RchiOBHm_Chr4g0430571

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
55082559 .. 55083707
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39929

Sequence Viewer

Length: 1149 bp
ATGCCAAACTGGTGCGATCTCCCATTAGAACTGTTAGAGCTGATCTCGAAGAAGCTTGCTTTTATCGACAAAGTTCGATTCAAATCCGTCTGTTCTTGTTGGAAAAGCGCTGCAGAATCTTATACCTCTTCACCAAATTATACACCTGCGCCTGAAGCTCCGTGGCTCATGGTCCCTCTCCCTCCTGATCATCAACGAGTACAGACTGGTGATAAGGATGCTCACTACTTCTGGTTCTTTAGCCTCACAGAGAAAAAGTTTCATAAGATCAAGACCTCTTTTGAAGGCTTTCATTATCCTCACGTAACATATGTGGGTTCCTCACATGGATGGCTTGCGATTTGCGACCTCAGTAAGGCAATGGTTTATCTTCTCAATCCGGTTTCGGGATCTAGAATCGATCTCCCATCGATTTCGACTCTTCCTAACATTGTTGAAGGATGCAATCCCAGAGTTTTCCGAGTTGTGCCCTCCTCCGACCCGTCTCGCAACAAGAAATTTTTCATTGTGGTGAAGTACTGGTCTCCTCACAGTAAACTAGCTTTTTGTAAGAATGGAGATGAAAAATGGACCTACTTATTAGGCGGTGGTCGGTTATGTTTTACATTCCACAAAGGCCATTTATATGCATTACGCAAGGAAATCCTTGAGGTTTGGGACTTGGGAGGAACTTATCCCATGAAAACCGTGGATTTTCGCCATGGACTAGGGCCTGTGGTTACAGGAATGAATTTCTTGGAGTCAACAGTAGTGAATACGGTGGACTCACTGGGTGAACTTTATTTGTTTGGGAAGAGAATTGGCTGCGGTAAGACCATATCAAAGGAGGATTTCCATATCTACAAGTTAAATTTCACCGCCAAGGAGTGGGAGAAAGTGGAATGTTTGAATGATCAAGCTATATTTTGTGATCATTTTTGTAATCCTGCTGAAGGAGTGATGTTATTATCAACTCGGAATCTCCCAGAACTTGAAGAAAACTCAATATACTTCAGTGATTGGGGAAAGTATGAAGTGAGTAAGTGGCGAAAGTATGAAGTGAGTGGATTACTATTCAGCTTGGAAAGTCAAGTTACTAAGGAGTACTCTAACTTTCGCTGGATGCGTGTTGCTCAACCTTATGTTTGGATTGTTCCTAATCCATGGTGA

Protein Analysis

382

Amino Acids

44.07

Weight (kDa)

