Rroxscaffold_5G00340130

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000700
Physical Location & Seq
Reverse (-)
8464113 .. 8465202
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340130.1

Sequence Viewer

Length: 666 bp
ATGGGGACAACACATGCATGGACCGACATAGGAGATGAGTCGAAAGAATACTACTGTGATATTATGTTCCATAATAATGACCATTTATATGCATTGGCACGCGACGGTTCAGTTGGAGTTTGGGACTTGACGAAATCTTTTCCAACAAAAACTTTAAATCTTCAGCCTTTTGTAGACCAGTCGGAGATAAAAGATTTTTCCTCTACGAAATTTTCTGTCCAGAATTATTTGGTGGAGTCATCAGGTTGCCTTTTGTTTGTTCAGCGATTTATATCGGAGAATGAGGAGGAATATAAGCATTGGGTTGATCATGAAGGCAAAGCTACTTGTCCCTATAGTAGTTCCCTGCACTTCCATATCTGTAAATGTCCCTATAGAACTTGCACTTTCATGAGACAAGTTATGGTACTTAGTTCCAGTGGCAAAGAGGGGGAGAAAGTGGAATCTTTGCATGATCGAGCTTTGTTTTTGGGTAATAATCATTCAGTGTTGGTGTCTACCAGCGACTTTCCTGAATGCCAAGAAAACTCAATTTACTTTGCAGATGATAATTACTTTGAAATGCGTTTGAAATACTATCTTGATGATGAACATAATTATGGGGGTCATGATCTTGGAATATACAACTTAAAAGATAATGTCGATCGTCAAGCCAATAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

221

Amino Acids

25.59

Weight (kDa)

5.11

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 5 - 209 1.7e-28 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27550
fragaria_vesca FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis pycom13g10170 pycom16g10020
rosa_chinensis RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 174, 497
AccII CGCG 1 cut(s) 102
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 408
AgsI TTSAA 2 cut(s) 560, 571
AluBI AGCT 2 cut(s) 323, 461
AluI AGCT 2 cut(s) 323, 461
Alw26I GTCTC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 388
BfmI CTRYAG 2 cut(s) 334, 373
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 178, 417
Bse8I GATNNNNATC 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 271
BseNI ACTGG 2 cut(s) 178, 417
BseRI GAGGAG 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 646
BsiEI CGRYCG 1 cut(s) 646
BslFI GGGAC 4 cut(s) 19, 137, 315, 354
BsmAI GTCTC 1 cut(s) 388
BsmFI GGGAC 4 cut(s) 19, 137, 315, 354
BsmI GAATGC 1 cut(s) 521
Bsp143I GATC 4 cut(s) 307, 454, 610, 643
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 3 cut(s) 310, 390, 607
BsrI ACTGG 2 cut(s) 178, 417
BssMI GATC 4 cut(s) 307, 454, 610, 643
Bst4CI ACNGT 2 cut(s) 56, 107
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 410
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 4 cut(s) 310, 457, 613, 646
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 4 cut(s) 307, 454, 610, 643
BstMCI CGRYCG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 17
BstSFI CTRYAG 2 cut(s) 334, 373
BstUI CGCG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 424, 492
Cac8I GCNNGC 1 cut(s) 100
CciI TCATGA 3 cut(s) 310, 390, 607
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 407
CviAII CATG 6 cut(s) 14, 18, 311, 391, 452, 608
CviJI RGCY 4 cut(s) 166, 323, 461, 653
CviKI_1 RGCY 4 cut(s) 166, 323, 461, 653
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 1 cut(s) 410
DpnI GATC 4 cut(s) 309, 456, 612, 645
DpnII GATC 4 cut(s) 307, 454, 610, 643
DraI TTTAAA 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 146
EcoT22I ATGCAT 2 cut(s) 19, 94
FaeI CATG 6 cut(s) 17, 21, 314, 394, 455, 611
FaqI GGGAC 4 cut(s) 19, 137, 315, 354
FatI CATG 6 cut(s) 13, 17, 310, 390, 451, 607
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 2 cut(s) 174, 497
Hin1II CATG 6 cut(s) 17, 21, 314, 394, 455, 611
HinfI GANTC 3 cut(s) 38, 236, 443
Hpy166II GTNNAC 2 cut(s) 175, 498
Hpy188I TCNGA 2 cut(s) 184, 277
Hpy188III TCNNGA 6 cut(s) 220, 311, 391, 512, 581, 608
Hpy8I GTNNAC 2 cut(s) 175, 498
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 56, 107
HpyCH4V TGCA 6 cut(s) 17, 92, 349, 384, 451, 542
HpyF3I CTNAG 1 cut(s) 410
Hsp92II CATG 6 cut(s) 17, 21, 314, 394, 455, 611
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 307, 454, 610, 643
LpnPI CCDG 7 cut(s) 191, 228, 233, 359, 430, 514, 525
MalI GATC 4 cut(s) 309, 456, 612, 645
MboI GATC 4 cut(s) 307, 454, 610, 643
MboII GAAGA 1 cut(s) 152
MluCI AATT 5 cut(s) 209, 223, 531, 550, 595
MlyI GAGTC 2 cut(s) 47, 245
MmeI TCCRAC 3 cut(s) 94, 162, 167
MnlI CCTC 4 cut(s) 211, 277, 280, 421
Mph1103I ATGCAT 2 cut(s) 19, 94
MseI TTAA 2 cut(s) 155, 629
MslI CAYNNNNRTG 5 cut(s) 16, 75, 87, 389, 597
Mva1269I GAATGC 1 cut(s) 521
MvnI CGCG 1 cut(s) 102
NdeII GATC 4 cut(s) 307, 454, 610, 643
NlaIII CATG 6 cut(s) 17, 21, 314, 394, 455, 611
NsiI ATGCAT 2 cut(s) 19, 94
NspI RCATGY 1 cut(s) 17
PagI TCATGA 3 cut(s) 310, 390, 607
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 443
Ple19I CGATCG 1 cut(s) 646
PleI GAGTC 2 cut(s) 46, 244
PpsI GAGTC 2 cut(s) 46, 244
PspPI GGNCC 1 cut(s) 21
PvuI CGATCG 1 cut(s) 646
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 5 cut(s) 16, 75, 87, 389, 597
SaqAI TTAA 2 cut(s) 155, 629
Sau3AI GATC 4 cut(s) 307, 454, 610, 643
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 2 cut(s) 47, 245
SetI ASST 3 cut(s) 247, 325, 463
SfcI CTRYAG 2 cut(s) 334, 373
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 5 cut(s) 16, 75, 87, 389, 597
Sse9I AATT 5 cut(s) 209, 223, 531, 550, 595
TaaI ACNGT 2 cut(s) 56, 107
TaqI TCGA 3 cut(s) 41, 457, 642
TaqII GACCGA 1 cut(s) 38
TasI AATT 5 cut(s) 209, 223, 531, 550, 595
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 155, 629
Tru9I TTAA 2 cut(s) 155, 629
TscAI CASTG 2 cut(s) 424, 492
TspDTI ATGAA 3 cut(s) 327, 379, 603
TspRI CASTG 2 cut(s) 424, 492
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 17
XmiI GTMKAC 2 cut(s) 174, 497
Zsp2I ATGCAT 2 cut(s) 19, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.