Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

3532324 .. 3533523

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G050500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCAAACTGGTCTGAGCTCCAACCCGACCTCTTACAGCTGATCATGAACAATCTCTCGTTCGTCAACATCCTTCGATTCAGAGCTGTTTGTTCTTCGTGGAATCACGCTGCAAAATCTTGTGCCACTTCATCATGTCCTCCTCCTCGAACCCCTATACTCCATGGCTCATGCTCCCTAGTAGTTATGAAGAAAACGACAAAAAAAACCCTGCCAGTGGAGCTCGTTGCTTCTACAGTCTTGAAGAACAGAAAGTTTACATCATCAAGAGCGCGTTTCAAGACTATGATCATGCTGCTGCTTTGCGTGGGTTCATCACACGGGTGGCTGTTCATCAACAGCAAAGCAAACTCACATCTTTTAAACCCGTTTTCGCGACGTCAAATTCAGCTCCCGCTGATGTGGTTTCATATTGCCAAGGCTGTCCTCTCCTCCGACCCAACTCGTGACAACAACTTCGCTGTTGTGGTGATTCATAGTTTTTTTCCGTCAAAACTTGCATTTTATAAGCATGCGGAGGAGGACAGCAGAATCAGACGGACAGACTTAAATGGTGTGCATGGAGGATATTGTGATGTTATTTTTCACAATGAGCAGTTGTTTGCATTGGCTGGGGATGGCTCGGTTGAAGTCTGGGACTTCATCAAGTCCTTTCCCATCGAAAGCATTGATCTTGCTCAACCGTTTGCGGAGATTAAAAAGGCGGATATAATGCAAGACTTTTCCATTTACAAGTATTCTACTCAGAATTATCTGGTGGAGTCATTGGGTGAGATTTTGTATGTGGGGAGAGTGATAGGGAACTTTGTTAACCATAAGGGCATAGTCATTGGTCAGACGGATCTTCCTGAGGGGTTTGCTGTTATTTGTCCCTATAGAACTCTGCGGTTTTACATCCTCAAGTTGAACATCACTGCCAAAAAGTGGGAGAAAGGATTTTCCAGAATTGGAAGAAAACTCAATTTACTTCACAGGTGGGATATAAATTTCCAATTAGACTCTGCTGAGAATGGTTATGGTGGTCATGATAATGGAGTTTACAACATAGGAAATAAAGTTGTGAAGCCATTTGATCAGCTTGATAAGTGGAAAATTGATCCACCACCCTTCTGGATTGTTCCTAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

377

Amino Acids

42.78

Weight (kDa)

