Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

54170438 .. 54171637

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTGATAAAGAACTCCATTGTTGCACAAAAAGGAGGAAGGTTACAGGCAGCGGGAACCCAACAATACCAAACTGGTCTGAGCTCCAACCTGAACTGTTAGAGTTGATCTTGGGAAAACTTCCGGCTTTTGTCGACATTCTTCGTTTTAGATCTGTTTGTCCTTCTTGGAATCTCACTGCAAAATCTTATATCTCTAACCCCCATCGCTCATCAACATTGCTTCAAACTCCATGGCTCATGGTCCCTAGTGAGCAAGAAGACGACGACGATACTCGCTGCTTCTACAACCTTGCAGAGAAAAAAGTTTACATCATAAAGAACATGTTCAAATCTTTTGATCATGAGCCTCGCTGTGTAGGTTCATTACATGGGTGGCTGGTGATTTGGACCAAGAAAGCAATCATACATCTCTTCAACCCAATTTCTCAAGCTAGAATCGAACTCCCATCAATTACAACTCTTCCCCCCACTGACACCTTATTGGACTTTAACCTTTTTGAGTGTCCCATTACTAAAGCTGTCCTTTCCACTGACCCGTCTTACAACAAGAACTACTTCATTGTGGTAATGTACACAACAGGAAGAAAAAGATTAGCATATTATAAGCATGGAGACTATACATGGAATCACTTAGGCTCTCCGCATCAAGACTATCGTGACATTATGTTCCATAGTAAACACTTATTTGTATGGTCCTCCAATGAAATGGAAGTTTGGGACTTTGGGGCTGCATATCCGATTAAAACGATGGATTTTCGACTTTCGAGTGAGGAGGACAGAGCTTTATACAGATCTTTTACTCTAAACCGTCGGTGGCGTTTGGTAGAGTCATTTGGTGAGCTTCTGCGTGTGGAGCAGCTGCATAATATTTGCAGAGGCGAGTGGCACTTCTATATTTTCAGGTTAAATTTCTCGTCTAAAAAGTGGGAGAAGATGGAACGCTTGGAAGATCGGGCTTTATGTTTGGGTAATGAGCATTCGATAATGTCAATATCTACTCGGGTTCTTCCAGAATTTGAAGAAAACTCAATTTACTTCATAAATGAAGATAAAGAAGATCATGAATCTGTTTTTTGGATTGTTCTTAATCCATCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

368

Amino Acids

43.37

Weight (kDa)