8.36

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 40 1.2e-06 F-box domain
Beta-prop_KIB1-4 PF03478 79 - 338 3.4e-41 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 867
AciI CCGC 3 cut(s) 585, 807, 858
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 3 cut(s) 497, 730, 850
AcuI CTGAAG 3 cut(s) 174, 951, 976
AdeI CACNNNGTG 1 cut(s) 773
AfaI GTAC 3 cut(s) 201, 518, 1085
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 4 cut(s) 355, 386, 867, 932
AgsI TTSAA 5 cut(s) 82, 284, 437, 889, 974
AluBI AGCT 6 cut(s) 40, 55, 158, 542, 899, 1059
AluI AGCT 6 cut(s) 40, 55, 158, 542, 899, 1059
Alw26I GTCTC 2 cut(s) 489, 528
AlwI GGATC 1 cut(s) 397
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 2 cut(s) 616, 710
ApeKI GCWGC 2 cut(s) 110, 804
ApoI RAATTY 3 cut(s) 497, 730, 850
Asp700I GAANNNNTTC 2 cut(s) 288, 500
AspLEI GCGC 2 cut(s) 110, 151
AspS9I GGNCC 3 cut(s) 172, 570, 710
AsuHPI GGTGA 5 cut(s) 123, 221, 523, 785, 847
AvaII GGWCC 2 cut(s) 172, 570
BaeGI GKGCMC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 97, 791
BccI CCATC 2 cut(s) 324, 415
BclI TGATCA 3 cut(s) 187, 892, 910
BcoDI GTCTC 2 cut(s) 489, 528
BfaI CTAG 3 cut(s) 393, 539, 707
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 2 cut(s) 111, 805
BlsI GCNGC 2 cut(s) 112, 806
BmcAI AGTACT 2 cut(s) 518, 1085
Bme18I GGWCC 2 cut(s) 172, 570
BmgT120I GGNCC 3 cut(s) 172, 570, 710
BmiI GGNNCC 2 cut(s) 174, 319
BmrI ACTGGG 1 cut(s) 779
BmsI GCATC 3 cut(s) 208, 431, 1092
BmuI ACTGGG 1 cut(s) 779
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 1 cut(s) 668
Bsa29I ATCGAT 2 cut(s) 399, 410
BsaAI YACGTR 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 5 cut(s) 161, 687, 700, 861, 1142
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 386, 867, 932
Bse1I ACTGG 4 cut(s) 14, 211, 524, 774
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 82
BseCI ATCGAT 2 cut(s) 399, 410
BseDI CCNNGG 5 cut(s) 161, 687, 700, 861, 1142
BseGI GGATG 4 cut(s) 223, 335, 446, 1107
BseJI GATNNNNATC 1 cut(s) 82
BseLI CCNNNNNNNGG 4 cut(s) 355, 386, 867, 932
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 4 cut(s) 14, 211, 524, 774
BseRI GAGGAG 2 cut(s) 463, 516
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 2 cut(s) 97, 791
BshFI GGCC 2 cut(s) 618, 712
BshVI ATCGAT 2 cut(s) 399, 410
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 2 cut(s) 158, 671
BslI CCNNNNNNNGG 4 cut(s) 355, 386, 867, 932
BsmAI GTCTC 2 cut(s) 489, 528
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 2 cut(s) 158, 671
BsnI GGCC 2 cut(s) 618, 712
Bso31I GGTCTC 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
Bsp19I CCATGG 2 cut(s) 700, 1142
BspACI CCGC 3 cut(s) 585, 807, 858
BspANI GGCC 2 cut(s) 618, 712
BspCNI CTCAG 1 cut(s) 363
BspDI ATCGAT 2 cut(s) 399, 410
BspLI GGNNCC 2 cut(s) 174, 319
BspMAI CTGCAG 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 397
BspTNI GGTCTC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 4 cut(s) 14, 211, 524, 774
BssECI CCNNGG 5 cut(s) 161, 687, 700, 861, 1142
BssMI GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
BssT1I CCWWGG 3 cut(s) 700, 861, 1142
Bst4CI ACNGT 5 cut(s) 33, 533, 688, 748, 760
Bst6I CTCTTC 3 cut(s) 133, 426, 788
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 57, 336
BstDEI CTNAG 2 cut(s) 350, 1077
BstDSI CCRYGG 4 cut(s) 161, 687, 700, 1142
BstENI CCTNNNNNAGG 2 cut(s) 353, 930
BstF5I GGATG 4 cut(s) 223, 335, 446, 1107
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 151
BstKTI GATC 8 cut(s) 19, 45, 190, 270, 392, 403, 895, 913
BstMAI GTCTC 2 cut(s) 489, 528
BstMBI GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 2 cut(s) 97, 791
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
Bsu15I ATCGAT 2 cut(s) 399, 410
BsuRI GGCC 2 cut(s) 618, 712
BsuTUI ATCGAT 2 cut(s) 399, 410
BtgI CCRYGG 4 cut(s) 161, 687, 700, 1142
BtsCI GGATG 4 cut(s) 223, 335, 446, 1107
BtsIMutI CAGTG 2 cut(s) 767, 1000
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 57, 336
CfoI GCGC 2 cut(s) 110, 151
Cfr13I GGNCC 3 cut(s) 172, 570, 710
ClaI ATCGAT 2 cut(s) 399, 410
Csp6I GTAC 3 cut(s) 200, 517, 1084
CviAII CATG 5 cut(s) 169, 326, 679, 701, 1143
CviQI GTAC 3 cut(s) 200, 517, 1084
DdeI CTNAG 2 cut(s) 350, 1077
DpnI GATC 8 cut(s) 18, 44, 189, 269, 391, 402, 894, 912
DpnII GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
DraIII CACNNNGTG 1 cut(s) 773
Eam1104I CTCTTC 3 cut(s) 133, 426, 788
EarI CTCTTC 3 cut(s) 133, 426, 788
Eco130I CCWWGG 3 cut(s) 700, 861, 1142
Eco31I GGTCTC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 172, 570
