Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

58592763 .. 58593137

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG324200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCCGAAATTGGCACCAACAAGCCTCACAGAGAAAAAGTTTCATAAGATCAAGACCTCTTTTGAAGGCTTTGATTATCCTCACGTAACATATGTGGGTTCCTCACATGGATGGCTTGCGATTTGCGACCTCAGTAAGGCAATGGTTTATCTTCTCAATCCGGTTTCGGGGTCTAGAATCGATCTCCCATCGATTTCGACTCTTCCTAACATTGTTGAAGGATGCAATCCCAGAGTTTTCCGAGTTGTGCCCTCCTCCGACCCGTCTCGCAACAAGAAAGTTTTCATTGTGGTGAAGTACGTTAGTAGAATATTGTCTCCTCACAGTAAACTAGCTTTTGTAAGAATGGAGATGAAAAATGGACCTACTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

124

Amino Acids

13.9

Weight (kDa)

9.81

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	8 - 116	3.9e-16	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	136, 167
AgsI	TTSAA	2 cut(s)	65, 218
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	270, 321
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	13
BccI	CCATC	2 cut(s)	105, 196
BcoDI	GTCTC	2 cut(s)	270, 321
BfaI	CTAG	2 cut(s)	174, 332
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	15, 100
BmsI	GCATC	1 cut(s)	212
Bsa29I	ATCGAT	2 cut(s)	180, 191
BsaAI	YACGTR	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 167
Bse3DI	GCAATG	1 cut(s)	147
BseCI	ATCGAT	2 cut(s)	180, 191
BseGI	GGATG	2 cut(s)	116, 227
BseLI	CCNNNNNNNGG	2 cut(s)	136, 167
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	244, 309
BseSI	GKGCMC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	13
BshVI	ATCGAT	2 cut(s)	180, 191
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	136, 167
BsmAI	GTCTC	2 cut(s)	270, 321
BsmBI	CGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	48, 181
BspCNI	CTCAG	1 cut(s)	144
BspDI	ATCGAT	2 cut(s)	180, 191
BspLI	GGNNCC	2 cut(s)	15, 100
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	147
BssMI	GATC	2 cut(s)	48, 181
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	131
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	116, 227
BstKTI	GATC	2 cut(s)	51, 184
BstMAI	GTCTC	2 cut(s)	270, 321
BstMBI	GATC	2 cut(s)	48, 181
BstSLI	GKGCMC	1 cut(s)	252
Bsu15I	ATCGAT	2 cut(s)	180, 191
BsuTUI	ATCGAT	2 cut(s)	180, 191
BtsCI	GGATG	2 cut(s)	116, 227
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	2 cut(s)	180, 191
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	4 cut(s)	24, 69, 115, 335
CviKI_1	RGCY	4 cut(s)	24, 69, 115, 335
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	50, 183
DpnII	GATC	2 cut(s)	48, 181
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	110
FaiI	YATR	4 cut(s)	45, 91, 93, 108
FatI	CATG	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	91
FokI	GGATG	2 cut(s)	123, 234
FspBI	CTAG	2 cut(s)	174, 332
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	2 cut(s)	177, 199
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	242, 259
Hpy188III	TCNNGA	2 cut(s)	52, 174
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	59, 212
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	84, 300
HpyCH4V	TGCA	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	84, 300
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	48, 181
LpnPI	CCDG	2 cut(s)	174, 244
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	174, 332
MaeII	ACGT	2 cut(s)	84, 300
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	50, 183
MboI	GATC	2 cut(s)	48, 181
MboII	GAAGA	2 cut(s)	143, 194
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	35, 67, 90, 112, 140, 262, 265, 330
MroXI	GAANNNNTTC	1 cut(s)	281
MslI	CAYNNNNRTG	2 cut(s)	109, 290
MspI	CCGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	48, 181
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	15, 100
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	15, 100
PspPI	GGNCC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	2 cut(s)	109, 290
Sau3AI	GATC	2 cut(s)	48, 181
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	6 cut(s)	59, 87, 132, 303, 337, 367
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	109, 290
Sse9I	AATT	1 cut(s)	8
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	174, 332
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	87, 303
TaqI	TCGA	3 cut(s)	180, 191, 197
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	177
TspDTI	ATGAA	3 cut(s)	32, 274, 368
VpaK11BI	GGWCC	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	2 cut(s)	174, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.