACATCAAAGCTGTTTGCAGTTCATGGATGCACGCCGTAAAACACTATCCCCTGCCTCAATCTCCGTGGCTCATGCTCCCCAGTAATGATCAAAACAACGTCACCTCTCGCTGCTTCTTTGATGTTGCAGGCAAACCTGGTACGTTTTACACGATGACCAACCTTTTCCGAGGCTTCTCCGATTCATGGTGTATAGGTTCGTCACATGGATGGTTGGTCATTCTGGACCCAAACCCAAAAGCAGTCGTGCATCTTCTTCATCCACTTTCAGGAGGACGCCTTCGACTCCCGGAGATCGGAACCATTATTGCCGAGATTCTTACCTCCTTCAACAATGACGTTCAAATCAGACGTCATATTAGTAAGGTTGTTCTCTCTTCCGACCCAGCTCGCAACAATAATTTCACGGCGGCTGCCTTGTTTGAGGAGAAACAACGCTCAGGGCTCGCGTACTGTAAGAAGGGCTACATAACGTGGATCGAATTTTATAAGCCAAGTGATGAGTACTCCTATAGTGACGTGATATTCCACAATGATGACCAGCTCTTTGAGCTTCGACATCGGAACGGATGGTTGATTGATGTTTGGAACTTGAAAGAAAATCCCATTGTCATGAAAACCATTAGGTTACAAGACTGCCGGAGATTTACGCTGGAAGAAGAATTCGAACGCTTTCTCTGTGGAAGATATGAGACTTATTTGGTTGAGTGTTTGGGTGAGATATTGTTAGTAGAGCGGGCTATATCACTCAGACGTTCCCATCCCAATAGAACCGTTAGCTTTGAGGTTTTCAAGGTGAACCTCACGAACTCGCAATTGGAGAAGGTGGAGTGTTTAGATGATCGGGTTTTATTTTTCGACGTAAATCAATCTGTGTCGTTATCAACTCGGGATTTTTCGGCACTTGAACGGAATTCCATTTACTTCACAGATGATCGCTGGTGTATGATGAGAAGGGTTGGTAAGGGTGAGGGTAGTACTGCTTATGGTGGCAATGATATTGGAGTCTATAGTGTAGAATATGGAGTTGTGAAGCCATTTGATGAAATTAATAATGAGCGGATCATTGATCCTCTACCCTTTTGGATTCTTCCTTGA

Protein Analysis

409

Amino Acids

47.26

Weight (kDa)

