Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

24075119 .. 24076198

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAATGGCAATGGCTTGCACCACCGAAAGAAAAACAACACCACTACATAGGAATAGGTGGGCTGATGAGCTCCTTCCTGAACTGTTTGAGTTGATCTTGAAAAAGCTCGCTTCAAATGTCCTCGACATCATTCGGTTTAAAGCCGTCTGTTCTTCCTGGAACCGCGCTGCTGCAAGATCGTATACCTCTGCCCCGTTGCCTCAATATCCATGGCTCATGGCCCCCATCCCCAAGTCCCCTCCTATTGATCATGAGAGCAGGTGCTTCCTCAGCCTCGCAGAGAATAAGGTTTACAAGATGGGCTGGAACTGGAAGAAAGCGTTTCATGGCGATGGTGCTTCCTGTTTGGGTTTATCACATGGGTGGCTGGCGATTAAGGAGGTGAACACAGAAAAGAAAACCTACAACGAATATGAAGAAATCGTTCATCTTTTCAATCCAATTTCTAGAGAACGCTTGATGCTTCCCTTGGGGCCGAAATATTCTTCAACTAAAAGAGTTGTTCTTTCCTCGGACCCCTCCCGCAACAACAACTTTGTCGTTGTGGTAATTCATGAGCCCATGTTTGAAGGGAAAAAGGTAGCATTCTATCAGCATGGCAGAGGAAGAGACAACGCTGCTGCTTGGACTAACTTATCACATGGGAGTAGCTGTGCTGATATGGTATTCCACAATGGCCATTTATTTACACTGTCCATCGTCCACACAATTCAAGTTTGGGACTTCAGGGGCACCTATGATAATAATAATTATCCCACGAAGATCATGAATTTTGAACCTTCCATCAATGGGAATGTCAATAGCATGGCGGTTGATGAATGGTTGGTGGAGTCAATGGGTGAGCTTTTGGTTGTGGGAAAGGAACGGTTGGGGAATGATACCAGAGGAGTAGTGAAATTTTTTGTCTACAAATTAAATATTGCTGCCAAAACGTTGGAGAAGGTGGAATCTTTGCGTGATTGTGCTTTATTTTTGGCCAGAAATCAATCTGCAATGTCATTCTCATTATCCACCAAAGAATTGCCAAGATTGAAAGAAAACTCTATTTACTTTCACAGATTTGGATCATATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

360

Amino Acids

40.92

Weight (kDa)

