Rmu_sc0011680.1_g000009

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011680.1
Physical Location & Seq
Reverse (-)
37023 .. 38324
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011680.1_g000009.1.cds

Sequence Viewer

Length: 1302 bp
atggttgaggaaatgttcccctcttggttcaaaaagagaaagagagatccacggtcaacagtggtcgagaataagagcacaaaaaggagaaagagaacaaatatatcatggtcatcatcaaagtggtccgagcttcaaccagaattgctggagatgatcataaaaagactctctttcgtcggcatgcttcgtttcaaagctgtctgttcttcttggaactccattgcacgatcctacgctgcttcgattataaaccaaactccatggctcactctccctagtgatgatgaccacactcgccgcttctatagccttgaagagaaaaaggtttacactgttaagaactcgtttcaagactttcctggtgctagctggtgtgtgggttcatctcatgggtggttggtgattttggacgaaccaaacaatatcccacttctgtttaacccgatttctgaaaatagatcaatggagctcccacatatcccaagcactacaaattccttgcttggttcccctcccttctaccatgttgctaaagctgtcctctcctccgaccagtcttgcaacaacaacttctccgttgcaataatctacggtatccaaccatcaagacttgcattctacaaccgtggagacgaggaatggaccgacttaaatggtgagcatcaagaatattgtgacattatattccacaatgacaaattatttgcattggccgacaatggatgtgttgaagcttgggacttcaggaaaccctctcccaataagatcataaatcttcaacctgcttctgccaaagagttggatctggattacacttccaatcgcgacaagttttccacaaatacttacttggtggagtcatcggatgagataatgtctgtggtgcggtgtatagggaactttgtcaatgaggagggcaaagctatccatgagatagacgttcctgacgagcccaacagtccttgtccctataggacattgcaattttatgtcttcaagctaaattttgcggcgaacaagtgggagaaagtggagtgtttgccgaactgtgctttgtttttgggcggtagccaatcaatatcattgtccactaaagatgtttcagggtgcgaagaaaactcaatttacttcacagatgatcgttgggatgagatagaactgcttggtgatactgactcctatggcggccatgacatgggagtgtacaacttggaagacaaagtcgtgaagcaattttatccatttgataaatggagaattgatccaccacctttttggattgttcctagtccatggtga

Protein Analysis

433

Amino Acids

49.81

Weight (kDa)

