Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

26486991 .. 26488108

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G285500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAATCCTACTTTTTGGGTTCTGCTTCGGGGCCCCAAACACCATGGCTCATGCTCCTTTCTATCCAACAAAACAGGACTCATAACTACAACGACACCACTCGCTGCTTTTATAGTTTCCAAGAGAAAAAACTTTACACCATCGAGGGTGCGTTTCAAGACTTTGACAATGCTTGGTGTGTGGGTTCATCACACGGCTGGCTGGTGATTTTGGACAAAAGAGCAAACCCGCATCTCTTGAATCCAATTTCTGGACGCAGAATTCAACTCCCGCTGTTTTGGCCTGTTGATCGCTCAATTGACGAAAACCTGCGCAAGACTTATATTGCCACGGCCATCCTTTCCTCTGCCCCCTCTGGCAACTACAACAATTTTGTTGTAGCGATCATCTACGGCAGGCTTCTAGACCTACCAGCACCATTGGAACTTGCATTCTGTAAGTACGGGGGGACATGGACTAGCTTGGAGGGCAAGCATAGAGCATATAGTGATATTATATTCCACAATAACCAGCTAATTGCATTTGCTGAACATGGCTCGGTTGAAGTTTGGGACTTCAAGAACACCTCTTTTCCCATCAGAACCATCAATCTCCGTCGACCTTCCTTAGGTTCTTTGCAAGACCGCTCGAATATTTTGAAGTTTCGCAGCTGGGAATTTTCTACTCGGACTTATTTGGTGGAGTCATTGGGTGATATTTTGTTCGTGGGGCGAGTCAAAGGGAACTTTCTTGATCGTCAAGGCAGAGATGTTGATCCGTTGAGCCCGGGTGATGAGGATTGTTTTCCGTACAGAACAATGCAGTTTTATATCTTTAAGTTGAATTTGAGTGCCAAAAAGTGGGAGAAAGTGGAATGTTTGCCTGATCGGGCATTGTTTTTGGGTGGAAACCAGTCGATATCATTATCCACCATTGATTTCCCAGAGTTTGAAGCAAACTCAATCTACTTCACAGATGACAAGTGGGATGAGATCAGTTTTAAGTTCCACGGTTTTGCTAATGATTATGTTGTGAAGCCGTTTGATCAATTTGGTAAGTGGAGAATCGACCCACCACCCTTTTGGATTGTTCCTAATCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

362

Amino Acids

41.8

Weight (kDa)

