FvH4_7g10560

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
9929825 .. 9931429
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10560.t1

Sequence Viewer

Length: 1338 bp
ATGTTTTCATCATATGACGACGACATGAGAAGGAAGAGAGGTCCTATACGATCAAGGTGGTCCGACCTCCCTCCTGAACTACTCGAGTTGATCATGAAAAAGCTTGCTTCAGTAGACATCCTTCGCTTCGAAGCTGTCTGTTCTCGTTGGTGTAAGACTGCAAAGTCTTATATCTCATCCCCATATTTCACACTCGACATGCCTCAAACCCCATGGCTTATGATTCCTGGTGGTGAAGGAAACCACATCCACACTCGTCGCTTTTTCAACCTCTCAGAGTTCAAGTACTACACTATCAAAAACACGTTTGGATATATGCCTGATGCATGTTGTATCGGTTCATCACACGGGTGGCTGGTCCTTACGGATGAGAAAGCGAGACCTGCTCGTCTTTTGAATCCGTTTTCTGGAGATAGGATTGACCTTCCCTCAATAGGGTGGAGGAGCACAATTTTTCTAGGCATGAGCAGAGATGATGTCGTTAAAGTTGTCACCTCCTCCAAGCCACCATCGGAAGAGGACTTTGGTGTTGTTGTTGTTGTTGTAATATTAAACTCTACGACTATCGGGTTATCACAACTTGCTTGCTATAGGCATGGACACGATGAGGGATGGACTAACATAAGTACGGTAGTATCCTATGCCTATCACGACGGTATATTCCACAGTACAAATGGTAATTTGTATGCATTGGCAACCGATGGCTCAGTTGAGGTTTGGGACATGAGGCAGTGTTCTCCCATAACAACACTTCATCTGCAACCTTTGTCACACCAACTAGACATTGATCTCAAATTATTAATACCGTGTACGGATTCCATGTTTTATTTGGTGGAGTCCTTGGGTGAACTTTTGTTGGTGAGACGATTTATAAGGAAGACGACGGACCATCCCGGTTACCCCTATAGAACCGTACACTTCAGTATCTATAGGCTTAAGTCCATTAGCAAAGGGTTCGAGTGGGAGAAGGTGGAAAGTTTGCACAATCAGTCTCTCTTTCTGGGAGGAAATCATTCAATCTCTTTGTCTTGCCACAGCTTGCCAGAGTGTGAAGAGAACTCAATTTACTTCACGGATGATAGGTGGTGGGAAATGAACAAGAATGGTAAGTATGGAGTTGGCAATATCGGGGGTCATGATCTTGGAGTATACAACATAAAAGATGATATTGTGAAGCCAATGCCGTGTTATATGAGATTTGATCGCTCTAGTATCAATCCACCGCCCTTTTGGATTGTTCCTGACATAATCCATGGAAGCTATAGTTTAAGAAACGAGATTATCCAATTCACAAGATGTGCTTCACTGGGGAAACGAGATTATTGGCGCAATTGCTAA

Protein Analysis

446

Amino Acids

51.09

Weight (kDa)