5.22

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 793
AccB7I CCANNNNNTGG 1 cut(s) 1198
AccII CGCG 1 cut(s) 828
AciI CCGC 5 cut(s) 301, 889, 1013, 1068, 1188
AclWI GGATC 4 cut(s) 41, 225, 813, 1259
AcoI YGGCCR 2 cut(s) 714, 1189
AcsI RAATTY 2 cut(s) 496, 1006
AcuI CTGAAG 1 cut(s) 730
AfaI GTAC 1 cut(s) 1208
AfiI CCNNNNNNNGG 1 cut(s) 1198
AgsI TTSAA 8 cut(s) 31, 137, 196, 317, 353, 734, 782, 1000
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 8 cut(s) 133, 200, 372, 472, 539, 737, 926, 1003
AluI AGCT 8 cut(s) 133, 200, 372, 472, 539, 737, 926, 1003
Alw21I GWGCWC 2 cut(s) 80, 474
Alw26I GTCTC 1 cut(s) 627
AlwI GGATC 4 cut(s) 41, 225, 813, 1259
AoxI GGCC 2 cut(s) 714, 1189
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 496, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AspS9I GGNCC 2 cut(s) 126, 645
AsuHPI GGTGA 3 cut(s) 415, 671, 1181
AsuNHI GCTAGC 1 cut(s) 368
AvaII GGWCC 2 cut(s) 126, 645
BanII GRGCYC 2 cut(s) 474, 957
BbsI GAAGAC 2 cut(s) 988, 1224
Bbv12I GWGCWC 2 cut(s) 80, 474
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 613
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 608
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 3 cut(s) 279, 369, 1290
BfmI CTRYAG 2 cut(s) 307, 973
BfuAI ACCTGC 1 cut(s) 793
BfuI GTATCC 1 cut(s) 608
BisI GCNGC 4 cut(s) 240, 301, 1014, 1189
BlsI GCNGC 4 cut(s) 241, 302, 1015, 1190
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 2 cut(s) 126, 645
BmgT120I GGNCC 2 cut(s) 126, 645
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 673
BmtI GCTAGC 1 cut(s) 372
BpiI GAAGAC 2 cut(s) 988, 1224
BpmI CTGGAG 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 50, 263, 628, 1295
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 1198
Bse1I ACTGG 1 cut(s) 556
Bse3DI GCAATG 2 cut(s) 222, 980
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 4 cut(s) 50, 263, 628, 1295
BseGI GGATG 3 cut(s) 731, 874, 1156
BseLI CCNNNNNNNGG 1 cut(s) 1198
BseMI GCAATG 2 cut(s) 222, 980
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 2 cut(s) 538, 929
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 828
BshFI GGCC 2 cut(s) 716, 1191
BsiHKAI GWGCWC 2 cut(s) 80, 474
BslFI GGGAC 2 cut(s) 755, 954
BslI CCNNNNNNNGG 1 cut(s) 1198
BsmAI GTCTC 1 cut(s) 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 2 cut(s) 755, 954
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 2 cut(s) 716, 1191
Bsp1286I GDGCHC 3 cut(s) 80, 474, 957
Bsp1407I TGTACA 1 cut(s) 1206
Bsp143I GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
Bsp19I CCATGG 2 cut(s) 263, 1295
Bsp68I TCGCGA 1 cut(s) 828
BspACI CCGC 5 cut(s) 301, 889, 1013, 1068, 1188
BspANI GGCC 2 cut(s) 716, 1191
BspFNI CGCG 1 cut(s) 828
BspLI GGNNCC 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 793
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 4 cut(s) 41, 225, 813, 1259
BsrDI GCAATG 2 cut(s) 222, 980
BsrGI TGTACA 1 cut(s) 1206
BsrI ACTGG 1 cut(s) 556
BssECI CCNNGG 4 cut(s) 50, 263, 628, 1295
BssMI GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
BssT1I CCWWGG 2 cut(s) 263, 1295
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 7 cut(s) 54, 61, 337, 596, 629, 962, 1052
Bst6I CTCTTC 1 cut(s) 312
BstAUI TGTACA 1 cut(s) 1206
BstC8I GCNNGC 2 cut(s) 185, 370
BstDSI CCRYGG 4 cut(s) 50, 263, 628, 1295
BstF5I GGATG 3 cut(s) 731, 874, 1156
BstFNI CGCG 1 cut(s) 828
BstKTI GATC 8 cut(s) 49, 159, 233, 464, 771, 808, 1144, 1267
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 2 cut(s) 307, 973
BstUI CGCG 1 cut(s) 828
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 988, 1224
BstX2I RGATCY 2 cut(s) 46, 805
BstXI CCANNNNNNTGG 2 cut(s) 802, 1278
BstYI RGATCY 2 cut(s) 46, 805
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 2 cut(s) 716, 1191
BtgI CCRYGG 4 cut(s) 50, 263, 628, 1295
BtsCI GGATG 3 cut(s) 731, 874, 1156
BtsIMutI CAGTG 2 cut(s) 66, 333
BtuMI TCGCGA 1 cut(s) 828
BveI ACCTGC 1 cut(s) 793
Cac8I GCNNGC 2 cut(s) 185, 370
Cfr13I GGNCC 2 cut(s) 126, 645
Csp6I GTAC 1 cut(s) 1207
CviAII CATG 9 cut(s) 108, 184, 264, 392, 527, 932, 1193, 1198, 1296
CviQI GTAC 1 cut(s) 1207
DpnI GATC 8 cut(s) 48, 158, 232, 463, 770, 807, 1143, 1266
DpnII GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
EaeI YGGCCR 2 cut(s) 714, 1189
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 2 cut(s) 263, 1295
Eco24I GRGCYC 2 cut(s) 474, 957
Eco47I GGWCC 2 cut(s) 126, 645
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 730
