Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002149.1

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

5954 .. 8837

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002149.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggctaaggccgccaatgaaatagctatggatgataaaatcctcaatggttgcacgagtaactggtctgatctcccattcgatttattagagttgatcttgaaaagacttgcactcgtcgacctcacatgctttaagcttgtttctccatcttggtatgccgctgcaaaatcttatatctctgccccattttatagacccttgcttcctcaaactgtatggctcatgctccctggagaacccaaaaatataaatgtcggccgcttctttagcctcgcagagaaaaaggtttacatcttcaaaaacctgtttcgaggcttttcttattccgaaacatgtctgagtttgtcacacgggtggctggtgatgtttgactcgaccacgttcagagtccatcttctcaatcccatctatagggttagaattaaactcccatctctagagtttgagcttcccatgcgcagggctagcaaagttgtgctctcttcggatccgtctcgcaacaacaacttttacgttgtggtaagctatcaaaaagtagagccaagatcactagcattccacaagcatggtgatgacggagacaacacttggaccgacttggacactacagataaaagatatggtgagattatattccacaacagccatttgtttgcattatgcttggactcaaacataattgaagtttgggaccttgggggaatctatcccttcatagccatggaattccaacctccagagagggacgtagaacatcttagttttcggctttatttagtggaatcactgggatctgtgtactcgggtgataattggcaaaggagatttgagggagagactgtttcacttggattgcatgtacagaggaccgacacaagcaccatcaagtccacaaggtcatgttgccctgacattgagttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

308

Amino Acids

35.45

Weight (kDa)