6.96

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 56 8.9e-07 F-box domain
F-box-like PF12937 20 - 54 2.4e-06 F-box-like
Beta-prop_KIB1-4 PF03478 88 - 385 5.9e-51 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 872
AasI GACNNNNNNGTC 2 cut(s) 163, 387
Acc36I ACCTGC 1 cut(s) 391
AccI GTMKAC 2 cut(s) 114, 1149
AciI CCGC 1 cut(s) 1223
AcuI CTGAAG 2 cut(s) 93, 904
AfaI GTAC 5 cut(s) 287, 628, 670, 811, 915
AfiI CCNNNNNNNGG 3 cut(s) 407, 434, 435
AflII CTTAAG 1 cut(s) 935
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 4 cut(s) 268, 283, 397, 1017
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AleI CACNNNNGTG 1 cut(s) 349
AluBI AGCT 4 cut(s) 103, 134, 1038, 1260
AluI AGCT 4 cut(s) 103, 134, 1038, 1260
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 3 cut(s) 373, 856, 996
Ama87I CYCGRG 1 cut(s) 83
AseI ATTAAT 1 cut(s) 800
Asp700I GAANNNNTTC 1 cut(s) 1012
AspLEI GCGC 1 cut(s) 1329
AspS9I GGNCC 4 cut(s) 41, 60, 358, 886
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 4 cut(s) 245, 484, 857, 871
AsuII TTCGAA 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 4 cut(s) 41, 60, 358, 886
BaeI ACNNNNGTAYC 4 cut(s) 618, 651, 907, 940
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 1 cut(s) 449
BccI CCATC 4 cut(s) 517, 606, 695, 897
BceAI ACGGC 1 cut(s) 1168
BcgI CGANNNNNNTGC 2 cut(s) 937, 971
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 646
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 3 cut(s) 373, 856, 996
BfaI CTAG 3 cut(s) 458, 779, 1209
BfmI CTRYAG 4 cut(s) 589, 904, 928, 1261
BfrI CTTAAG 1 cut(s) 935
BfuAI ACCTGC 1 cut(s) 391
BfuI GTATCC 1 cut(s) 646
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 228, 894
Bme18I GGWCC 4 cut(s) 41, 60, 358, 886
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 4 cut(s) 41, 60, 358, 886
BmrFI CCNGG 2 cut(s) 228, 894
BmrI ACTGGG 1 cut(s) 1316
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 1316
BpiI GAAGAC 1 cut(s) 884
BplI GAGNNNNNCTC 2 cut(s) 370, 402
BpmI CTGGAG 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 894
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 3 cut(s) 212, 840, 1252
Bsc4I CCNNNNNNNGG 3 cut(s) 407, 434, 435
Bse1I ACTGG 1 cut(s) 1311
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 212, 840, 1252
BseGI GGATG 7 cut(s) 117, 176, 246, 373, 617, 889, 1081
BseLI CCNNNNNNNGG 3 cut(s) 407, 434, 435
BseMII CTCAG 2 cut(s) 288, 720
BseNI ACTGG 1 cut(s) 1311
BseRI GAGGAG 2 cut(s) 457, 487
BsiHKAI GWGCWC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 894
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 3 cut(s) 407, 434, 435
BsmAI GTCTC 3 cut(s) 373, 856, 996
BsmBI CGTCTC 1 cut(s) 856
BsmFI GGGAC 1 cut(s) 734
Bso31I GGTCTC 1 cut(s) 373
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 5 cut(s) 50, 90, 787, 1138, 1201
Bsp19I CCATGG 2 cut(s) 212, 1252
BspACI CCGC 1 cut(s) 1223
BspCNI CTCAG 2 cut(s) 287, 719
BspHI TCATGA 2 cut(s) 93, 1135
BspMI ACCTGC 1 cut(s) 391
BspT104I TTCGAA 1 cut(s) 129
BspTI CTTAAG 1 cut(s) 935
BspTNI GGTCTC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 1311
BssECI CCNNGG 3 cut(s) 212, 840, 1252
BssMI GATC 5 cut(s) 50, 90, 787, 1138, 1201
