Prupe.1G050400_v2.0.a1

f-box protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
3530372 .. 3531831
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G050400.1

Sequence Viewer

Length: 1257 bp
ATGGCAAAACTGAAAGTATACCACCGTCGCCACAAAAAGAAAAGAAGATCACCAAACTGGTCTGAGCTCCAGCCCGAACTCTTACAGCTGATCACGAACAATCTCTCTTTCGTCAACGTCCTTCAATTCAAAGCCGTTTGTTCTTCGTGGAAACACGCTGCCACTTCGTCTCATACTCCATGGCTCATGCTCCCTAGTAGTAGCAGTCGAGAAAACGGCCAAAACAACCCTGACAGTGCAGCTCGTTGCTTCTACAGTCTTGAAGAACAAAAGGTTTACACCATCAAGAACGCGTTTCAAGGCTTTGATCATGGGGCTCGGTGCCTGGGTTCATCACATGGGTGGCTGGTCATTATGGACAGCAATGGAAACCCACATCTTTTAAACCCGTTTTCGCGACGTCAAATTCAGCTCCCGCTGATTTGGCCCTTTCCTCGCTTGACCGGTGATCTCTCCTTGGAAAGTTTACGGATGTGTGTTAGTATTGCCAAGGCTGTCCTCTCCTCCGACCCGTCTTGCGACAACAACTTCGCTGTTGTGGTGATTTATGATTCTTTACCGTCAAAACTTTCATTTTGTAAGCATGGGGAGGACAGCAGATGGACAGTCTTAAATGCGCGTAGAGAATATTGTGATGTTATTTTCCACAATGAGCAGTTGTTTGCATTGGCTGGGGATGGCTCGGTTGAAGTCTGGGACTTCAACAACTCTTTTCCCATCAAAACCATCGACCTTCGTCAACCATTTGCAGAAATTGGAAACGTGGATATAGTGAAAGACTTTTCAAGGGGCATTCATTCTACTCAGACTTATTTGGTGGAGTCTTTGGCTGAGATTTTGTTTGTGGGGAGAATCATTCAGAACTTTGTCAAGCATGAGGACATTGGTGAGGGGGATCTTCCTCAGGAGAGTGATTATATCAGTCCCTATAGAACTCTGCACTTTTACGTTCTCAAATTGAACATCACTGCCAAAAAGTGGGAGAAAGTAGAATCATCGTTGCGCAATCAAGCTTTATTTTTGGGTGGAAATCAATCGATGTCAGTATCCACTCGGGATTTTCCAGAATTAGAAGAAAACTCAATTTACTTCACAGATGATCGTTGGGAGGAGATAAATTATGTGGAAGATTATGGTGGTCATGATGTTGGAGTTTACAACCTAGGAAATAAAATTGTGAAGACACTAGTACTTGATCAGTTTAATAAGTGGAGAGTTGATCCACCACCCTTTTGGATTGTTCCTAATCCATGGTGA

Protein Analysis

419

Amino Acids

48.01

Weight (kDa)