6.4

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	318
AccB7I	CCANNNNNTGG	2 cut(s)	251, 840
AccBSI	CCGCTC	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	598
AciI	CCGC	3 cut(s)	230, 272, 625
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	3 cut(s)	261, 656, 823
AfaI	GTAC	2 cut(s)	443, 791
AfiI	CCNNNNNNNGG	3 cut(s)	251, 608, 840
AgsI	TTSAA	8 cut(s)	158, 241, 266, 545, 559, 640, 823, 932
AluBI	AGCT	3 cut(s)	462, 514, 651
AluI	AGCT	3 cut(s)	462, 514, 651
AlwI	GGATC	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	766
AoxI	GGCC	3 cut(s)	32, 281, 333
ApaI	GGGCCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	105, 648
ApoI	RAATTY	3 cut(s)	261, 656, 823
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	32, 33
AsuC2I	CCSGG	2 cut(s)	767, 768
AsuHPI	GGTGA	3 cut(s)	217, 704, 782
AvaI	CYCGRG	1 cut(s)	766
AxyI	CCTNAGG	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	36
BanII	GRGCYC	2 cut(s)	36, 767
BbvI	GCAGC	2 cut(s)	92, 660
BccI	CCATC	4 cut(s)	149, 344, 584, 593
BceAI	ACGGC	4 cut(s)	211, 348, 409, 1003
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	2 cut(s)	767, 768
BfaI	CTAG	2 cut(s)	404, 459
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	2 cut(s)	106, 649
BlsI	GCNGC	2 cut(s)	107, 650
Bme1390I	CCNGG	2 cut(s)	767, 768
BmeT110I	CYCGRG	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	32, 33
BmiI	GGNNCC	3 cut(s)	33, 34, 35
BmrFI	CCNGG	2 cut(s)	767, 768
BmsI	GCATC	1 cut(s)	241
BpuMI	CCSGG	2 cut(s)	767, 768
BsaBI	GATNNNNATC	1 cut(s)	753
BsaJI	CCNNGG	5 cut(s)	44, 330, 766, 988, 1079
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 608, 840
Bse1I	ACTGG	1 cut(s)	892
Bse21I	CCTNAGG	1 cut(s)	607
Bse8I	GATNNNNATC	1 cut(s)	753
BseDI	CCNNGG	5 cut(s)	44, 330, 766, 988, 1079
BseGI	GGATG	2 cut(s)	336, 973
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	3 cut(s)	251, 608, 840
BseNI	ACTGG	1 cut(s)	892
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	92, 660
BseYI	CCCAGC	1 cut(s)	651
BshFI	GGCC	3 cut(s)	34, 283, 335
BsiHKCI	CYCGRG	1 cut(s)	766
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	2 cut(s)	463, 566
BslI	CCNNNNNNNGG	3 cut(s)	251, 608, 840
BsmFI	GGGAC	2 cut(s)	463, 566
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	34, 283, 335
BsoBI	CYCGRG	1 cut(s)	766
Bsp120I	GGGCCC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	36, 767
Bsp143I	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
Bsp19I	CCATGG	2 cut(s)	44, 1079
BspACI	CCGC	3 cut(s)	230, 272, 625
BspANI	GGCC	3 cut(s)	34, 283, 335
BspLI	GGNNCC	3 cut(s)	33, 34, 35
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	749
BsrBI	CCGCTC	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	892
BssECI	CCNNGG	5 cut(s)	44, 330, 766, 988, 1079
BssMI	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
BssT1I	CCWWGG	2 cut(s)	44, 1079
Bst4CI	ACNGT	1 cut(s)	992
BstC8I	GCNNGC	3 cut(s)	200, 398, 473
BstDEI	CTNAG	1 cut(s)	607
BstDSI	CCRYGG	4 cut(s)	44, 330, 988, 1079
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	336, 973
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	7 cut(s)	292, 387, 736, 757, 868, 975, 1027
BstMBI	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 468
BstSCI	CCNGG	2 cut(s)	765, 766
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	92, 660
BstXI	CCANNNNNNTGG	1 cut(s)	1062
Bsu36I	CCTNAGG	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	34, 283, 335
BtgI	CCRYGG	4 cut(s)	44, 330, 988, 1079
BtsCI	GGATG	2 cut(s)	336, 973
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	200, 398, 473
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	32, 33
Cfr9I	CCCGGG	1 cut(s)	766
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	442, 790
CviAII	CATG	5 cut(s)	45, 52, 453, 533, 1080
CviQI	GTAC	2 cut(s)	442, 790
DdeI	CTNAG	1 cut(s)	607
DpnI	GATC	7 cut(s)	291, 386, 735, 756, 867, 974, 1026
DpnII	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
EaeI	YGGCCR	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	44, 1079
Eco24I	GRGCYC	2 cut(s)	36, 767
Eco32I	GATATC	1 cut(s)	900
