Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

21829009 .. 21830303

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1223500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTTCGGAAAAGTATATCACCGTCGCCACAAAACGAGAAGATCAATATCACCAAATTGGCCCGACCTCCAATCTGAAATATTAGAGTTATTCATGAAAAATTTCTCCTTCCCCGACAAGCTACGATTTAAATCTGTTTGTTCTTCTTGGAATCACGCCAAGAAATGTTATTATGCCACATCGTTTCCTCAAACTTCTCCATGGCTCATGCTTCCCAGTGATGAAGAAAATGTTGTTAACACTCGTTGCTTCTACAGCCTTAGAGAAGAAAAAGTTTACACTATCAAGAGCGTATTACAAGAATGTCATGATGCTTGGTGCGTTGGTTCATCATACGGTTGGCTGGTGATCATGGACAACAATTCAATCCCGCATCTGTTGAATCCAGTTTCGCGGCGTAGAATTCAACTCCCACAAATTTGGTCTCTGCATTGCCCCATCAATCCTGACAGCATTGAACAATTGCGCACGAATTTTATTGCCAAAGCTGTCCTCTCATCCGACCCTTCTCACAACGACAGCTTTGTTGTTGCGATAATTTATGGTGCGTTACCTTCAAAACTTGGGTTTTGCAAGTATGGGGAGAAGGGCAGCAGATGGAGAGGTTTAGAAGGTGTGCATGGAGAATACTGTGATGTTATTTTCCACAAAGAGAAGTTGTATGCATTGGCAGGGGACGGCTCGGTCGAAGTTTGGGACTTCAAAAAATCTTCTACTCCTATCAAAACCATGAACCTTCATCAACCATTTTTAGAACTTGAAAGTGTGAATCGTATAACTAAAGACTTGTCCAAGGAAAAATATTCTACTCAAACTTACTTGGTGGAGTCTTTGGGTGAGATTTTGTCGGTGGGGCGAGTTATCGGCAACTTCGTCAACCATGAGGGCACGGCTATTTGTGAGGGGGATTTAGATGAGTACGGTTGCTTCTGTCCCTATAGAACATTGCAGTTTTATGTCCTTAAGTTGAATTTCACAGCCACTAAGTGGGAGAAAGTTGAGTCTTTGCGAGATCGTGCCTTATTTTTAGGCGGGAATCAGTCGATGTCAGTATCCGTTCATGATTTTCCAGAATGCGAAGAAAACTCAATTTACTTCACAGACGATAGATGGGACGAGATCACTTTAGACGTCGGTAGAGATCACGACTATGATTATGGTGGTCACGATGTGGGAGTATACAACATAGCTAACAAAGTTGTGAAGCCAATTTATGAATTTCGGAAGTGGAGAGTTGATCCGCCACCCTTTTGGATAGTTCCTAATCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

425

Amino Acids

49.15

Weight (kDa)