EcoICRI GAGCTC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 263, 1295
EcoT38I GRGCYC 2 cut(s) 474, 957
ErhI CCWWGG 2 cut(s) 263, 1295
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 9 cut(s) 111, 187, 267, 395, 530, 935, 1196, 1201, 1299
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FaqI GGGAC 2 cut(s) 755, 954
FatI CATG 9 cut(s) 107, 183, 263, 391, 526, 931, 1192, 1197, 1295
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 240, 301, 1014, 1189
FokI GGATG 3 cut(s) 738, 881, 1163
FriOI GRGCYC 2 cut(s) 474, 957
Fsp4HI GCNGC 4 cut(s) 240, 301, 1014, 1189
FspBI CTAG 3 cut(s) 279, 369, 1290
GluI GCNGC 4 cut(s) 240, 301, 1014, 1189
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 716, 1191
Hin1II CATG 9 cut(s) 111, 187, 267, 395, 530, 935, 1196, 1201, 1299
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 3 cut(s) 168, 860, 1178
HphI GGTGA 3 cut(s) 415, 671, 1181
Hpy166II GTNNAC 4 cut(s) 57, 331, 1092, 1207
Hpy188I TCNGA 4 cut(s) 130, 454, 553, 868
Hpy188III TCNNGA 9 cut(s) 67, 353, 609, 668, 748, 809, 827, 947, 1228
Hpy8I GTNNAC 4 cut(s) 57, 331, 1092, 1207
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 7 cut(s) 54, 61, 337, 596, 629, 962, 1052
HpyCH4IV ACGT 1 cut(s) 942
HpyCH4V TGCA 6 cut(s) 227, 564, 584, 617, 710, 985
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 942
Hsp92II CATG 9 cut(s) 111, 187, 267, 395, 530, 935, 1196, 1201, 1299
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
LmnI GCTCC 2 cut(s) 469, 477
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 673
MaeI CTAG 3 cut(s) 279, 369, 1290
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 1 cut(s) 677
MalI GATC 8 cut(s) 48, 158, 232, 463, 770, 807, 1143, 1266
MboI GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
MboII GAAGA 6 cut(s) 201, 329, 770, 988, 1127, 1229
MflI RGATCY 2 cut(s) 46, 805
MhlI GDGCHC 3 cut(s) 80, 474, 957
MluCI AATT 8 cut(s) 143, 496, 701, 986, 1006, 1125, 1235, 1260
MlyI GAGTC 3 cut(s) 162, 869, 1172
MmeI TCCRAC 3 cut(s) 576, 625, 783
MnlI CCTC 8 cut(s) 31, 525, 554, 559, 631, 766, 907, 910
MseI TTAA 3 cut(s) 339, 441, 653
MslI CAYNNNNRTG 2 cut(s) 121, 1202
MspR9I CCNGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 828
MwoI GCNNNNNNNGC 1 cut(s) 309
NcoI CCATGG 2 cut(s) 263, 1295
NdeII GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 9 cut(s) 111, 187, 267, 395, 530, 935, 1196, 1201, 1299
NlaIV GGNNCC 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 677
NruI TCGCGA 1 cut(s) 828
NspI RCATGY 1 cut(s) 187
PaeI GCATGC 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PctI GAATGC 1 cut(s) 617
PflFI GACNNNGTC 1 cut(s) 1223
PflMI CCANNNNNTGG 1 cut(s) 1198
PkrI GCNGC 4 cut(s) 241, 302, 1015, 1190
PleI GAGTC 3 cut(s) 162, 868, 1172
PpsI GAGTC 3 cut(s) 162, 868, 1172
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 2 cut(s) 126, 645
PsuI RGATCY 2 cut(s) 46, 805
PsyI GACNNNGTC 1 cut(s) 1223
RruI TCGCGA 1 cut(s) 828
RsaI GTAC 1 cut(s) 1208
RsaNI GTAC 1 cut(s) 1207
RseI CAYNNNNRTG 2 cut(s) 121, 1202
SacI GAGCTC 1 cut(s) 474
SaqAI TTAA 3 cut(s) 339, 441, 653
SatI GCNGC 4 cut(s) 240, 301, 1014, 1189
Sau3AI GATC 8 cut(s) 46, 156, 230, 461, 768, 805, 1141, 1264
Sau96I GGNCC 2 cut(s) 126, 645
SchI GAGTC 3 cut(s) 162, 869, 1172
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 3 cut(s) 80, 474, 957
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 2 cut(s) 307, 973
SinI GGWCC 2 cut(s) 126, 645
SmiMI CAYNNNNRTG 2 cut(s) 121, 1202
SphI GCATGC 1 cut(s) 187
Sse9I AATT 8 cut(s) 143, 496, 701, 986, 1006, 1125, 1235, 1260
SsiI CCGC 5 cut(s) 301, 889, 1013, 1068, 1188
SspI AATATT 1 cut(s) 674
SspMI CTAG 3 cut(s) 279, 369, 1290
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 2 cut(s) 263, 1295
TaaI ACNGT 7 cut(s) 54, 61, 337, 596, 629, 962, 1052
TaiI ACGT 1 cut(s) 945
TaqI TCGA 2 cut(s) 66, 245
TaqII GACCGA 1 cut(s) 662
TasI AATT 8 cut(s) 143, 496, 701, 986, 1006, 1125, 1235, 1260
TatI WGTACW 1 cut(s) 1206
TauI GCSGC 3 cut(s) 303, 1016, 1191
Tru1I TTAA 3 cut(s) 339, 441, 653
Tru9I TTAA 3 cut(s) 339, 441, 653
TscAI CASTG 2 cut(s) 66, 340
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 2 cut(s) 66, 340
Tth111I GACNNNGTC 1 cut(s) 1223
Van91I CCANNNNNTGG 1 cut(s) 1198
VpaK11BI GGWCC 2 cut(s) 126, 645
XapI RAATTY 2 cut(s) 496, 1006
XceI RCATGY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 2 cut(s) 1251, 1275
XspI CTAG 3 cut(s) 279, 369, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.