6.25

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	3 cut(s)	12, 162, 262
AclWI	GGATC	3 cut(s)	485, 498, 802
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	728
AfaI	GTAC	2 cut(s)	803, 864
AfiI	CCNNNNNNNGG	2 cut(s)	414, 462
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	103, 301, 686
AjnI	CCWGG	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	355
AluBI	AGCT	4 cut(s)	26, 139, 451, 528
AluI	AGCT	4 cut(s)	26, 139, 451, 528
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	3 cut(s)	501, 576, 833
AlwI	GGATC	3 cut(s)	485, 498, 802
Ama87I	CYCGRG	1 cut(s)	805
AoxI	GGCC	2 cut(s)	9, 259
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	3 cut(s)	594, 694, 870
AsuHPI	GGTGA	4 cut(s)	376, 584, 638, 821
AsuNHI	GCTAGC	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	805
AvaII	GGWCC	3 cut(s)	594, 694, 870
BamHI	GGATCC	1 cut(s)	490
BauI	CACGAG	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	5 cut(s)	157, 402, 416, 442, 893
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	501, 576, 833
BfaI	CTAG	3 cut(s)	440, 468, 554
BfmI	CTRYAG	2 cut(s)	412, 609
BisI	GCNGC	4 cut(s)	12, 162, 165, 262
BlsI	GCNGC	4 cut(s)	13, 163, 166, 263
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	3 cut(s)	594, 694, 870
BmeT110I	CYCGRG	1 cut(s)	805
BmgT120I	GGNCC	3 cut(s)	594, 694, 870
BmiI	GGNNCC	2 cut(s)	492, 695
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	800
BmtI	GCTAGC	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	2 cut(s)	255, 723
Bpu10I	CCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	232, 697, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 462
Bse1I	ACTGG	2 cut(s)	68, 795
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	232, 697, 723
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	414, 462
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	68, 795
BseX3I	CGGCCG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	11, 261
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	805
BslFI	GGGAC	2 cut(s)	707, 761
BslI	CCNNNNNNNGG	2 cut(s)	414, 462
BsmAI	GTCTC	3 cut(s)	501, 576, 833
BsmBI	CGTCTC	1 cut(s)	501
BsmFI	GGGAC	2 cut(s)	707, 761
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	11, 261
BsoBI	CYCGRG	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp1407I	TGTACA	1 cut(s)	862
Bsp143I	GATC	5 cut(s)	70, 96, 490, 548, 794
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	3 cut(s)	12, 162, 262
BspANI	GGCC	2 cut(s)	11, 261
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	492, 695
BspOI	GCTAGC	1 cut(s)	471
BspPI	GGATC	3 cut(s)	485, 498, 802
BsrGI	TGTACA	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	68, 795
BssECI	CCNNGG	3 cut(s)	232, 697, 723
BssMI	GATC	5 cut(s)	70, 96, 490, 548, 794
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	697, 723
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	217, 844
Bst6I	CTCTTC	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	862
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	3 cut(s)	6, 341, 761
BstDSI	CCRYGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	5 cut(s)	73, 99, 493, 551, 797
BstMAI	GTCTC	3 cut(s)	501, 576, 833
BstMBI	GATC	5 cut(s)	70, 96, 490, 548, 794
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 270, 457, 468
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	3 cut(s)	132, 339, 863
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	2 cut(s)	412, 609
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	490, 794
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	2 cut(s)	490, 794
BstZI	CGGCCG	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	11, 261
BtgI	CCRYGG	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	469
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	594, 694, 870
Csp6I	GTAC	2 cut(s)	802, 863
CviAII	CATG	8 cut(s)	129, 226, 336, 457, 569, 724, 860, 903
CviQI	GTAC	2 cut(s)	802, 863
DdeI	CTNAG	3 cut(s)	6, 341, 761
DpnI	GATC	5 cut(s)	72, 98, 492, 550, 796
DpnII	GATC	5 cut(s)	70, 96, 490, 548, 794
EaeI	YGGCCR	1 cut(s)	259
EagI	CGGCCG	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EclXI	CGGCCG	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	697, 723
Eco47I	GGWCC	3 cut(s)	594, 694, 870
Eco52I	CGGCCG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	697, 723
ErhI	CCWWGG	2 cut(s)	697, 723
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	8 cut(s)	132, 229, 339, 460, 572, 727, 863, 906
FaqI	GGGAC	2 cut(s)	707, 761
FatI	CATG	8 cut(s)	128, 225, 335, 456, 568, 723, 859, 902
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	4 cut(s)	12, 162, 165, 262
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	12, 162, 165, 262
FspBI	CTAG	3 cut(s)	440, 468, 554
FspI	TGCGCA	1 cut(s)	461
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	4 cut(s)	12, 162, 165, 262
GsuI	CTGGAG	2 cut(s)	255, 723
HaeIII	GGCC	2 cut(s)	11, 261
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	8 cut(s)	132, 229, 339, 460, 572, 727, 863, 906
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	5 cut(s)	374, 390, 671, 705, 785
HphI	GGTGA	4 cut(s)	376, 584, 638, 821
Hpy166II	GTNNAC	4 cut(s)	121, 292, 802, 894
Hpy188I	TCNGA	6 cut(s)	70, 331, 342, 389, 490, 926
Hpy188III	TCNNGA	3 cut(s)	100, 440, 740
Hpy8I	GTNNAC	4 cut(s)	121, 292, 802, 894
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	724
HpyCH4III	ACNGT	2 cut(s)	217, 844
HpyCH4IV	ACGT	3 cut(s)	383, 516, 750
HpyCH4V	TGCA	5 cut(s)	54, 113, 167, 659, 859
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 270, 457, 468
HpyF3I	CTNAG	3 cut(s)	6, 341, 761
HpySE526I	ACGT	3 cut(s)	383, 516, 750
Hsp92II	CATG	8 cut(s)	132, 229, 339, 460, 572, 727, 863, 906
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	5 cut(s)	70, 96, 490, 548, 794
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	8 cut(s)	49, 219, 246, 320, 347, 448, 753, 776
Lsp1109I	GCAGC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	440, 468, 554
MaeII	ACGT	3 cut(s)	383, 516, 750
MaeIII	GTNAC	2 cut(s)	59, 348
MalI	GATC	5 cut(s)	72, 98, 492, 550, 796
MboI	GATC	5 cut(s)	70, 96, 490, 548, 794
MboII	GAAGA	3 cut(s)	289, 389, 477
MflI	RGATCY	2 cut(s)	490, 794
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	4 cut(s)	423, 681, 728, 814
MlyI	GAGTC	3 cut(s)	368, 399, 665
MmeI	TCCRAC	1 cut(s)	757
MnlI	CCTC	9 cut(s)	53, 134, 219, 284, 308, 738, 747, 826, 861
MseI	TTAA	2 cut(s)	135, 426
MslI	CAYNNNNRTG	4 cut(s)	355, 567, 573, 722
MspA1I	CMGCKG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	11, 270, 457, 468
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	5 cut(s)	70, 96, 490, 548, 794
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	8 cut(s)	132, 229, 339, 460, 572, 727, 863, 906
NlaIV	GGNNCC	2 cut(s)	492, 695
NmuCI	GTSAC	1 cut(s)	348
NsbI	TGCGCA	1 cut(s)	461
NspI	RCATGY	3 cut(s)	132, 339, 863
OliI	CACNNNNGTG	1 cut(s)	355
PciI	ACATGT	1 cut(s)	335
PctI	GAATGC	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	705, 785
PkrI	GCNGC	4 cut(s)	13, 163, 166, 263
PleI	GAGTC	3 cut(s)	368, 398, 665
PpsI	GAGTC	3 cut(s)	368, 398, 665
PpuMI	RGGWCCY	1 cut(s)	694
PscI	ACATGT	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	492, 695
PspPI	GGNCC	3 cut(s)	594, 694, 870
PspPPI	RGGWCCY	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	490, 794
RsaI	GTAC	2 cut(s)	803, 864
RsaNI	GTAC	2 cut(s)	802, 863
RseI	CAYNNNNRTG	4 cut(s)	355, 567, 573, 722
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	135, 426
SatI	GCNGC	4 cut(s)	12, 162, 165, 262
Sau3AI	GATC	5 cut(s)	70, 96, 490, 548, 794
Sau96I	GGNCC	3 cut(s)	594, 694, 870
SchI	GAGTC	3 cut(s)	368, 399, 665
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	483
SfcI	CTRYAG	2 cut(s)	412, 609
SinI	GGWCC	3 cut(s)	594, 694, 870
SmiMI	CAYNNNNRTG	4 cut(s)	355, 567, 573, 722
Sse9I	AATT	4 cut(s)	423, 681, 728, 814
SsiI	CCGC	3 cut(s)	12, 162, 262
SspMI	CTAG	3 cut(s)	440, 468, 554
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	697, 723
TaaI	ACNGT	2 cut(s)	217, 844
TaiI	ACGT	3 cut(s)	386, 519, 753
TaqI	TCGA	4 cut(s)	81, 120, 313, 377
TaqII	GACCGA	2 cut(s)	611, 887
TasI	AATT	4 cut(s)	423, 681, 728, 814
TatI	WGTACW	2 cut(s)	801, 862
TauI	GCSGC	3 cut(s)	14, 164, 264
TfiI	GAWTC	2 cut(s)	705, 785
Tru1I	TTAA	2 cut(s)	135, 426
Tru9I	TTAA	2 cut(s)	135, 426
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	33, 706
TspGWI	ACGGA	2 cut(s)	483, 594
TspRI	CASTG	1 cut(s)	795
VpaK11BI	GGWCC	3 cut(s)	594, 694, 870
XapI	RAATTY	1 cut(s)	728
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	3 cut(s)	132, 339, 863
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	3 cut(s)	440, 468, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.