Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

54197947 .. 54199270

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCTGATAGTCCTGATCAAGAACTCCATTGTTGCACTAAAAGGAGGAAGGTTACAGGAAGCGGGAACCCAACATTACCAAACTGGTCTGAGCTCCAACCTGAACTGTTAGAGTTGATCTTGGGAAAACTTCCTGCTTTTGTCGATGTTCTTCGTTTTAGATCTGTTTGTCCTGCTTGGAATCTCACTACAAAATCTTATATCTCTAACCCACATCGCTCATCAACATTGCTTCAAACCCCATGGCTCATGGTCCCTAGTGAGCAAGACGACGACGACGATACTCGCTGCTTCTATAACCTTGCAGAGAAAAAAGTTTACATGATTAAGAACATGTTCAAAGCTTTTGATCATGACCCTCGCTGTGTAGGTTCATTACATGGGTGGCTGGTGATTTGGACCCAGAAAGCAATCTTACATCTCTTCAACCCAATTTCTCAAGCTAGAATCGAACTCCCATCAATTACGACTCTTCCCCCCACTGACATCTTATTGGACTTTAACCTTTTTGAGTGTCCCATTGCTAAAGCTGTCCTTTCCACTGACCCGTCTTACAACAAGAACTACTTCATTGTCGTAATGTACACAACAGGAAGAGAAAGTTTAGCATTTTATAAACATGGAGACTATACATGGAATCACTTAGGCTCTCCACATCAAGACTATCGTGATATTATGTTCCATAATAAGCACTTATTTGTATGGTCCTCCAATGAAATGGAAGTTTGGGACTTTGGGGCTGCATATCCGATTAAAATGATGGATTTTCGACTTTCGAGTGAGGAGGACAGAGCTTTATACAAATCTTTTACTCTAAACCGTCGGTGGCGTTTGGTAGAGTCATTTGGTGAGCTTCTGCGTGTGGAGCAGCTGCATAATATTTGTAGAGGCGAGTGGCACTTCTATATTTTCAAGTTAAATTTCTCGTCTAAAAAGTGGGAGAAGATGGAACGCTTGGAAGATCGGGCTTTATGTTTGGGTGATGAGAGTTCGATAATGTCAATATCTACTCGGGATCTTCCAGAATTTGAAGAAAACTCAATTTACTTCATAAATGAAGATAAAGAAGCTCATGAATCTGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

363

Amino Acids

42.51

Weight (kDa)