9.15

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	2 cut(s)	185, 909
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	166, 526, 812
AclI	AACGTT	1 cut(s)	935
AclWI	GGATC	1 cut(s)	1075
AcoI	YGGCCR	2 cut(s)	679, 978
AcsI	RAATTY	2 cut(s)	772, 899
AcuI	CTGAAG	1 cut(s)	712
AfiI	CCNNNNNNNGG	1 cut(s)	792
AgsI	TTSAA	8 cut(s)	103, 117, 439, 492, 572, 716, 779, 1036
AjnI	CCWGG	1 cut(s)	158
AleI	CACNNNNGTG	1 cut(s)	364
AluBI	AGCT	4 cut(s)	73, 109, 654, 847
AluI	AGCT	4 cut(s)	73, 109, 654, 847
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	1075
AoxI	GGCC	4 cut(s)	222, 476, 679, 978
ApeKI	GCWGC	5 cut(s)	170, 173, 620, 623, 926
ApoI	RAATTY	2 cut(s)	772, 899
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	223, 476, 517
AsuHPI	GGTGA	2 cut(s)	397, 854
AvaII	GGWCC	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	737
BalI	TGGCCA	2 cut(s)	681, 980
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	2 cut(s)	75, 564
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	5 cut(s)	157, 160, 607, 610, 913
BccI	CCATC	5 cut(s)	236, 295, 329, 707, 794
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	160
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	5 cut(s)	171, 174, 621, 624, 927
BlsI	GCNGC	5 cut(s)	172, 175, 622, 625, 928
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	3 cut(s)	223, 476, 517
BmiI	GGNNCC	5 cut(s)	164, 225, 477, 519, 736
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	1066
BsaJI	CCNNGG	3 cut(s)	212, 471, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	3 cut(s)	12, 18, 1002
Bse8I	GATNNNNATC	1 cut(s)	1066
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	3 cut(s)	212, 471, 513
BseGI	GGATG	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	1066
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMI	GCAATG	3 cut(s)	12, 18, 1002
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	903
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	5 cut(s)	157, 160, 607, 610, 913
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	4 cut(s)	224, 478, 681, 980
BshNI	GGYRCC	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	223, 737
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	1 cut(s)	606
BsmFI	GGGAC	2 cut(s)	223, 737
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	4 cut(s)	224, 478, 681, 980
Bsp1286I	GDGCHC	3 cut(s)	75, 564, 737
Bsp143I	GATC	5 cut(s)	96, 179, 250, 765, 1067
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	3 cut(s)	166, 526, 812
BspANI	GGCC	4 cut(s)	224, 478, 681, 980
BspCNI	CTCAG	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	3 cut(s)	253, 556, 768
BspLI	GGNNCC	5 cut(s)	164, 225, 477, 519, 736
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	1075
BspT107I	GGYRCC	1 cut(s)	734
BsrDI	GCAATG	3 cut(s)	12, 18, 1002
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	3 cut(s)	212, 471, 513
BssMI	GATC	5 cut(s)	96, 179, 250, 765, 1067
BssNAI	GTATAC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	212, 471
Bst1107I	GTATAC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	87, 696, 870
Bst6I	CTCTTC	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	19, 111, 372
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	5 cut(s)	99, 182, 253, 768, 1070
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	5 cut(s)	96, 179, 250, 765, 1067
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	737
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	5 cut(s)	157, 160, 607, 610, 913
BstXI	CCANNNNNNTGG	1 cut(s)	937
BstZ17I	GTATAC	1 cut(s)	186
BsuRI	GGCC	4 cut(s)	224, 478, 681, 980
BtgI	CCRYGG	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	692
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	19, 111, 372
CciI	TCATGA	3 cut(s)	253, 556, 768
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	223, 476, 517
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	5 cut(s)	98, 181, 252, 767, 1069
DpnII	GATC	5 cut(s)	96, 179, 250, 765, 1067
DraI	TTTAAA	1 cut(s)	142
EaeI	YGGCCR	2 cut(s)	679, 978
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	212, 471
Eco24I	GRGCYC	2 cut(s)	75, 564
Eco47I	GGWCC	1 cut(s)	517
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	712
EcoICRI	GAGCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	212, 471
EcoT38I	GRGCYC	2 cut(s)	75, 564
ErhI	CCWWGG	2 cut(s)	212, 471
FaqI	GGGAC	2 cut(s)	223, 737
FauI	CCCGC	1 cut(s)	533
FauNDI	CATATG	1 cut(s)	1072
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	2 cut(s)	185, 909
Fnu4HI	GCNGC	5 cut(s)	171, 174, 621, 624, 927
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	2 cut(s)	75, 564
Fsp4HI	GCNGC	5 cut(s)	171, 174, 621, 624, 927
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	5 cut(s)	171, 174, 621, 624, 927
HaeIII	GGCC	4 cut(s)	224, 478, 681, 980
HhaI	GCGC	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	833, 950
HphI	GGTGA	2 cut(s)	397, 854
Hpy166II	GTNNAC	5 cut(s)	186, 295, 388, 706, 910
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	6 cut(s)	80, 100, 254, 450, 557, 769
Hpy8I	GTNNAC	5 cut(s)	186, 295, 388, 706, 910
HpyAV	CCTTC	4 cut(s)	86, 566, 792, 937
HpyCH4III	ACNGT	3 cut(s)	87, 696, 870
HpyCH4IV	ACGT	1 cut(s)	935
HpyCH4V	TGCA	3 cut(s)	21, 176, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	935
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	96, 179, 250, 765, 1067
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	5 cut(s)	157, 160, 607, 610, 913
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	935
MalI	GATC	5 cut(s)	98, 181, 252, 767, 1069
MboI	GATC	5 cut(s)	96, 179, 250, 765, 1067
MboII	GAAGA	6 cut(s)	147, 328, 431, 480, 621, 775
MhlI	GDGCHC	3 cut(s)	75, 564, 737
MlsI	TGGCCA	2 cut(s)	681, 980
MluCI	AATT	8 cut(s)	444, 552, 711, 751, 772, 899, 914, 1022
MluNI	TGGCCA	2 cut(s)	681, 980
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	1 cut(s)	918
Mox20I	TGGCCA	2 cut(s)	681, 980
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	2 cut(s)	681, 980
MseI	TTAA	4 cut(s)	141, 378, 917, 1078
MslI	CAYNNNNRTG	2 cut(s)	333, 364
Msp20I	TGGCCA	2 cut(s)	681, 980
MspR9I	CCNGG	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	1072
NdeII	GATC	5 cut(s)	96, 179, 250, 765, 1067
NlaIV	GGNNCC	5 cut(s)	164, 225, 477, 519, 736
OliI	CACNNNNGTG	1 cut(s)	364
PagI	TCATGA	3 cut(s)	253, 556, 768
PaqCI	CACCTGC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	950
PfoI	TCCNGGA	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	172, 175, 622, 625, 928
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Psp124BI	GAGCTC	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	935
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	5 cut(s)	164, 225, 477, 519, 736
PspPI	GGNCC	3 cut(s)	223, 476, 517
RseI	CAYNNNNRTG	2 cut(s)	333, 364
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	4 cut(s)	141, 378, 917, 1078
SatI	GCNGC	5 cut(s)	171, 174, 621, 624, 927
Sau3AI	GATC	5 cut(s)	96, 179, 250, 765, 1067
Sau96I	GGNCC	3 cut(s)	223, 476, 517
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	3 cut(s)	75, 564, 737
SfaNI	GCATC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	2 cut(s)	333, 364
Sse9I	AATT	8 cut(s)	444, 552, 711, 751, 772, 899, 914, 1022
SsiI	CCGC	3 cut(s)	166, 526, 812
SspI	AATATT	2 cut(s)	485, 922
SspMI	CTAG	1 cut(s)	450
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	2 cut(s)	212, 471
TaaI	ACNGT	3 cut(s)	87, 696, 870
TaiI	ACGT	1 cut(s)	938
TaqI	TCGA	1 cut(s)	126
TasI	AATT	8 cut(s)	444, 552, 711, 751, 772, 899, 914, 1022
TfiI	GAWTC	1 cut(s)	950
Tru1I	TTAA	4 cut(s)	141, 378, 917, 1078
Tru9I	TTAA	4 cut(s)	141, 378, 917, 1078
TscAI	CASTG	1 cut(s)	699
TseI	GCWGC	5 cut(s)	170, 173, 620, 623, 926
TspDTI	ATGAA	6 cut(s)	317, 419, 432, 545, 785, 834
TspRI	CASTG	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	2 cut(s)	772, 899
XbaI	TCTAGA	1 cut(s)	449
XmiI	GTMKAC	2 cut(s)	185, 909
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.