6.28

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 60 1.9e-07 F-box domain
F-box-like PF12937 22 - 56 1e-05 F-box-like
Beta-prop_KIB1-4 PF03478 99 - 381 1.6e-49 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AatII GACGTC 1 cut(s) 484
AccBSI CCGCTC 2 cut(s) 865, 1189
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 578
AciI CCGC 3 cut(s) 539, 865, 1189
AclWI GGATC 3 cut(s) 614, 1193, 1199
AcsI RAATTY 3 cut(s) 611, 791, 1042
AcyI GRCGYC 2 cut(s) 406, 481
AfaI GTAC 4 cut(s) 271, 581, 635, 1108
AfiI CCNNNNNNNGG 3 cut(s) 315, 398, 425
AgsI TTSAA 6 cut(s) 103, 460, 473, 724, 922, 1037
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
AluBI AGCT 7 cut(s) 73, 94, 140, 518, 673, 682, 909
AluI AGCT 7 cut(s) 73, 94, 140, 518, 673, 682, 909
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 815
AlwI GGATC 3 cut(s) 614, 1193, 1199
Ama87I CYCGRG 1 cut(s) 1017
ApeKI GCWGC 2 cut(s) 240, 542
ApoI RAATTY 3 cut(s) 611, 791, 1042
ArsI GACNNNNNNTTYG 4 cut(s) 466, 498, 659, 691
AseI ATTAAT 1 cut(s) 1179
Asp700I GAANNNNTTC 1 cut(s) 801
AspS9I GGNCC 2 cut(s) 66, 355
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 4 cut(s) 223, 857, 937, 1109
AsuII TTCGAA 1 cut(s) 795
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 2 cut(s) 66, 355
BanII GRGCYC 2 cut(s) 96, 576
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 227, 529
BccI CCATC 3 cut(s) 333, 693, 897
BceAI ACGGC 2 cut(s) 149, 552
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 815
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 3 cut(s) 114, 640, 1138
BisI GCNGC 3 cut(s) 241, 540, 543
BlsI GCNGC 3 cut(s) 242, 541, 544
BmcAI AGTACT 2 cut(s) 635, 1108
Bme1390I CCNGG 2 cut(s) 267, 419
Bme18I GGWCC 2 cut(s) 66, 355
BmeT110I CYCGRG 1 cut(s) 1017
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 66, 355
BmiI GGNNCC 2 cut(s) 357, 430
BmrFI CCNGG 2 cut(s) 267, 419
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 147, 388
BmuI ACTGGG 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 568
Bpu14I TTCGAA 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 419
BsaHI GRCGYC 2 cut(s) 406, 481
BsaJI CCNNGG 2 cut(s) 194, 298
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 398, 425
Bse1I ACTGG 2 cut(s) 68, 210
Bse3DI GCAATG 1 cut(s) 1129
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 194, 298
BseGI GGATG 5 cut(s) 162, 344, 388, 704, 889
BseLI CCNNNNNNNGG 3 cut(s) 315, 398, 425
BseMI GCAATG 1 cut(s) 1129
BseMII CTCAG 2 cut(s) 582, 892
BseNI ACTGG 2 cut(s) 68, 210
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 2 cut(s) 227, 529
BseYI CCCAGC 1 cut(s) 514
Bsh1236I CGCG 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 2 cut(s) 419, 769
BslI CCNNNNNNNGG 3 cut(s) 315, 398, 425
BsmAI GTCTC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 1017
Bsp119I TTCGAA 1 cut(s) 795
Bsp1286I GDGCHC 2 cut(s) 96, 576
Bsp143I GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
BspACI CCGC 3 cut(s) 539, 865, 1189
BspCNI CTCAG 2 cut(s) 581, 891
BspFNI CGCG 1 cut(s) 578
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 2 cut(s) 357, 430
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 3 cut(s) 614, 1193, 1199
BspT104I TTCGAA 1 cut(s) 795
BsrBI CCGCTC 2 cut(s) 865, 1189
BsrDI GCAATG 1 cut(s) 1129
BsrI ACTGG 2 cut(s) 68, 210
BssECI CCNNGG 2 cut(s) 194, 298
BssMI GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
BssNI GRCGYC 2 cut(s) 406, 481
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 584, 904
Bst6I CTCTTC 1 cut(s) 511
BstACI GRCGYC 2 cut(s) 406, 481
BstBI TTCGAA 1 cut(s) 795
BstC8I GCNNGC 5 cut(s) 162, 259, 520, 576, 867
BstDEI CTNAG 2 cut(s) 568, 878
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 5 cut(s) 162, 344, 388, 704, 889
BstFNI CGCG 1 cut(s) 578
BstKTI GATC 7 cut(s) 220, 426, 609, 973, 1066, 1194, 1201
BstMAI GTCTC 1 cut(s) 815
BstMBI GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
BstMWI GCNNNNNNNGC 1 cut(s) 679
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 265, 417
BstSFI CTRYAG 3 cut(s) 114, 640, 1138
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 2 cut(s) 227, 529
BtgI CCRYGG 1 cut(s) 194
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 5 cut(s) 162, 344, 388, 704, 889
Cac8I GCNNGC 5 cut(s) 162, 259, 520, 576, 867
CciI TCATGA 1 cut(s) 741
Cfr13I GGNCC 2 cut(s) 66, 355
CseI GACGC 2 cut(s) 33, 414
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 4 cut(s) 270, 580, 634, 1107
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 5 cut(s) 153, 202, 315, 335, 742
CviQI GTAC 4 cut(s) 270, 580, 634, 1107
DdeI CTNAG 2 cut(s) 568, 878
DpnI GATC 7 cut(s) 219, 425, 608, 972, 1065, 1193, 1200
DpnII GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
Eam1104I CTCTTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 511