5.74

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	98 - 356	6.8e-51	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	1023
AcsI	RAATTY	2 cut(s)	919, 1025
AfaI	GTAC	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	5 cut(s)	236, 340, 427, 913, 1031
AluBI	AGCT	8 cut(s)	94, 344, 443, 530, 794, 853, 871, 1070
AluI	AGCT	8 cut(s)	94, 344, 443, 530, 794, 853, 871, 1070
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	1 cut(s)	1023
Ama87I	CYCGRG	1 cut(s)	1011
ApeKI	GCWGC	4 cut(s)	288, 740, 868, 871
ApoI	RAATTY	2 cut(s)	919, 1025
Asp700I	GAANNNNTTC	2 cut(s)	335, 566
AspS9I	GGNCC	3 cut(s)	253, 399, 705
AsuHPI	GGTGA	3 cut(s)	403, 860, 992
AvaI	CYCGRG	1 cut(s)	1011
AvaII	GGWCC	3 cut(s)	253, 399, 705
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	4 cut(s)	275, 727, 858, 880
BccI	CCATC	3 cut(s)	466, 754, 940
BclI	TGATCA	2 cut(s)	16, 349
BcoDI	GTCTC	1 cut(s)	618
BfaI	CTAG	2 cut(s)	258, 444
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	4 cut(s)	289, 741, 869, 872
BlsI	GCNGC	4 cut(s)	290, 742, 870, 873
Bme18I	GGWCC	3 cut(s)	253, 399, 705
BmeT110I	CYCGRG	1 cut(s)	1011
BmgT120I	GGNCC	3 cut(s)	253, 399, 705
BmiI	GGNNCC	3 cut(s)	68, 255, 401
BpuEI	CTTGAG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	2 cut(s)	227, 519
BseDI	CCNNGG	1 cut(s)	242
BseMI	GCAATG	2 cut(s)	227, 519
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	4 cut(s)	275, 727, 858, 880
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	1011
BslFI	GGGAC	3 cut(s)	239, 501, 743
BsmAI	GTCTC	1 cut(s)	618
BsmFI	GGGAC	3 cut(s)	239, 501, 743
BsoBI	CYCGRG	1 cut(s)	1011
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	2 cut(s)	352, 1072
BspLI	GGNNCC	3 cut(s)	68, 255, 401
BspPI	GGATC	1 cut(s)	1023
BsrDI	GCAATG	2 cut(s)	227, 519
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	108, 821
Bst6I	CTCTTC	3 cut(s)	428, 477, 589
BstAUI	TGTACA	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	90, 643
BstDSI	CCRYGG	1 cut(s)	242
BstKTI	GATC	6 cut(s)	19, 120, 164, 352, 964, 1018
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	865
BstNSI	RCATGY	1 cut(s)	337
BstV1I	GCAGC	4 cut(s)	275, 727, 858, 880
BstX2I	RGATCY	2 cut(s)	161, 1015
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	2 cut(s)	161, 1015
BtgI	CCRYGG	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	480, 540
CciI	TCATGA	2 cut(s)	352, 1072
Cfr13I	GGNCC	3 cut(s)	253, 399, 705
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	9 cut(s)	243, 250, 322, 334, 353, 380, 620, 633, 1073
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	2 cut(s)	90, 643
DpnI	GATC	6 cut(s)	18, 119, 163, 351, 963, 1017
DpnII	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
Eam1104I	CTCTTC	3 cut(s)	428, 477, 589
EarI	CTCTTC	3 cut(s)	428, 477, 589
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	253, 399, 705
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	1011
EcoICRI	GAGCTC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	9 cut(s)	246, 253, 325, 337, 356, 383, 623, 636, 1076
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 551, 583
FaqI	GGGAC	3 cut(s)	239, 501, 743
FatI	CATG	9 cut(s)	242, 249, 321, 333, 352, 379, 619, 632, 1072
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	2 cut(s)	16, 349
Fnu4HI	GCNGC	4 cut(s)	289, 741, 869, 872
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	289, 741, 869, 872
FspBI	CTAG	2 cut(s)	258, 444
GluI	GCNGC	4 cut(s)	289, 741, 869, 872
Hin1II	CATG	9 cut(s)	246, 253, 325, 337, 356, 383, 623, 636, 1076
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	6 cut(s)	181, 447, 469, 637, 839, 1076
HphI	GGTGA	3 cut(s)	403, 860, 992
Hpy166II	GTNNAC	2 cut(s)	319, 585
Hpy188I	TCNGA	2 cut(s)	91, 750
Hpy188III	TCNNGA	8 cut(s)	14, 20, 353, 659, 668, 1013, 1022, 1073
Hpy8I	GTNNAC	2 cut(s)	319, 585
Hpy99I	CGWCG	4 cut(s)	275, 278, 281, 825
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	108, 821
HpyCH4V	TGCA	4 cut(s)	36, 305, 743, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	865
HpyF3I	CTNAG	2 cut(s)	90, 643
Hsp92II	CATG	9 cut(s)	246, 253, 325, 337, 356, 383, 623, 636, 1076
Ksp22I	TGATCA	2 cut(s)	16, 349
Kzo9I	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
LmnI	GCTCC	2 cut(s)	99, 865
Lsp1109I	GCAGC	4 cut(s)	275, 727, 858, 880
MaeI	CTAG	2 cut(s)	258, 444
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	6 cut(s)	18, 119, 163, 351, 963, 1017
MboI	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
MboII	GAAGA	9 cut(s)	143, 415, 464, 606, 955, 971, 1010, 1043, 1070
MflI	RGATCY	2 cut(s)	161, 1015
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	5 cut(s)	432, 462, 919, 1025, 1041
MlyI	GAGTC	2 cut(s)	463, 848
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	6 cut(s)	39, 369, 718, 775, 778, 881
MroXI	GAANNNNTTC	2 cut(s)	335, 566
MseI	TTAA	4 cut(s)	327, 501, 753, 917
MspA1I	CMGCKG	1 cut(s)	871
MwoI	GCNNNNNNNGC	1 cut(s)	865
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
NlaIII	CATG	9 cut(s)	246, 253, 325, 337, 356, 383, 623, 636, 1076
NlaIV	GGNNCC	3 cut(s)	68, 255, 401
NspI	RCATGY	1 cut(s)	337
PagI	TCATGA	2 cut(s)	352, 1072
PciI	ACATGT	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdmI	GAANNNNTTC	2 cut(s)	335, 566
PfeI	GAWTC	4 cut(s)	181, 447, 637, 1076
PkrI	GCNGC	4 cut(s)	290, 742, 870, 873
PleI	GAGTC	2 cut(s)	463, 847
PpsI	GAGTC	2 cut(s)	463, 847
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	68, 255, 401
PspPI	GGNCC	3 cut(s)	253, 399, 705
PsuI	RGATCY	2 cut(s)	161, 1015
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	4 cut(s)	327, 501, 753, 917
SatI	GCNGC	4 cut(s)	289, 741, 869, 872
Sau3AI	GATC	6 cut(s)	16, 117, 161, 349, 961, 1015
Sau96I	GGNCC	3 cut(s)	253, 399, 705
SchI	GAGTC	2 cut(s)	463, 848
SduI	GDGCHC	1 cut(s)	96
SinI	GGWCC	3 cut(s)	253, 399, 705
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
Sse9I	AATT	5 cut(s)	432, 462, 919, 1025, 1041
SsiI	CCGC	1 cut(s)	63
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	2 cut(s)	258, 444
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	108, 821
TaqI	TCGA	5 cut(s)	144, 450, 769, 776, 992
TasI	AATT	5 cut(s)	432, 462, 919, 1025, 1041
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	4 cut(s)	181, 447, 637, 1076
Tru1I	TTAA	4 cut(s)	327, 501, 753, 917
Tru9I	TTAA	4 cut(s)	327, 501, 753, 917
TscAI	CASTG	2 cut(s)	487, 547
TseI	GCWGC	4 cut(s)	288, 740, 868, 871
TspDTI	ATGAA	6 cut(s)	363, 559, 729, 1039, 1071, 1089
TspRI	CASTG	2 cut(s)	487, 547
VpaK11BI	GGWCC	3 cut(s)	253, 399, 705
XapI	RAATTY	2 cut(s)	919, 1025
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	2 cut(s)	335, 566
XspI	CTAG	2 cut(s)	258, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.