Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

6814454 .. 6814882

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTGATACAAAACTCTTTATCCTTGCACCAAAAGGAGGGGACCATTGCACCAACGAGACGACTAGTACTACTAGAACGTCTCTACCAAACAGTAATAAGTGGCCTGAGCTCCAACTTGAACTGTCCGAGTTGATCTTGAAAATCCTTGATTCAACTAATTTCGTCGATGTCCATCGCTTTAAAGCTGTTTGTACATCTTGGGAAACCGCTGCAAAGTTATATGCCTCTGCAGCCGTGGCGTTGGCGTTGCCTCCACAATCCCCATGGCTGATGCACCGTGGCCACGAAGAGGTACTAGTAGTACTACTGATCAGTTCTGCATCTTTAGCCTTGCGGAGAAAGGTTTACACGATGAAGAAAGTGTTTGAAGGCTTTGAATGCGCTCAATGGTGTGAGTTCATCGCAGGGGTGGCTGGTGGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

143

Amino Acids

15.68

Weight (kDa)

6.89

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	210, 337
AcoI	YGGCCR	1 cut(s)	283
AfaI	GTAC	4 cut(s)	70, 196, 297, 306
AfiI	CCNNNNNNNGG	2 cut(s)	38, 292
AgsI	TTSAA	5 cut(s)	122, 142, 156, 371, 380
AhlI	ACTAGT	2 cut(s)	65, 298
AluBI	AGCT	2 cut(s)	112, 188
AluI	AGCT	2 cut(s)	112, 188
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	53, 87
AoxI	GGCC	2 cut(s)	104, 283
ApeKI	GCWGC	2 cut(s)	212, 233
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	199, 245
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	53, 87
BcuI	ACTAGT	2 cut(s)	65, 298
BfaI	CTAG	3 cut(s)	66, 75, 299
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	213, 234
BlsI	GCNGC	2 cut(s)	214, 235
BmcAI	AGTACT	2 cut(s)	70, 306
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	44
BmsI	GCATC	2 cut(s)	264, 332
Bpu10I	CCTNAGC	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	237, 266, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 292
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	237, 266, 280
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	38, 292
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	199, 245
BshFI	GGCC	2 cut(s)	106, 285
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	38, 292
BsmAI	GTCTC	2 cut(s)	53, 87
BsmBI	CGTCTC	2 cut(s)	53, 87
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	106, 285
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	135, 312
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	2 cut(s)	210, 337
BspANI	GGCC	2 cut(s)	106, 285
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	237, 266, 280
BssMI	GATC	2 cut(s)	135, 312
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	95, 126, 281
Bst6I	CTCTTC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	3 cut(s)	237, 266, 280
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	2 cut(s)	138, 315
BstMAI	GTCTC	2 cut(s)	53, 87
BstMBI	GATC	2 cut(s)	135, 312
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 239, 329, 381, 413
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	199, 245
BsuRI	GGCC	2 cut(s)	106, 285
BtgI	CCRYGG	3 cut(s)	237, 266, 280
BtgZI	GCGATG	2 cut(s)	161, 388
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	4 cut(s)	69, 195, 296, 305
CviAII	CATG	1 cut(s)	267
CviQI	GTAC	4 cut(s)	69, 195, 296, 305
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	137, 314
DpnII	GATC	2 cut(s)	135, 312
DraI	TTTAAA	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	2 cut(s)	53, 87
FaeI	CATG	1 cut(s)	270
FaiI	YATR	3 cut(s)	223, 225, 268
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	213, 234
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	213, 234
FspBI	CTAG	3 cut(s)	66, 75, 299
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	2 cut(s)	213, 234
HaeIII	GGCC	2 cut(s)	106, 285
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	3 cut(s)	95, 126, 281
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	6 cut(s)	29, 51, 215, 233, 277, 323
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 239, 329, 381, 413
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	135, 312
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	3 cut(s)	120, 393, 402
Lsp1109I	GCAGC	2 cut(s)	199, 245
LweI	GCATC	2 cut(s)	264, 332
MaeI	CTAG	3 cut(s)	66, 75, 299
MaeII	ACGT	1 cut(s)	80
MalI	GATC	2 cut(s)	137, 314
MboI	GATC	2 cut(s)	135, 312
MboII	GAAGA	2 cut(s)	302, 370
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	32, 238, 264, 286
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	386
MwoI	GCNNNNNNNGC	5 cut(s)	233, 239, 329, 381, 413
NcoI	CCATGG	1 cut(s)	266
NdeII	GATC	2 cut(s)	135, 312
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	214, 235
Psp124BI	GAGCTC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	235
RsaI	GTAC	4 cut(s)	70, 196, 297, 306
RsaNI	GTAC	4 cut(s)	69, 195, 296, 305
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	213, 234
Sau3AI	GATC	2 cut(s)	135, 312
Sau96I	GGNCC	1 cut(s)	43
ScaI	AGTACT	2 cut(s)	70, 306
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	83, 114, 190, 297, 348
SfaNI	GCATC	2 cut(s)	264, 332
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	43
SpeI	ACTAGT	2 cut(s)	65, 298
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	210, 337
SspMI	CTAG	3 cut(s)	66, 75, 299
SstI	GAGCTC	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	3 cut(s)	95, 126, 281
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	168
TasI	AATT	1 cut(s)	160
TatI	WGTACW	3 cut(s)	68, 194, 304
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	2 cut(s)	212, 233
TspDTI	ATGAA	2 cut(s)	371, 391
VpaK11BI	GGWCC	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XspI	CTAG	3 cut(s)	66, 75, 299
ZrmI	AGTACT	2 cut(s)	70, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.