BssNAI GTATAC 1 cut(s) 1150
BssT1I CCWWGG 3 cut(s) 212, 840, 1252
Bst1107I GTATAC 1 cut(s) 1150
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 5 cut(s) 631, 656, 668, 807, 913
Bst6I CTCTTC 3 cut(s) 29, 510, 1047
BstAFI CTTAAG 1 cut(s) 935
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 105, 586, 1040
BstDEI CTNAG 2 cut(s) 274, 706
BstDSI CCRYGG 2 cut(s) 212, 1252
BstEII GGTNACC 1 cut(s) 896
BstF5I GGATG 7 cut(s) 117, 176, 246, 373, 617, 889, 1081
BstHHI GCGC 1 cut(s) 1329
BstKTI GATC 5 cut(s) 53, 93, 790, 1141, 1204
BstMAI GTCTC 3 cut(s) 373, 856, 996
BstMBI GATC 5 cut(s) 50, 90, 787, 1138, 1201
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 2 cut(s) 202, 330
BstPI GGTNACC 1 cut(s) 896
BstSCI CCNGG 2 cut(s) 226, 892
BstSFI CTRYAG 4 cut(s) 589, 904, 928, 1261
BstV2I GAAGAC 1 cut(s) 884
BstZ17I GTATAC 1 cut(s) 1150
BsuI GTATCC 1 cut(s) 646
BtgI CCRYGG 2 cut(s) 212, 1252
BtsCI GGATG 7 cut(s) 117, 176, 246, 373, 617, 889, 1081
BtsI GCAGTG 1 cut(s) 737
BtsIMutI CAGTG 2 cut(s) 737, 1304
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 3 cut(s) 105, 586, 1040
CciI TCATGA 2 cut(s) 93, 1135
CfoI GCGC 1 cut(s) 1329
Cfr13I GGNCC 4 cut(s) 41, 60, 358, 886
Csp6I GTAC 5 cut(s) 286, 627, 669, 810, 914
CviQI GTAC 5 cut(s) 286, 627, 669, 810, 914
DdeI CTNAG 2 cut(s) 274, 706
DpnI GATC 5 cut(s) 52, 92, 789, 1140, 1203
DpnII GATC 5 cut(s) 50, 90, 787, 1138, 1201
DrdI GACNNNNNNGTC 2 cut(s) 163, 387
DseDI GACNNNNNNGTC 2 cut(s) 163, 387
Eam1104I CTCTTC 3 cut(s) 29, 510, 1047
EarI CTCTTC 3 cut(s) 29, 510, 1047
Eco130I CCWWGG 3 cut(s) 212, 840, 1252
Eco31I GGTCTC 1 cut(s) 373
Eco47I GGWCC 4 cut(s) 41, 60, 358, 886
Eco57I CTGAAG 2 cut(s) 93, 904
Eco88I CYCGRG 1 cut(s) 83
Eco91I GGTNACC 1 cut(s) 896
EcoO109I RGGNCCY 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 896
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 212, 840, 1252
EcoT22I ATGCAT 2 cut(s) 328, 691
ErhI CCWWGG 3 cut(s) 212, 840, 1252
Esp3I CGTCTC 1 cut(s) 856
FalI AAGNNNNNCTT 2 cut(s) 1285, 1317
FaqI GGGAC 1 cut(s) 734
FauNDI CATATG 1 cut(s) 13
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 2 cut(s) 114, 1149
FokI GGATG 7 cut(s) 104, 163, 233, 380, 624, 876, 1088
FspBI CTAG 3 cut(s) 458, 779, 1209
GlaI GCGC 1 cut(s) 1328
GsuI CTGGAG 1 cut(s) 429
HapII CCGG 1 cut(s) 894
HhaI GCGC 1 cut(s) 1329
Hin6I GCGC 1 cut(s) 1327
HinP1I GCGC 1 cut(s) 1327
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 4 cut(s) 223, 397, 815, 836
HpaII CCGG 1 cut(s) 894
HphI GGTGA 4 cut(s) 245, 484, 857, 871
Hpy166II GTNNAC 5 cut(s) 115, 810, 848, 916, 1150
Hpy188I TCNGA 3 cut(s) 64, 277, 514
Hpy188III TCNNGA 6 cut(s) 74, 94, 408, 650, 1136, 1241
Hpy8I GTNNAC 5 cut(s) 115, 810, 848, 916, 1150
Hpy99I CGWCG 4 cut(s) 23, 261, 656, 886
HpyAV CCTTC 5 cut(s) 24, 131, 230, 434, 961
HpyCH4III ACNGT 5 cut(s) 631, 656, 668, 807, 913
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 5 cut(s) 161, 326, 689, 760, 982
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 274, 706
HpySE526I ACGT 1 cut(s) 305
HspAI GCGC 1 cut(s) 1327
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 50, 90, 787, 1138, 1201
LmnI GCTCC 1 cut(s) 444
LweI GCATC 1 cut(s) 313