6.54

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	95 - 357	1.1e-49	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	2 cut(s)	54, 644
AcsI	RAATTY	2 cut(s)	910, 1016
AfaI	GTAC	1 cut(s)	575
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	227, 331, 418, 1022
AluBI	AGCT	6 cut(s)	85, 434, 521, 785, 844, 862
AluI	AGCT	6 cut(s)	85, 434, 521, 785, 844, 862
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	609
Ama87I	CYCGRG	1 cut(s)	1002
ApeKI	GCWGC	5 cut(s)	51, 279, 731, 859, 862
ApoI	RAATTY	2 cut(s)	910, 1016
Asp700I	GAANNNNTTC	2 cut(s)	326, 557
AspS9I	GGNCC	3 cut(s)	244, 390, 696
AsuHPI	GGTGA	2 cut(s)	394, 851
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	3 cut(s)	244, 390, 696
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	63, 266, 718, 849, 871
BccI	CCATC	5 cut(s)	213, 457, 745, 931, 1102
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	2 cut(s)	249, 435
BglII	AGATCT	2 cut(s)	152, 794
BisI	GCNGC	5 cut(s)	52, 280, 732, 860, 863
BlsI	GCNGC	5 cut(s)	53, 281, 733, 861, 864
Bme18I	GGWCC	3 cut(s)	244, 390, 696
BmeT110I	CYCGRG	1 cut(s)	1002
BmgT120I	GGNCC	3 cut(s)	244, 390, 696
BmiI	GGNNCC	2 cut(s)	59, 246
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	5 cut(s)	63, 266, 718, 849, 871
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	3 cut(s)	230, 492, 734
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	3 cut(s)	230, 492, 734
BsmI	GAATGC	1 cut(s)	979
BsoBI	CYCGRG	1 cut(s)	1002
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	2 cut(s)	54, 644
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	2 cut(s)	343, 1063
BspLI	GGNNCC	2 cut(s)	59, 246
BsrDI	GCAATG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
BssT1I	CCWWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	99, 812
Bst6I	CTCTTC	2 cut(s)	419, 468
BstAUI	TGTACA	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	81, 634
BstDSI	CCRYGG	1 cut(s)	233
BstKTI	GATC	6 cut(s)	111, 155, 343, 797, 955, 1063
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	856
BstNSI	RCATGY	1 cut(s)	328
BstV1I	GCAGC	5 cut(s)	63, 266, 718, 849, 871
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	152, 794
BstXI	CCANNNNNNTGG	1 cut(s)	709
BstYI	RGATCY	2 cut(s)	152, 794
BtgI	CCRYGG	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	177, 471, 531
CciI	TCATGA	2 cut(s)	343, 1063
Cfr13I	GGNCC	3 cut(s)	244, 390, 696
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	8 cut(s)	234, 241, 325, 344, 371, 611, 624, 1064
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	81, 634
DpnI	GATC	6 cut(s)	110, 154, 342, 796, 954, 1062
DpnII	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
Eam1104I	CTCTTC	2 cut(s)	419, 468
EarI	CTCTTC	2 cut(s)	419, 468
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	244, 390, 696
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	1002
EcoICRI	GAGCTC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	8 cut(s)	237, 244, 328, 347, 374, 614, 627, 1067
FalI	AAGNNNNNCTT	4 cut(s)	510, 542, 542, 574
FaqI	GGGAC	3 cut(s)	230, 492, 734
FatI	CATG	8 cut(s)	233, 240, 324, 343, 370, 610, 623, 1063
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	52, 280, 732, 860, 863
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	52, 280, 732, 860, 863
FspBI	CTAG	2 cut(s)	249, 435
GluI	GCNGC	5 cut(s)	52, 280, 732, 860, 863
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	8 cut(s)	237, 244, 328, 347, 374, 614, 627, 1067
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	5 cut(s)	172, 438, 628, 830, 1067
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	394, 851
Hpy166II	GTNNAC	4 cut(s)	136, 310, 576, 680
Hpy188I	TCNGA	2 cut(s)	82, 741
Hpy188III	TCNNGA	5 cut(s)	344, 650, 659, 1013, 1064
Hpy8I	GTNNAC	4 cut(s)	136, 310, 576, 680
Hpy99I	CGWCG	3 cut(s)	269, 272, 816
HpyAV	CCTTC	2 cut(s)	34, 174
HpyCH4III	ACNGT	2 cut(s)	99, 812
HpyCH4V	TGCA	6 cut(s)	27, 182, 296, 734, 865, 876
HpyF10VI	GCNNNNNNNGC	1 cut(s)	856
HpyF3I	CTNAG	2 cut(s)	81, 634
Hsp92II	CATG	8 cut(s)	237, 244, 328, 347, 374, 614, 627, 1067
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
LmnI	GCTCC	2 cut(s)	90, 856
LpnPI	CCDG	8 cut(s)	33, 61, 105, 138, 365, 567, 889, 1026
Lsp1109I	GCAGC	5 cut(s)	63, 266, 718, 849, 871
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	249, 435
MaeIII	GTNAC	2 cut(s)	43, 659
MalI	GATC	6 cut(s)	110, 154, 342, 796, 954, 1062
MboI	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
MflI	RGATCY	2 cut(s)	152, 794
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	5 cut(s)	423, 453, 910, 1016, 1032
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	30, 360, 709, 766, 769, 872
MroXI	GAANNNNTTC	2 cut(s)	326, 557
MseI	TTAA	4 cut(s)	492, 744, 908, 1089
MspA1I	CMGCKG	2 cut(s)	54, 862
MspI	CCGG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	979
MwoI	GCNNNNNNNGC	1 cut(s)	856
NcoI	CCATGG	1 cut(s)	233
NdeII	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
NlaIII	CATG	8 cut(s)	237, 244, 328, 347, 374, 614, 627, 1067
NlaIV	GGNNCC	2 cut(s)	59, 246
NmuCI	GTSAC	1 cut(s)	659
NspI	RCATGY	1 cut(s)	328
PagI	TCATGA	2 cut(s)	343, 1063
PciI	ACATGT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	979
PdmI	GAANNNNTTC	2 cut(s)	326, 557
PfeI	GAWTC	4 cut(s)	172, 438, 628, 1067
PkrI	GCNGC	5 cut(s)	53, 281, 733, 861, 864
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
PscI	ACATGT	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	59, 246
PspPI	GGNCC	3 cut(s)	244, 390, 696
PsuI	RGATCY	2 cut(s)	152, 794
PvuII	CAGCTG	1 cut(s)	862
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	492, 744, 908, 1089
SatI	GCNGC	5 cut(s)	52, 280, 732, 860, 863
Sau3AI	GATC	6 cut(s)	108, 152, 340, 794, 952, 1060
Sau96I	GGNCC	3 cut(s)	244, 390, 696
SchI	GAGTC	1 cut(s)	839
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	1 cut(s)	655
SinI	GGWCC	3 cut(s)	244, 390, 696
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	5 cut(s)	423, 453, 910, 1016, 1032
SsiI	CCGC	2 cut(s)	54, 644
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	2 cut(s)	249, 435
SstI	GAGCTC	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	99, 812
TaqI	TCGA	5 cut(s)	135, 441, 760, 767, 983
TasI	AATT	5 cut(s)	423, 453, 910, 1016, 1032
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	4 cut(s)	172, 438, 628, 1067
Tru1I	TTAA	4 cut(s)	492, 744, 908, 1089
Tru9I	TTAA	4 cut(s)	492, 744, 908, 1089
TscAI	CASTG	3 cut(s)	184, 478, 538
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	5 cut(s)	51, 279, 731, 859, 862
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	6 cut(s)	354, 550, 720, 1030, 1062, 1080
TspRI	CASTG	3 cut(s)	184, 478, 538
VpaK11BI	GGWCC	3 cut(s)	244, 390, 696
XapI	RAATTY	2 cut(s)	910, 1016
XceI	RCATGY	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	326, 557
XspI	CTAG	2 cut(s)	249, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.