6.36

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 403
Acc16I TGCGCA 1 cut(s) 1004
AccB1I GGYRCC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 978
AccI GTMKAC 1 cut(s) 18
AccII CGCG 3 cut(s) 293, 397, 619
AciI CCGC 1 cut(s) 416
AclWI GGATC 2 cut(s) 903, 1214
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 400
AfaI GTAC 1 cut(s) 1191
AfiI CCNNNNNNNGG 1 cut(s) 978
AflIII ACRYGT 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 443
AgsI TTSAA 8 cut(s) 125, 130, 263, 299, 689, 703, 786, 961
AhlI ACTAGT 1 cut(s) 1186
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 340
AluBI AGCT 5 cut(s) 67, 88, 242, 412, 1013
AluI AGCT 5 cut(s) 67, 88, 242, 412, 1013
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 903, 1214
Ama87I CYCGRG 1 cut(s) 1053
AoxI GGCC 2 cut(s) 217, 425
ApeKI GCWGC 2 cut(s) 158, 239
ApoI RAATTY 1 cut(s) 405
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AsiGI ACCGGT 1 cut(s) 443
AspA2I CCTAGG 1 cut(s) 1162
AspLEI GCGC 2 cut(s) 619, 1005
AspS9I GGNCC 1 cut(s) 426
AsuHPI GGTGA 4 cut(s) 42, 458, 553, 899
AvaI CYCGRG 1 cut(s) 1053
AvrII CCTAGG 1 cut(s) 1162
AxyI CCTNAGG 1 cut(s) 903
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 2 cut(s) 69, 319
BbsI GAAGAC 1 cut(s) 1187
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 145, 251
BccI CCATC 5 cut(s) 290, 594, 671, 725, 734
BceAI ACGGC 2 cut(s) 119, 232
BciT130I CCWGG 1 cut(s) 326
BciVI GTATCC 1 cut(s) 1057
BclI TGATCA 3 cut(s) 90, 307, 1195
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 1186
BfaI CTAG 3 cut(s) 195, 1163, 1187
BfmI CTRYAG 2 cut(s) 253, 928
BfuI GTATCC 1 cut(s) 1057
BisI GCNGC 2 cut(s) 159, 240
BlnI CCTAGG 1 cut(s) 1162
BlsI GCNGC 2 cut(s) 160, 241
BmcAI AGTACT 1 cut(s) 1191
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 1053
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 326
BoxI GACNNNNGTC 1 cut(s) 735
BpiI GAAGAC 1 cut(s) 1187
BpmI CTGGAG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 1037
BsaHI GRCGYC 1 cut(s) 400
BsaJI CCNNGG 6 cut(s) 179, 325, 456, 489, 1162, 1250
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 978
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 62
Bse21I CCTNAGG 1 cut(s) 903
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 326
BseCI ATCGAT 1 cut(s) 1037
BseDI CCNNGG 6 cut(s) 179, 325, 456, 489, 1162, 1250
BseGI GGATG 2 cut(s) 477, 682
BseLI CCNNNNNNNGG 1 cut(s) 978
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 4 cut(s) 54, 818, 822, 917
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 493, 1124
BseXI GCAGC 2 cut(s) 145, 251
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 2 cut(s) 258, 923
Bsh1236I CGCG 3 cut(s) 293, 397, 619
BshFI GGCC 2 cut(s) 219, 427
BshNI GGYRCC 1 cut(s) 321
BshTI ACCGGT 1 cut(s) 443
BshVI ATCGAT 1 cut(s) 1037
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 1053
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 2 cut(s) 710, 909
BslI CCNNNNNNNGG 1 cut(s) 978
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 2 cut(s) 710, 909
BsmI GAATGC 1 cut(s) 792
BsnI GGCC 2 cut(s) 219, 427
BsoBI CYCGRG 1 cut(s) 1053
Bsp1286I GDGCHC 2 cut(s) 69, 319
Bsp143I GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
Bsp19I CCATGG 2 cut(s) 179, 1250
Bsp68I TCGCGA 1 cut(s) 397
BspACI CCGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 219, 427
BspCNI CTCAG 4 cut(s) 55, 817, 823, 916
BspDI ATCGAT 1 cut(s) 1037
BspFNI CGCG 3 cut(s) 293, 397, 619
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 1 cut(s) 323