Eco47III AGCGCT 1 cut(s) 109
Eco57I CTGAAG 3 cut(s) 174, 951, 976
EcoNI CCTNNNNNAGG 2 cut(s) 353, 930
EcoO109I RGGNCCY 1 cut(s) 710
EcoT14I CCWWGG 3 cut(s) 700, 861, 1142
EcoT22I ATGCAT 1 cut(s) 631
ErhI CCWWGG 3 cut(s) 700, 861, 1142
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 5 cut(s) 172, 329, 682, 704, 1146
FaqI GGGAC 2 cut(s) 158, 671
FatI CATG 5 cut(s) 168, 325, 678, 700, 1142
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 3 cut(s) 187, 892, 910
Fnu4HI GCNGC 2 cut(s) 111, 805
FokI GGATG 4 cut(s) 230, 342, 453, 1114
Fsp4HI GCNGC 2 cut(s) 111, 805
FspBI CTAG 3 cut(s) 393, 539, 707
GlaI GCGC 2 cut(s) 109, 150
GluI GCNGC 2 cut(s) 111, 805
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 618, 712
HapII CCGG 1 cut(s) 380
HhaI GCGC 2 cut(s) 110, 151
Hin1II CATG 5 cut(s) 172, 329, 682, 704, 1146
Hin6I GCGC 2 cut(s) 108, 149
HinP1I GCGC 2 cut(s) 108, 149
HincII GTYRAC 1 cut(s) 744
HindII GTYRAC 1 cut(s) 744
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 7 cut(s) 78, 116, 396, 418, 740, 764, 958
HpaII CCGG 1 cut(s) 380
HphI GGTGA 5 cut(s) 123, 221, 523, 785, 847
Hpy166II GTNNAC 4 cut(s) 536, 744, 763, 776
Hpy188I TCNGA 3 cut(s) 461, 478, 957
Hpy188III TCNNGA 5 cut(s) 46, 185, 271, 387, 393
Hpy8I GTNNAC 4 cut(s) 536, 744, 763, 776
HpyAV CCTTC 3 cut(s) 278, 431, 926
HpyCH4III ACNGT 5 cut(s) 33, 533, 688, 748, 760
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 113, 444, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 350, 1077
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 5 cut(s) 172, 329, 682, 704, 1146
HspAI GCGC 2 cut(s) 108, 149
Ksp22I TGATCA 3 cut(s) 187, 892, 910
Kzo9I GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 97, 791
LweI GCATC 3 cut(s) 208, 431, 1092
MaeI CTAG 3 cut(s) 393, 539, 707
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 304, 718, 1072
MalI GATC 8 cut(s) 18, 44, 189, 269, 391, 402, 894, 912
MboI GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
MboII GAAGA 6 cut(s) 61, 120, 362, 413, 805, 986
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 5 cut(s) 136, 497, 730, 798, 850
MlyI GAGTC 3 cut(s) 412, 749, 758
MmeI TCCRAC 2 cut(s) 80, 501
Mph1103I ATGCAT 1 cut(s) 631
MroXI GAANNNNTTC 2 cut(s) 288, 500
MseI TTAA 1 cut(s) 848
MslI CAYNNNNRTG 3 cut(s) 328, 509, 624
MspI CCGG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 155
NcoI CCATGG 2 cut(s) 700, 1142
NdeI CATATG 1 cut(s) 310
NdeII GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
NlaIII CATG 5 cut(s) 172, 329, 682, 704, 1146
NlaIV GGNNCC 2 cut(s) 174, 319
NsiI ATGCAT 1 cut(s) 631
PaqCI CACCTGC 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 1102
PdmI GAANNNNTTC 2 cut(s) 288, 500
PfeI GAWTC 4 cut(s) 78, 116, 396, 958
PflMI CCANNNNNTGG 1 cut(s) 867
PkrI GCNGC 2 cut(s) 112, 806
PleI GAGTC 3 cut(s) 412, 748, 758
PpsI GAGTC 3 cut(s) 412, 748, 758
Ppu21I YACGTR 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 174, 319
PspPI GGNCC 3 cut(s) 172, 570, 710
PstI CTGCAG 1 cut(s) 115
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 3 cut(s) 201, 518, 1085
RsaNI GTAC 3 cut(s) 200, 517, 1084
RseI CAYNNNNRTG 3 cut(s) 328, 509, 624
SaqAI TTAA 1 cut(s) 848
SatI GCNGC 2 cut(s) 111, 805
Sau3AI GATC 8 cut(s) 16, 42, 187, 267, 389, 400, 892, 910
Sau96I GGNCC 3 cut(s) 172, 570, 710
ScaI AGTACT 2 cut(s) 518, 1085
SchI GAGTC 3 cut(s) 412, 749, 758
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 3 cut(s) 208, 431, 1092
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 2 cut(s) 172, 570
SmiMI CAYNNNNRTG 3 cut(s) 328, 509, 624
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 5 cut(s) 136, 497, 730, 798, 850
SsiI CCGC 3 cut(s) 585, 807, 858
SspMI CTAG 3 cut(s) 393, 539, 707
StyI CCWWGG 3 cut(s) 700, 861, 1142
TaaI ACNGT 5 cut(s) 33, 533, 688, 748, 760
TaiI ACGT 1 cut(s) 306
TaqI TCGA 6 cut(s) 47, 66, 76, 399, 410, 416
TasI AATT 5 cut(s) 136, 497, 730, 798, 850
TatI WGTACW 3 cut(s) 199, 516, 1083
TfiI GAWTC 4 cut(s) 78, 116, 396, 958
Tru1I TTAA 1 cut(s) 848
Tru9I TTAA 1 cut(s) 848
TscAI CASTG 2 cut(s) 774, 1000
TseI GCWGC 2 cut(s) 110, 804
TspDTI ATGAA 8 cut(s) 251, 281, 493, 576, 695, 743, 1026, 1050
TspGWI ACGGA 2 cut(s) 76, 150
TspRI CASTG 2 cut(s) 774, 1000
Van91I CCANNNNNTGG 1 cut(s) 867
VpaK11BI GGWCC 2 cut(s) 172, 570
XagI CCTNNNNNAGG 2 cut(s) 353, 930
XapI RAATTY 3 cut(s) 497, 730, 850
XbaI TCTAGA 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmnI GAANNNNTTC 2 cut(s) 288, 500
XspI CTAG 3 cut(s) 393, 539, 707
ZrmI AGTACT 2 cut(s) 518, 1085
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.