Rroxscaffold_1G00007830

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
9985080 .. 9997104
12025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007830.1

Sequence Viewer

Length: 405 bp
ATGTTAGTACTTGATAGAACGAAGAAATTGATCTATGGGGACAGAGAATCCAAGATCGATTTCTTCCTTAATCGGAACTCCATAGTTTACGTAATTCAATGCTACTATGATATCTGTAAGTTAAACTTCACTCCCAACAAGGTGGAATGTTTGAAGTTGGAATGTCTGCAAGAGCGGGCTTTGGCTTTGAGTGCATACGAATCAGCATCGATATCATTATCCACCCTGGATTTTCCAGAACTTGAAGCAAACTCAATTTATGTTGCCAATGAAGAAAATGTTCTTCAAGGTGGTCATCATAAGCTATATTGGAAAGAAGAAGCATACAATTGGAAAATAAAGGCTTCAAGTCTTATGTTACATCCCAATGATGTTCGGTACACTTGTAGACATCAGTTCCCATGA

Protein Analysis

134

Amino Acids

15.72

Weight (kDa)

6.41

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 388
AciI CCGC 1 cut(s) 175
AfaI GTAC 2 cut(s) 9, 380
AgsI TTSAA 5 cut(s) 98, 154, 245, 287, 348
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 279
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
BciT130I CCWGG 1 cut(s) 227
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 215
Bsa29I ATCGAT 2 cut(s) 57, 209
BsaAI YACGTR 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 2 cut(s) 57, 209
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 361
BshVI ATCGAT 2 cut(s) 57, 209
BslFI GGGAC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 30, 54
BspACI CCGC 1 cut(s) 175
BspDI ATCGAT 2 cut(s) 57, 209
BsrBI CCGCTC 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 30, 54
Bst2UI CCWGG 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 2 cut(s) 33, 57
BstMBI GATC 2 cut(s) 30, 54
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSNI TACGTA 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 142
Bsu15I ATCGAT 2 cut(s) 57, 209
BsuTUI ATCGAT 2 cut(s) 57, 209
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 177
ClaI ATCGAT 2 cut(s) 57, 209
Csp6I GTAC 2 cut(s) 8, 379
CviAII CATG 1 cut(s) 402
CviJI RGCY 4 cut(s) 179, 185, 304, 344
CviKI_1 RGCY 4 cut(s) 179, 185, 304, 344
CviQI GTAC 2 cut(s) 8, 379
DpnI GATC 2 cut(s) 32, 56
DpnII GATC 2 cut(s) 30, 54
Eco105I TACGTA 1 cut(s) 91
Eco32I GATATC 2 cut(s) 112, 213
EcoRII CCWGG 1 cut(s) 225
EcoRV GATATC 2 cut(s) 112, 213
FaeI CATG 1 cut(s) 405
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 401
FauI CCCGC 1 cut(s) 168
FblI GTMKAC 1 cut(s) 388
FokI GGATG 1 cut(s) 348
Hin1II CATG 1 cut(s) 405
HinfI GANTC 2 cut(s) 47, 200
Hpy166II GTNNAC 3 cut(s) 88, 381, 389
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 3 cut(s) 88, 381, 389
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 169, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 405
Kzo9I GATC 2 cut(s) 30, 54
LpnPI CCDG 3 cut(s) 212, 239, 249
LweI GCATC 1 cut(s) 215
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 32, 56
MbiI CCGCTC 1 cut(s) 175
MboI GATC 2 cut(s) 30, 54
MboII GAAGA 5 cut(s) 34, 55, 275, 284, 329
MfeI CAATTG 1 cut(s) 328
MluCI AATT 4 cut(s) 26, 93, 255, 328
MmeI TCCRAC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 2 cut(s) 69, 122
MslI CAYNNNNRTG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 30, 54
NlaIII CATG 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 47, 200
Ppu21I YACGTR 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
RsaI GTAC 2 cut(s) 9, 380
RsaNI GTAC 2 cut(s) 8, 379
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 2 cut(s) 69, 122
Sau3AI GATC 2 cut(s) 30, 54
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 227
SetI ASST 4 cut(s) 93, 144, 292, 306
SfaNI GCATC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 366
SnaBI TACGTA 1 cut(s) 91
Sse9I AATT 4 cut(s) 26, 93, 255, 328
SsiI CCGC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 57, 209
TasI AATT 4 cut(s) 26, 93, 255, 328
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 2 cut(s) 47, 200
Tru1I TTAA 2 cut(s) 69, 122
Tru9I TTAA 2 cut(s) 69, 122
TspDTI ATGAA 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.