Eco81I	CCTNAGG	1 cut(s)	607
Eco88I	CYCGRG	1 cut(s)	766
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoO109I	RGGNCCY	2 cut(s)	32, 33
EcoRI	GAATTC	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	900
EcoT14I	CCWWGG	2 cut(s)	44, 1079
EcoT38I	GRGCYC	2 cut(s)	36, 767
ErhI	CCWWGG	2 cut(s)	44, 1079
FaeI	CATG	5 cut(s)	48, 55, 456, 536, 1083
FaqI	GGGAC	2 cut(s)	463, 566
FatI	CATG	5 cut(s)	44, 51, 452, 532, 1079
FauI	CCCGC	2 cut(s)	237, 279
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	2 cut(s)	106, 649
FokI	GGATG	2 cut(s)	323, 980
FriOI	GRGCYC	2 cut(s)	36, 767
Fsp4HI	GCNGC	2 cut(s)	106, 649
FspBI	CTAG	2 cut(s)	404, 459
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	106, 649
GsaI	CCCAGC	1 cut(s)	655
HaeIII	GGCC	3 cut(s)	34, 283, 335
HapII	CCGG	1 cut(s)	767
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	5 cut(s)	48, 55, 456, 536, 1083
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	599
HindII	GTYRAC	1 cut(s)	599
HinfI	GANTC	6 cut(s)	5, 79, 241, 683, 714, 1044
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	3 cut(s)	217, 704, 782
Hpy166II	GTNNAC	1 cut(s)	599
Hpy188I	TCNGA	2 cut(s)	581, 669
Hpy188III	TCNNGA	6 cut(s)	158, 238, 252, 404, 559, 731
Hpy8I	GTNNAC	1 cut(s)	599
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	1 cut(s)	992
HpyCH4V	TGCA	4 cut(s)	431, 521, 619, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 468
HpyF3I	CTNAG	1 cut(s)	607
Hsp92II	CATG	5 cut(s)	48, 55, 456, 536, 1083
HspAI	GCGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	92, 660
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	404, 459
MalI	GATC	7 cut(s)	291, 386, 735, 756, 867, 974, 1026
MbiI	CCGCTC	1 cut(s)	627
MboI	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	36, 767
MluCI	AATT	8 cut(s)	246, 261, 297, 370, 516, 656, 823, 1028
MlyI	GAGTC	3 cut(s)	73, 692, 723
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	139, 355, 364, 460, 577, 769
MseI	TTAA	2 cut(s)	816, 981
MspA1I	CMGCKG	2 cut(s)	274, 651
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	2 cut(s)	767, 768
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	280, 468
NciI	CCSGG	2 cut(s)	767, 768
NcoI	CCATGG	2 cut(s)	44, 1079
NdeII	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
NlaIII	CATG	5 cut(s)	48, 55, 456, 536, 1083
NlaIV	GGNNCC	3 cut(s)	33, 34, 35
NsbI	TGCGCA	1 cut(s)	314
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	5, 241, 1044
PflMI	CCANNNNNTGG	2 cut(s)	251, 840
PkrI	GCNGC	2 cut(s)	107, 650
PleI	GAGTC	3 cut(s)	73, 691, 722
PpsI	GAGTC	3 cut(s)	73, 691, 722
PspFI	CCCAGC	1 cut(s)	651
PspN4I	GGNNCC	3 cut(s)	33, 34, 35
PspOMI	GGGCCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	32, 33
PvuII	CAGCTG	1 cut(s)	651
RsaI	GTAC	2 cut(s)	443, 791
RsaNI	GTAC	2 cut(s)	442, 790
SalI	GTCGAC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	816, 981
SatI	GCNGC	2 cut(s)	106, 649
Sau3AI	GATC	7 cut(s)	289, 384, 733, 754, 865, 972, 1024
Sau96I	GGNCC	2 cut(s)	32, 33
SchI	GAGTC	3 cut(s)	73, 692, 723
ScrFI	CCNGG	2 cut(s)	767, 768
SduI	GDGCHC	2 cut(s)	36, 767
SetI	ASST	8 cut(s)	312, 411, 464, 516, 569, 604, 613, 653
SfaNI	GCATC	1 cut(s)	241
SmaI	CCCGGG	1 cut(s)	768
Sse9I	AATT	8 cut(s)	246, 261, 297, 370, 516, 656, 823, 1028
SsiI	CCGC	3 cut(s)	230, 272, 625
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	2 cut(s)	404, 459
StyD4I	CCNGG	2 cut(s)	765, 766
StyI	CCWWGG	2 cut(s)	44, 1079
TaaI	ACNGT	1 cut(s)	992
TaqI	TCGA	5 cut(s)	144, 598, 629, 896, 1047
TasI	AATT	8 cut(s)	246, 261, 297, 370, 516, 656, 823, 1028
TfiI	GAWTC	3 cut(s)	5, 241, 1044
Tru1I	TTAA	2 cut(s)	816, 981
Tru9I	TTAA	2 cut(s)	816, 981
TseI	GCWGC	2 cut(s)	105, 648
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	3 cut(s)	584, 747, 777
TspMI	CCCGGG	1 cut(s)	766
Van91I	CCANNNNNTGG	2 cut(s)	251, 840
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	3 cut(s)	261, 656, 823
XbaI	TCTAGA	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1059
XmaI	CCCGGG	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	2 cut(s)	404, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.