BspPI GGATC 2 cut(s) 903, 1214
BspT107I GGYRCC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 6 cut(s) 179, 325, 456, 489, 1162, 1250
BssMI GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
BssNAI GTATAC 1 cut(s) 19
BssNI GRCGYC 1 cut(s) 400
BssT1I CCWWGG 5 cut(s) 179, 456, 489, 1162, 1250
Bst1107I GTATAC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 5 cut(s) 26, 236, 257, 561, 607
BstACI GRCGYC 1 cut(s) 400
BstDEI CTNAG 4 cut(s) 63, 804, 831, 903
BstDSI CCRYGG 2 cut(s) 179, 1250
BstF5I GGATG 2 cut(s) 477, 682
BstFNI CGCG 3 cut(s) 293, 397, 619
BstHHI GCGC 2 cut(s) 619, 1005
BstKTI GATC 8 cut(s) 50, 93, 310, 451, 898, 1102, 1198, 1222
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 1 cut(s) 326
BstPAI GACNNNNGTC 1 cut(s) 735
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 2 cut(s) 253, 928
BstUI CGCG 3 cut(s) 293, 397, 619
BstV1I GCAGC 2 cut(s) 145, 251
BstV2I GAAGAC 1 cut(s) 1187
BstX2I RGATCY 1 cut(s) 895
BstXI CCANNNNNNTGG 1 cut(s) 1233
BstYI RGATCY 1 cut(s) 895
BstZ17I GTATAC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 1037
Bsu36I CCTNAGG 1 cut(s) 903
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 2 cut(s) 219, 427
BsuTUI ATCGAT 1 cut(s) 1037
BtgI CCRYGG 2 cut(s) 179, 1250
BtsCI GGATG 2 cut(s) 477, 682
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 2 cut(s) 241, 966
BtuMI TCGCGA 1 cut(s) 397
CciI TCATGA 1 cut(s) 1141
CfoI GCGC 2 cut(s) 619, 1005
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 426
ClaI ATCGAT 1 cut(s) 1037
Csp6I GTAC 1 cut(s) 1190
CspAI ACCGGT 1 cut(s) 443
CviAII CATG 8 cut(s) 180, 187, 311, 338, 584, 875, 1142, 1251
CviQI GTAC 1 cut(s) 1190
DdeI CTNAG 4 cut(s) 63, 804, 831, 903
DpnI GATC 8 cut(s) 49, 92, 309, 450, 897, 1101, 1197, 1221
DpnII GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 5 cut(s) 179, 456, 489, 1162, 1250
Eco24I GRGCYC 2 cut(s) 69, 319
Eco53kI GAGCTC 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 903
Eco88I CYCGRG 1 cut(s) 1053
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 5 cut(s) 179, 456, 489, 1162, 1250
EcoT38I GRGCYC 2 cut(s) 69, 319
ErhI CCWWGG 5 cut(s) 179, 456, 489, 1162, 1250
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 8 cut(s) 183, 190, 314, 341, 587, 878, 1145, 1254
FaqI GGGAC 2 cut(s) 710, 909
FatI CATG 8 cut(s) 179, 186, 310, 337, 583, 874, 1141, 1250
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 3 cut(s) 90, 307, 1195
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 159, 240
FokI GGATG 2 cut(s) 484, 689
FriOI GRGCYC 2 cut(s) 69, 319
Fsp4HI GCNGC 2 cut(s) 159, 240
FspBI CTAG 3 cut(s) 195, 1163, 1187
FspI TGCGCA 1 cut(s) 1004
GlaI GCGC 2 cut(s) 618, 1004
GluI GCNGC 2 cut(s) 159, 240
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 2 cut(s) 219, 427
HapII CCGG 1 cut(s) 444
HhaI GCGC 2 cut(s) 619, 1005
Hin1I GRCGYC 1 cut(s) 400
Hin1II CATG 8 cut(s) 183, 190, 314, 341, 587, 878, 1145, 1254
Hin6I GCGC 2 cut(s) 617, 1003
HinP1I GCGC 2 cut(s) 617, 1003
HincII GTYRAC 2 cut(s) 115, 740
HindII GTYRAC 2 cut(s) 115, 740
HindIII AAGCTT 1 cut(s) 1011
HinfI GANTC 4 cut(s) 551, 821, 852, 992
HpaII CCGG 1 cut(s) 444
HphI GGTGA 4 cut(s) 42, 458, 553, 899
Hpy166II GTNNAC 6 cut(s) 19, 115, 277, 467, 740, 1156
Hpy188I TCNGA 4 cut(s) 64, 508, 807, 861
Hpy188III TCNNGA 9 cut(s) 94, 209, 260, 286, 396, 905, 1055, 1064, 1142
Hpy8I GTNNAC 6 cut(s) 19, 115, 277, 467, 740, 1156
Hpy99I CGWCG 2 cut(s) 30, 402
HpyAV CCTTC 2 cut(s) 131, 743