MaeI CTAG 3 cut(s) 458, 779, 1209
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 3 cut(s) 490, 768, 896
MalI GATC 5 cut(s) 52, 92, 789, 1140, 1203
MboI GATC 5 cut(s) 50, 90, 787, 1138, 1201
MboII GAAGA 4 cut(s) 46, 527, 889, 1064
MfeI CAATTG 1 cut(s) 1330
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 6 cut(s) 450, 679, 794, 1062, 1286, 1330
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 1 cut(s) 87
Mph1103I ATGCAT 2 cut(s) 328, 691
MroXI GAANNNNTTC 1 cut(s) 1012
MseI TTAA 5 cut(s) 483, 551, 800, 936, 1268
MslI CAYNNNNRTG 1 cut(s) 349
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 2 cut(s) 228, 894
MunI CAATTG 1 cut(s) 1330
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 1 cut(s) 894
NcoI CCATGG 2 cut(s) 212, 1252
NdeI CATATG 1 cut(s) 13
NdeII GATC 5 cut(s) 50, 90, 787, 1138, 1201
NmuCI GTSAC 2 cut(s) 490, 768
NsiI ATGCAT 2 cut(s) 328, 691
NspI RCATGY 2 cut(s) 202, 330
NspV TTCGAA 1 cut(s) 129
OliI CACNNNNGTG 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 2 cut(s) 93, 1135
PdmI GAANNNNTTC 1 cut(s) 1012
PfeI GAWTC 3 cut(s) 223, 397, 815
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
PpuMI RGGWCCY 1 cut(s) 41
PshBI ATTAAT 1 cut(s) 800
PsiI TTATAA 1 cut(s) 872
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 896
PspGI CCWGG 1 cut(s) 226
PspPI GGNCC 4 cut(s) 41, 60, 358, 886
PspPPI RGGWCCY 1 cut(s) 41
PspXI VCTCGAGB 1 cut(s) 83
PsrI GAACNNNNNNTAC 2 cut(s) 1049, 1081
RsaI GTAC 5 cut(s) 287, 628, 670, 811, 915
RsaNI GTAC 5 cut(s) 286, 627, 669, 810, 914
RseI CAYNNNNRTG 1 cut(s) 349
SaqAI TTAA 5 cut(s) 483, 551, 800, 936, 1268
Sau3AI GATC 5 cut(s) 50, 90, 787, 1138, 1201
Sau96I GGNCC 4 cut(s) 41, 60, 358, 886
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 228, 894
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 4 cut(s) 589, 904, 928, 1261
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 129
SinI GGWCC 4 cut(s) 41, 60, 358, 886
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 349
SmlI CTYRAG 2 cut(s) 83, 935
SmoI CTYRAG 2 cut(s) 83, 935
Sse9I AATT 6 cut(s) 450, 679, 794, 1062, 1286, 1330
SsiI CCGC 1 cut(s) 1223
SspI AATATT 1 cut(s) 549
SspMI CTAG 3 cut(s) 458, 779, 1209
StyD4I CCNGG 2 cut(s) 226, 892
StyI CCWWGG 3 cut(s) 212, 840, 1252
TaaI ACNGT 5 cut(s) 631, 656, 668, 807, 913
TaiI ACGT 1 cut(s) 308
TaqI TCGA 4 cut(s) 84, 129, 195, 957
TasI AATT 6 cut(s) 450, 679, 794, 1062, 1286, 1330
TatI WGTACW 2 cut(s) 285, 668
TfiI GAWTC 3 cut(s) 223, 397, 815
Tru1I TTAA 5 cut(s) 483, 551, 800, 936, 1268
Tru9I TTAA 5 cut(s) 483, 551, 800, 936, 1268
TscAI CASTG 2 cut(s) 737, 1311
TseFI GTSAC 2 cut(s) 490, 768
Tsp45I GTSAC 2 cut(s) 490, 768
TspDTI ATGAA 4 cut(s) 110, 330, 743, 1109
TspGWI ACGGA 5 cut(s) 380, 390, 827, 899, 1088
TspRI CASTG 2 cut(s) 737, 1311
Vha464I CTTAAG 1 cut(s) 935
VpaK11BI GGWCC 4 cut(s) 41, 60, 358, 886
VspI ATTAAT 1 cut(s) 800
XceI RCATGY 2 cut(s) 202, 330
XcmI CCANNNNNNNNNTGG 3 cut(s) 671, 826, 1227
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 2 cut(s) 114, 1149
XmnI GAANNNNTTC 1 cut(s) 1012
XspI CTAG 3 cut(s) 458, 779, 1209
ZrmI AGTACT 1 cut(s) 287
Zsp2I ATGCAT 2 cut(s) 328, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.