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 96, 576
Eco47I GGWCC 2 cut(s) 66, 355
Eco53kI GAGCTC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 1017
EcoICRI GAGCTC 1 cut(s) 94
EcoRI GAATTC 2 cut(s) 791, 1042
EcoRII CCWGG 1 cut(s) 265
EcoT38I GRGCYC 2 cut(s) 96, 576
FaeI CATG 5 cut(s) 156, 205, 318, 338, 745
FatI CATG 5 cut(s) 152, 201, 314, 334, 741
FauI CCCGC 1 cut(s) 858
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 241, 540, 543
FokI GGATG 5 cut(s) 169, 351, 375, 711, 876
FriOI GRGCYC 2 cut(s) 96, 576
Fsp4HI GCNGC 3 cut(s) 241, 540, 543
FspBI CTAG 1 cut(s) 89
GluI GCNGC 3 cut(s) 241, 540, 543
GsaI CCCAGC 1 cut(s) 518
HapII CCGG 2 cut(s) 419, 769
HgaI GACGC 2 cut(s) 33, 414
Hin1I GRCGYC 2 cut(s) 406, 481
Hin1II CATG 5 cut(s) 156, 205, 318, 338, 745
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 5 cut(s) 311, 414, 445, 1134, 1216
HpaII CCGG 2 cut(s) 419, 769
HphI GGTGA 4 cut(s) 223, 857, 937, 1109
Hpy166II GTNNAC 2 cut(s) 121, 928
Hpy188I TCNGA 8 cut(s) 70, 299, 310, 428, 479, 511, 693, 881
Hpy188III TCNNGA 6 cut(s) 100, 353, 399, 742, 934, 1019
Hpy8I GTNNAC 2 cut(s) 121, 928
Hpy99I CGWCG 2 cut(s) 27, 992
HpyAV CCTTC 5 cut(s) 419, 466, 583, 946, 1077
HpyCH4III ACNGT 2 cut(s) 584, 904
HpyCH4IV ACGT 8 cut(s) 228, 272, 468, 481, 602, 648, 883, 990
HpyCH4V TGCA 5 cut(s) 116, 147, 160, 257, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 679
HpyF3I CTNAG 2 cut(s) 568, 878
HpySE526I ACGT 8 cut(s) 228, 272, 468, 481, 602, 648, 883, 990
Hsp92I GRCGYC 2 cut(s) 406, 481
Hsp92II CATG 5 cut(s) 156, 205, 318, 338, 745
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 227, 529
LweI GCATC 2 cut(s) 147, 388
MabI ACCWGGT 1 cut(s) 265
MaeI CTAG 1 cut(s) 89
MaeII ACGT 8 cut(s) 228, 272, 468, 481, 602, 648, 883, 990
MaeIII GTNAC 4 cut(s) 229, 330, 644, 756
MalI GATC 7 cut(s) 219, 425, 608, 972, 1065, 1193, 1200
MbiI CCGCTC 2 cut(s) 865, 1189
MboI GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
MboII GAAGA 7 cut(s) 374, 377, 498, 797, 800, 825, 1211
MfeI CAATTG 1 cut(s) 944
MhlI GDGCHC 2 cut(s) 96, 576
MluCI AATT 7 cut(s) 126, 529, 611, 791, 944, 1042, 1176
MlyI GAGTC 2 cut(s) 408, 1143
MmeI TCCRAC 1 cut(s) 534
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 1 cut(s) 1179
MslI CAYNNNNRTG 3 cut(s) 337, 663, 740
MspI CCGG 2 cut(s) 419, 769
MspR9I CCNGG 2 cut(s) 267, 419
MunI CAATTG 1 cut(s) 944
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 679
NciI CCSGG 1 cut(s) 419
NdeII GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
NlaIII CATG 5 cut(s) 156, 205, 318, 338, 745
NlaIV GGNNCC 2 cut(s) 357, 430
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 3 cut(s) 229, 330, 644
NspV TTCGAA 1 cut(s) 795
PagI TCATGA 1 cut(s) 741
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 3 cut(s) 311, 445, 1216
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 3 cut(s) 242, 541, 544
PleI GAGTC 2 cut(s) 408, 1142
PpsI GAGTC 2 cut(s) 408, 1142
PshBI ATTAAT 1 cut(s) 1179
PsiI TTATAA 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 265
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 357, 430
PspPI GGNCC 2 cut(s) 66, 355
PstI CTGCAG 1 cut(s) 118
RsaI GTAC 4 cut(s) 271, 581, 635, 1108
RsaNI GTAC 4 cut(s) 270, 580, 634, 1107
RseI CAYNNNNRTG 3 cut(s) 337, 663, 740
SacI GAGCTC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 1179
SatI GCNGC 3 cut(s) 241, 540, 543
Sau3AI GATC 7 cut(s) 217, 423, 606, 970, 1063, 1191, 1198
Sau96I GGNCC 2 cut(s) 66, 355
ScaI AGTACT 2 cut(s) 635, 1108
SchI GAGTC 2 cut(s) 408, 1143
ScrFI CCNGG 2 cut(s) 267, 419
SduI GDGCHC 2 cut(s) 96, 576
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 2 cut(s) 147, 388
SfcI CTRYAG 3 cut(s) 114, 640, 1138
SfuI TTCGAA 1 cut(s) 795
SinI GGWCC 2 cut(s) 66, 355
SmiMI CAYNNNNRTG 3 cut(s) 337, 663, 740
Sse9I AATT 7 cut(s) 126, 529, 611, 791, 944, 1042, 1176
SsiI CCGC 3 cut(s) 539, 865, 1189
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 265, 417
TaaI ACNGT 2 cut(s) 584, 904
TaiI ACGT 8 cut(s) 231, 275, 471, 484, 605, 651, 886, 993
TaqI TCGA 6 cut(s) 120, 412, 609, 685, 795, 987
TasI AATT 7 cut(s) 126, 529, 611, 791, 944, 1042, 1176
TatI WGTACW 2 cut(s) 633, 1106
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 3 cut(s) 311, 445, 1216
Tru1I TTAA 1 cut(s) 1179
Tru9I TTAA 1 cut(s) 1179
TseFI GTSAC 3 cut(s) 229, 330, 644
TseI GCWGC 2 cut(s) 240, 542
Tsp45I GTSAC 3 cut(s) 229, 330, 644
TspDTI ATGAA 5 cut(s) 141, 303, 377, 758, 1188
TspGWI ACGGA 4 cut(s) 53, 183, 711, 1054
VpaK11BI GGWCC 2 cut(s) 66, 355
VspI ATTAAT 1 cut(s) 1179
XapI RAATTY 3 cut(s) 611, 791, 1042
XmiI GTMKAC 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 482
ZrmI AGTACT 2 cut(s) 635, 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.