6.4

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	84 - 395	1.1e-59	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
AatII	GACGTC	1 cut(s)	1134
Acc16I	TGCGCA	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	987
AccI	GTMKAC	1 cut(s)	1179
AccII	CGCG	1 cut(s)	394
AciI	CCGC	4 cut(s)	371, 394, 1032, 1241
AclWI	GGATC	1 cut(s)	1232
AcsI	RAATTY	6 cut(s)	100, 402, 417, 472, 970, 1217
AcyI	GRCGYC	1 cut(s)	1131
AdeI	CACNNNGTG	2 cut(s)	987, 1171
AfaI	GTAC	1 cut(s)	920
AfiI	CCNNNNNNNGG	1 cut(s)	987
AflII	CTTAAG	1 cut(s)	962
AgsI	TTSAA	8 cut(s)	366, 382, 407, 458, 558, 703, 761, 970
AluBI	AGCT	4 cut(s)	121, 488, 522, 1190
AluI	AGCT	4 cut(s)	121, 488, 522, 1190
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	1232
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	591
ApoI	RAATTY	6 cut(s)	100, 402, 417, 472, 970, 1217
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	11, 42, 358, 848
BaeGI	GKGCMC	1 cut(s)	890
BarI	GAAGNNNNNNTAC	2 cut(s)	911, 943
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	3 cut(s)	446, 591, 1104
BceAI	ACGGC	2 cut(s)	694, 906
BciVI	GTATCC	1 cut(s)	1063
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	429
BfmI	CTRYAG	2 cut(s)	253, 937
BfrI	CTTAAG	1 cut(s)	962
BfuI	GTATCC	1 cut(s)	1063
BisI	GCNGC	2 cut(s)	395, 592
BlsI	GCNGC	2 cut(s)	396, 593
BmgT120I	GGNCC	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	301, 382
BmuI	ACTGGG	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	46, 130
BsaHI	GRCGYC	1 cut(s)	1131
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	200, 792, 1268
Bsc4I	CCNNNNNNNGG	1 cut(s)	987
Bse1I	ACTGG	2 cut(s)	216, 386
Bse3DI	GCAATG	2 cut(s)	430, 944
Bse8I	GATNNNNATC	2 cut(s)	46, 130
BseDI	CCNNGG	3 cut(s)	200, 792, 1268
BseGI	GGATG	1 cut(s)	497
BseJI	GATNNNNATC	2 cut(s)	46, 130
BseLI	CCNNNNNNNGG	1 cut(s)	987
BseMI	GCAATG	2 cut(s)	430, 944
BseNI	ACTGG	2 cut(s)	216, 386
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	1 cut(s)	603
Bsh1236I	CGCG	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	687
BshFI	GGCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	687
BslFI	GGGAC	4 cut(s)	689, 710, 918, 1127
BslI	CCNNNNNNNGG	1 cut(s)	987
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	4 cut(s)	689, 710, 918, 1127
BsmI	GAATGC	1 cut(s)	1079
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp143I	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
Bsp19I	CCATGG	2 cut(s)	200, 1268
BspACI	CCGC	4 cut(s)	371, 394, 1032, 1241
BspANI	GGCC	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	394
BspHI	TCATGA	3 cut(s)	93, 307, 1060
BspPI	GGATC	1 cut(s)	1232
BspTI	CTTAAG	1 cut(s)	962
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	430, 944
BsrI	ACTGG	2 cut(s)	216, 386
BssECI	CCNNGG	3 cut(s)	200, 792, 1268
BssMI	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
BssNAI	GTATAC	1 cut(s)	1180
BssNI	GRCGYC	1 cut(s)	1131
BssT1I	CCWWGG	3 cut(s)	200, 792, 1268
Bst1107I	GTATAC	1 cut(s)	1180
Bst4CI	ACNGT	4 cut(s)	23, 338, 632, 923
BstACI	GRCGYC	1 cut(s)	1131
BstAFI	CTTAAG	1 cut(s)	962
BstDEI	CTNAG	2 cut(s)	260, 984
BstDSI	CCRYGG	2 cut(s)	200, 1268
BstF5I	GGATG	1 cut(s)	497
BstFNI	CGCG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	6 cut(s)	44, 351, 1015, 1122, 1144, 1240
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
BstMCI	CGRYCG	1 cut(s)	687
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	253, 937
BstSLI	GKGCMC	1 cut(s)	890
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	603
BstXI	CCANNNNNNTGG	2 cut(s)	420, 1251
BstZ17I	GTATAC	1 cut(s)	1180
BsuI	GTATCC	1 cut(s)	1063
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	2 cut(s)	200, 1268
BtsCI	GGATG	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	223
CciI	TCATGA	3 cut(s)	93, 307, 1060
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	919
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	2 cut(s)	260, 984
DpnI	GATC	6 cut(s)	43, 350, 1014, 1121, 1143, 1239
DpnII	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
DraI	TTTAAA	1 cut(s)	130
DraIII	CACNNNGTG	2 cut(s)	987, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
EciI	GGCGGA	1 cut(s)	1230