9.38

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AatII	GACGTC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	924
AccII	CGCG	2 cut(s)	274, 376
AciI	CCGC	5 cut(s)	395, 515, 689, 704, 886
AclWI	GGATC	2 cut(s)	849, 1091
AcsI	RAATTY	2 cut(s)	384, 985
AcyI	GRCGYC	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	217, 924
AgsI	TTSAA	4 cut(s)	244, 280, 629, 907
AleI	CACNNNNGTG	1 cut(s)	322
AluBI	AGCT	6 cut(s)	19, 40, 86, 223, 391, 1078
AluI	AGCT	6 cut(s)	19, 40, 86, 223, 391, 1078
Alw21I	GWGCWC	2 cut(s)	21, 225
AlwI	GGATC	2 cut(s)	849, 1091
ApeKI	GCWGC	3 cut(s)	110, 295, 298
ApoI	RAATTY	2 cut(s)	384, 985
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	481, 782
AxyI	CCTNAGG	1 cut(s)	849
BanII	GRGCYC	2 cut(s)	21, 225
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	21, 225
BbvI	GCAGC	3 cut(s)	97, 282, 285
BccI	CCATC	2 cut(s)	611, 665
BclI	TGATCA	3 cut(s)	42, 288, 1072
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	234, 874
BisI	GCNGC	3 cut(s)	111, 296, 299
BlsI	GCNGC	3 cut(s)	112, 297, 300
BpuEI	CTTGAG	1 cut(s)	884
BsaHI	GRCGYC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	163, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 924
Bse1I	ACTGG	2 cut(s)	14, 215
Bse21I	CCTNAGG	1 cut(s)	849
BseDI	CCNNGG	2 cut(s)	163, 417
BseGI	GGATG	3 cut(s)	69, 622, 894
BseLI	CCNNNNNNNGG	2 cut(s)	217, 924
BseMII	CTCAG	4 cut(s)	6, 758, 840, 996
BseNI	ACTGG	2 cut(s)	14, 215
BseRI	GAGGAG	4 cut(s)	132, 135, 421, 533
BseXI	GCAGC	3 cut(s)	97, 282, 285
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	2 cut(s)	274, 376
BsiHKAI	GWGCWC	2 cut(s)	21, 225
BslFI	GGGAC	2 cut(s)	650, 855
BslI	CCNNNNNNNGG	2 cut(s)	217, 924
BsmFI	GGGAC	2 cut(s)	650, 855
Bsp1286I	GDGCHC	2 cut(s)	21, 225
Bsp143I	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
Bsp19I	CCATGG	1 cut(s)	163
Bsp68I	TCGCGA	1 cut(s)	376
BspACI	CCGC	5 cut(s)	395, 515, 689, 704, 886
BspCNI	CTCAG	4 cut(s)	7, 757, 841, 997
BspFNI	CGCG	2 cut(s)	274, 376
BspHI	TCATGA	2 cut(s)	45, 1024
BspPI	GGATC	2 cut(s)	849, 1091
BsrI	ACTGG	2 cut(s)	14, 215
BssECI	CCNNGG	2 cut(s)	163, 417
BssMI	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
BssNI	GRCGYC	1 cut(s)	379
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	163, 417
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	238, 684
BstACI	GRCGYC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	4 cut(s)	15, 744, 849, 1005
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	69, 622, 894
BstFNI	CGCG	2 cut(s)	274, 376
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	6 cut(s)	45, 291, 673, 844, 1075, 1099
BstMBI	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	515
BstSFI	CTRYAG	2 cut(s)	234, 874
BstUI	CGCG	2 cut(s)	274, 376
BstV1I	GCAGC	3 cut(s)	97, 282, 285
BstX2I	RGATCY	1 cut(s)	841
BstXI	CCANNNNNNTGG	1 cut(s)	1110
BstYI	RGATCY	1 cut(s)	841
Bsu36I	CCTNAGG	1 cut(s)	849
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	69, 622, 894
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	2 cut(s)	222, 912
BtuMI	TCGCGA	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	513
CciI	TCATGA	2 cut(s)	45, 1024
CfoI	GCGC	1 cut(s)	274
CviAII	CATG	9 cut(s)	46, 135, 164, 171, 292, 512, 560, 1025, 1128
DdeI	CTNAG	4 cut(s)	15, 744, 849, 1005
DpnI	GATC	6 cut(s)	44, 290, 672, 843, 1074, 1098
DpnII	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
DraI	TTTAAA	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	719
Ecl136II	GAGCTC	2 cut(s)	19, 223
Eco130I	CCWWGG	2 cut(s)	163, 417
Eco24I	GRGCYC	2 cut(s)	21, 225
Eco53kI	GAGCTC	2 cut(s)	19, 223
Eco81I	CCTNAGG	1 cut(s)	849
EcoICRI	GAGCTC	2 cut(s)	19, 223
EcoT14I	CCWWGG	2 cut(s)	163, 417
EcoT38I	GRGCYC	2 cut(s)	21, 225
ErhI	CCWWGG	2 cut(s)	163, 417
FaeI	CATG	9 cut(s)	49, 138, 167, 174, 295, 515, 563, 1028, 1131
FaqI	GGGAC	2 cut(s)	650, 855
FatI	CATG	9 cut(s)	45, 134, 163, 170, 291, 511, 559, 1024, 1127