HpyCH4III ACNGT 5 cut(s) 26, 236, 257, 561, 607
HpyCH4IV ACGT 4 cut(s) 117, 400, 762, 948
HpyCH4V TGCA 4 cut(s) 239, 665, 749, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 4 cut(s) 63, 804, 831, 903
HpySE526I ACGT 4 cut(s) 117, 400, 762, 948
Hsp92I GRCGYC 1 cut(s) 400
Hsp92II CATG 8 cut(s) 183, 190, 314, 341, 587, 878, 1145, 1254
HspAI GCGC 2 cut(s) 617, 1003
Ksp22I TGATCA 3 cut(s) 90, 307, 1195
Kzo9I GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
LmnI GCTCC 3 cut(s) 72, 195, 417
Lsp1109I GCAGC 2 cut(s) 145, 251
MaeI CTAG 3 cut(s) 195, 1163, 1187
MaeII ACGT 4 cut(s) 117, 400, 762, 948
MalI GATC 8 cut(s) 49, 92, 309, 450, 897, 1101, 1197, 1221
MboI GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
MboII GAAGA 7 cut(s) 57, 135, 275, 890, 1085, 1139, 1192
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 2 cut(s) 69, 319
MluCI AATT 8 cut(s) 125, 405, 753, 956, 1067, 1083, 1117, 1173
MluI ACGCGT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 830
MmeI TCCRAC 2 cut(s) 531, 1129
MnlI CCTC 8 cut(s) 444, 509, 514, 583, 871, 883, 912, 1102
MseI TTAA 3 cut(s) 383, 611, 1203
MslI CAYNNNNRTG 1 cut(s) 340
MspA1I CMGCKG 2 cut(s) 88, 418
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 792
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 3 cut(s) 293, 397, 619
MwoI GCNNNNNNNGC 1 cut(s) 424
NcoI CCATGG 2 cut(s) 179, 1250
NdeII GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
NlaIII CATG 8 cut(s) 183, 190, 314, 341, 587, 878, 1145, 1254
NlaIV GGNNCC 1 cut(s) 323
NruI TCGCGA 1 cut(s) 397
NsbI TGCGCA 1 cut(s) 1004
OliI CACNNNNGTG 1 cut(s) 340
PagI TCATGA 1 cut(s) 1141
PctI GAATGC 1 cut(s) 792
PfeI GAWTC 3 cut(s) 551, 852, 992
PflMI CCANNNNNTGG 1 cut(s) 978
PinAI ACCGGT 1 cut(s) 443
PkrI GCNGC 2 cut(s) 160, 241
PleI GAGTC 1 cut(s) 829
PpsI GAGTC 1 cut(s) 829
PshAI GACNNNNGTC 1 cut(s) 735
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 426
PsuI RGATCY 1 cut(s) 895
PvuII CAGCTG 1 cut(s) 88
RruI TCGCGA 1 cut(s) 397
RsaI GTAC 1 cut(s) 1191
RsaNI GTAC 1 cut(s) 1190
RseI CAYNNNNRTG 1 cut(s) 340
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 383, 611, 1203
SatI GCNGC 2 cut(s) 159, 240
Sau3AI GATC 8 cut(s) 47, 90, 307, 448, 895, 1099, 1195, 1219
Sau96I GGNCC 1 cut(s) 426
ScaI AGTACT 1 cut(s) 1191
SchI GAGTC 1 cut(s) 830
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 2 cut(s) 69, 319
SfcI CTRYAG 2 cut(s) 253, 928
SmiMI CAYNNNNRTG 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 1186
Sse9I AATT 8 cut(s) 125, 405, 753, 956, 1067, 1083, 1117, 1173
SsiI CCGC 1 cut(s) 416
SspI AATATT 1 cut(s) 629
SspMI CTAG 3 cut(s) 195, 1163, 1187
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 5 cut(s) 179, 456, 489, 1162, 1250
TaaI ACNGT 5 cut(s) 26, 236, 257, 561, 607
TaiI ACGT 4 cut(s) 120, 403, 765, 951
TaqI TCGA 3 cut(s) 208, 729, 1037
TasI AATT 8 cut(s) 125, 405, 753, 956, 1067, 1083, 1117, 1173
TatI WGTACW 1 cut(s) 1189
TfiI GAWTC 3 cut(s) 551, 852, 992
Tru1I TTAA 3 cut(s) 383, 611, 1203
Tru9I TTAA 3 cut(s) 383, 611, 1203
TscAI CASTG 2 cut(s) 241, 973
TseI GCWGC 2 cut(s) 158, 239
TspDTI ATGAA 3 cut(s) 321, 561, 785
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 2 cut(s) 241, 973
Van91I CCANNNNNTGG 1 cut(s) 978
XapI RAATTY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 1230
XmaJI CCTAGG 1 cut(s) 1162
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 3 cut(s) 195, 1163, 1187
ZraI GACGTC 1 cut(s) 401
ZrmI AGTACT 1 cut(s) 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.