Eco130I	CCWWGG	3 cut(s)	200, 792, 1268
Eco31I	GGTCTC	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	402
EcoT14I	CCWWGG	3 cut(s)	200, 792, 1268
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	3 cut(s)	200, 792, 1268
FaqI	GGGAC	4 cut(s)	689, 710, 918, 1127
FauI	CCCGC	2 cut(s)	378, 1025
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	1179
Fnu4HI	GCNGC	2 cut(s)	395, 592
FokI	GGATG	1 cut(s)	484
Fsp4HI	GCNGC	2 cut(s)	395, 592
FspI	TGCGCA	1 cut(s)	467
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	2 cut(s)	395, 592
HaeIII	GGCC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	468
Hin1I	GRCGYC	1 cut(s)	1131
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	2 cut(s)	238, 877
HindII	GTYRAC	2 cut(s)	238, 877
HinfI	GANTC	6 cut(s)	151, 382, 769, 827, 1001, 1036
HpaI	GTTAAC	1 cut(s)	238
HphI	GGTGA	4 cut(s)	11, 42, 358, 848
Hpy166II	GTNNAC	4 cut(s)	238, 277, 877, 1180
Hpy188I	TCNGA	4 cut(s)	8, 76, 502, 1224
Hpy188III	TCNNGA	8 cut(s)	94, 286, 308, 446, 1061, 1070, 1145, 1166
Hpy8I	GTNNAC	4 cut(s)	238, 277, 877, 1180
Hpy99I	CGWCG	2 cut(s)	27, 1136
HpyAV	CCTTC	6 cut(s)	118, 516, 564, 580, 605, 746
HpyCH4III	ACNGT	4 cut(s)	23, 338, 632, 923
HpyCH4IV	ACGT	1 cut(s)	1131
HpyCH4V	TGCA	5 cut(s)	430, 573, 619, 665, 949
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	260, 984
HpySE526I	ACGT	1 cut(s)	1131
Hsp92I	GRCGYC	1 cut(s)	1131
HspAI	GCGC	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	348
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
LpnPI	CCDG	6 cut(s)	229, 329, 399, 459, 657, 1083
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	2 cut(s)	301, 382
MaeII	ACGT	1 cut(s)	1131
MaeIII	GTNAC	2 cut(s)	549, 1163
MalI	GATC	6 cut(s)	43, 350, 1014, 1121, 1143, 1239
MboI	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
MboII	GAAGA	6 cut(s)	51, 135, 236, 278, 702, 1091
MfeI	CAATTG	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	890
MlyI	GAGTC	2 cut(s)	836, 1010
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	6 cut(s)	77, 198, 503, 596, 877, 895
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	3 cut(s)	129, 237, 963
MslI	CAYNNNNRTG	1 cut(s)	1149
MspCI	CTTAAG	1 cut(s)	962
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	1079
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	255
NcoI	CCATGG	2 cut(s)	200, 1268
NdeII	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
NmuCI	GTSAC	1 cut(s)	1163
NsbI	TGCGCA	1 cut(s)	467
NsiI	ATGCAT	1 cut(s)	667
PagI	TCATGA	3 cut(s)	93, 307, 1060
PcsI	WCGNNNNNNNCGW	2 cut(s)	684, 870
PctI	GAATGC	1 cut(s)	1079
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	4 cut(s)	151, 382, 769, 1036
PflMI	CCANNNNNTGG	1 cut(s)	987
PkrI	GCNGC	2 cut(s)	396, 593
PleI	GAGTC	2 cut(s)	835, 1009
PpsI	GAGTC	2 cut(s)	835, 1009
PspPI	GGNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	1 cut(s)	1149
SaqAI	TTAA	3 cut(s)	129, 237, 963
SatI	GCNGC	2 cut(s)	395, 592
Sau3AI	GATC	6 cut(s)	41, 348, 1012, 1119, 1141, 1237
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	2 cut(s)	836, 1010
SduI	GDGCHC	1 cut(s)	890
SfaNI	GCATC	2 cut(s)	301, 382
SfcI	CTRYAG	2 cut(s)	253, 937
SmiI	ATTTAAAT	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	1149
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
SsiI	CCGC	4 cut(s)	371, 394, 1032, 1241
SspI	AATATT	2 cut(s)	81, 803
StyI	CCWWGG	3 cut(s)	200, 792, 1268
SwaI	ATTTAAAT	1 cut(s)	130
TaaI	ACNGT	4 cut(s)	23, 338, 632, 923
TaiI	ACGT	1 cut(s)	1134
TaqI	TCGA	2 cut(s)	687, 1043
TaqII	GACCGA	1 cut(s)	673
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	4 cut(s)	151, 382, 769, 1036
Tru1I	TTAA	3 cut(s)	129, 237, 963
Tru9I	TTAA	3 cut(s)	129, 237, 963
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	1163
TseI	GCWGC	1 cut(s)	591
Tsp45I	GTSAC	1 cut(s)	1163
TspDTI	ATGAA	8 cut(s)	82, 110, 237, 318, 728, 746, 1049, 1230
TspGWI	ACGGA	1 cut(s)	1045
TspRI	CASTG	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	987
Vha464I	CTTAAG	1 cut(s)	962
XapI	RAATTY	6 cut(s)	100, 402, 417, 472, 970, 1217
XmiI	GTMKAC	1 cut(s)	1179
XmnI	GAANNNNTTC	1 cut(s)	101
ZraI	GACGTC	1 cut(s)	1132
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.