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	3 cut(s)	42, 288, 1072
Fnu4HI	GCNGC	3 cut(s)	111, 296, 299
FokI	GGATG	3 cut(s)	56, 629, 881
FriOI	GRGCYC	2 cut(s)	21, 225
Fsp4HI	GCNGC	3 cut(s)	111, 296, 299
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	111, 296, 299
GsaI	CCCAGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	9 cut(s)	49, 138, 167, 174, 295, 515, 563, 1028, 1131
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	2 cut(s)	67, 811
HindII	GTYRAC	2 cut(s)	67, 811
HinfI	GANTC	6 cut(s)	78, 103, 472, 531, 761, 998
HpaI	GTTAAC	1 cut(s)	811
HphI	GGTGA	2 cut(s)	481, 782
Hpy166II	GTNNAC	4 cut(s)	67, 258, 811, 1039
Hpy188I	TCNGA	6 cut(s)	16, 83, 436, 536, 747, 837
Hpy8I	GTNNAC	4 cut(s)	67, 258, 811, 1039
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	2 cut(s)	83, 1117
HpyCH4III	ACNGT	2 cut(s)	238, 684
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	5 cut(s)	113, 500, 559, 605, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	4 cut(s)	15, 744, 849, 1005
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	9 cut(s)	49, 138, 167, 174, 295, 515, 563, 1028, 1131
HspAI	GCGC	1 cut(s)	272
Ksp22I	TGATCA	3 cut(s)	42, 288, 1072
KspAI	GTTAAC	1 cut(s)	811
Kzo9I	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
LmnI	GCTCC	4 cut(s)	24, 179, 220, 396
LpnPI	CCDG	9 cut(s)	224, 228, 597, 619, 740, 861, 955, 958, 1096
Lsp1109I	GCAGC	3 cut(s)	97, 282, 285
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	6 cut(s)	44, 290, 672, 843, 1074, 1098
MboI	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
MboII	GAAGA	5 cut(s)	87, 202, 256, 836, 963
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	2 cut(s)	21, 225
MluCI	AATT	7 cut(s)	384, 748, 945, 961, 985, 992, 1092
MlyI	GAGTC	2 cut(s)	770, 992
MmeI	TCCRAC	2 cut(s)	46, 459
MseI	TTAA	4 cut(s)	362, 548, 696, 810
MslI	CAYNNNNRTG	2 cut(s)	322, 1029
MspA1I	CMGCKG	2 cut(s)	40, 397
MvnI	CGCG	2 cut(s)	274, 376
MwoI	GCNNNNNNNGC	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
NlaIII	CATG	9 cut(s)	49, 138, 167, 174, 295, 515, 563, 1028, 1131
NmuCI	GTSAC	1 cut(s)	446
NruI	TCGCGA	1 cut(s)	376
NspI	RCATGY	1 cut(s)	515
OliI	CACNNNNGTG	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	515
PagI	TCATGA	2 cut(s)	45, 1024
PfeI	GAWTC	4 cut(s)	78, 103, 472, 531
PflMI	CCANNNNNTGG	1 cut(s)	924
PkrI	GCNGC	3 cut(s)	112, 297, 300
PleI	GAGTC	2 cut(s)	769, 992
PpsI	GAGTC	2 cut(s)	769, 992
PsiI	TTATAA	1 cut(s)	507
Psp124BI	GAGCTC	2 cut(s)	21, 225
PspFI	CCCAGC	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	40
RruI	TCGCGA	1 cut(s)	376
RseI	CAYNNNNRTG	2 cut(s)	322, 1029
SacI	GAGCTC	2 cut(s)	21, 225
SaqAI	TTAA	4 cut(s)	362, 548, 696, 810
SatI	GCNGC	3 cut(s)	111, 296, 299
Sau3AI	GATC	6 cut(s)	42, 288, 670, 841, 1072, 1096
SchI	GAGTC	2 cut(s)	770, 992
SduI	GDGCHC	2 cut(s)	21, 225
SetI	ASST	9 cut(s)	21, 33, 42, 88, 225, 382, 393, 977, 1080
SfcI	CTRYAG	2 cut(s)	234, 874
SmiMI	CAYNNNNRTG	2 cut(s)	322, 1029
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	7 cut(s)	384, 748, 945, 961, 985, 992, 1092
SsiI	CCGC	5 cut(s)	395, 515, 689, 704, 886
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	2 cut(s)	21, 225
StyI	CCWWGG	2 cut(s)	163, 417
TaaI	ACNGT	2 cut(s)	238, 684
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	76, 148, 660
TasI	AATT	7 cut(s)	384, 748, 945, 961, 985, 992, 1092
TfiI	GAWTC	4 cut(s)	78, 103, 472, 531
Tru1I	TTAA	4 cut(s)	362, 548, 696, 810
Tru9I	TTAA	4 cut(s)	362, 548, 696, 810
TscAI	CASTG	2 cut(s)	222, 919
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	110, 295, 298
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	8 cut(s)	62, 120, 203, 303, 322, 398, 464, 631
TspGWI	ACGGA	3 cut(s)	477, 553, 854
TspRI	CASTG	2 cut(s)	222, 919
Van91I	CCANNNNNTGG	1 cut(s)	924
XapI	RAATTY	2 cut(s)	384, 985
XceI	RCATGY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1107
XspI	CTAG	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.