Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

49728978 .. 49730096

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCTTGGTTTCAAAGCTGTCTGTTCTTCTTGGAACTCCATTGCACGATCCTACGCTGCTTCGATTATAGACCAAACTCCATGGCTCACTCTCCCTAGTGATGATGACCACACTCGCCGCTTCTATAGCCTTGAAGAGAAAAAGGTTTACACTGTTAAGAACTCGTTTCAAGACTTTCCTGGTGCTAGCTGGTGTGTGGGTTCATCTCATGGGTGGTTGGTGATTTTGGACGATCCAAACAATATCCCACATCTGTTTAATCCGATTTCGGAAAATAGATCAATGGAGCTCCCACATATCCCAAGTACTACAAATTCCTTGCTTGGTTCCCCTCCCTTCTACCATGTTGCTAAAGCTGTCCTCTCCTCCGACCCGTCTTGCAACAACAACTTCTCCGTTGCAATAATCTACGGTATCCAACCATCAAGACTTGCATTCTACAACCATGGAGACGAGGAATGGACCGACTTAAATGGTGAGCATCAAGAATATTGTGACATTATATTCCACAATGACAAATTATTTGCATTGGCCGACAATGGATGTGTTGAAGCTTGGGACTTTAGGAAACCCTCTCCCAAAAAGATCATAAATCTTCAACCTGCTTCTGCCAAAGATTTGGATCTGGATTACACTTCCAATCGCGACAAGTTTTCCACAAATACTTACTTGGTGGAGTCATCGGATGAGATAATGTCTGTGGTGCGGTGTATAGGGAACTTTGTCAATGAGGAGGGCAAAGCTATCCATGAGATAGACGTTCCTGACGAGCCCTACAGTCCTTGTCCCTATAGGACATTGCAATTTTATGTCTTCAAGCTAAATTTTGCGGCGAACAAGTGGGAGAAAGTGGAATGTTTGCCTAACTGTGCTTTGTTTTTGGGCGGTAGCCAATCAATATCATTGTCCACTAAAGATGTTTCAGGGTGCGAAGAAAACTCAATTTACTTCACAGATGATCGTTGGGACGAGATAGAACTGCTTGGTGATACTGACTTCTATGGCGGCCATGACATGGGAGTGTACAACTTAGAAGACAAAGTCGTGAAGCAATTTTATCCATTTGATAAATGGAGAATTCATCCACCACCTTTTTGGATTGTTCCTAGTCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

372

Amino Acids

42.42

Weight (kDa)

4.79

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	41 - 343	7.4e-56	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AccII	CGCG	1 cut(s)	645
AciI	CCGC	5 cut(s)	118, 706, 830, 885, 1005
AclWI	GGATC	3 cut(s)	42, 227, 630
AcoI	YGGCCR	2 cut(s)	531, 1006
AcsI	RAATTY	3 cut(s)	313, 823, 1077
AfaI	GTAC	2 cut(s)	307, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	1015
AgsI	TTSAA	6 cut(s)	13, 134, 170, 551, 599, 817
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	7 cut(s)	17, 189, 289, 356, 554, 743, 820
AluI	AGCT	7 cut(s)	17, 189, 289, 356, 554, 743, 820
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	42, 227, 630
AoxI	GGCC	2 cut(s)	531, 1006
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	3 cut(s)	313, 823, 1077
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	3 cut(s)	232, 488, 998
AsuNHI	GCTAGC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	462
BanII	GRGCYC	2 cut(s)	291, 774
BbsI	GAAGAC	2 cut(s)	805, 1041
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	3 cut(s)	96, 186, 1107
BfmI	CTRYAG	3 cut(s)	124, 775, 790
BfuAI	ACCTGC	1 cut(s)	610
BfuI	GTATCC	1 cut(s)	425
BisI	GCNGC	4 cut(s)	57, 118, 831, 1006
BlsI	GCNGC	4 cut(s)	58, 119, 832, 1007
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	490
BmtI	GCTAGC	1 cut(s)	189
BpiI	GAAGAC	2 cut(s)	805, 1041
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	3 cut(s)	80, 445, 1112
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	1015
Bse3DI	GCAATG	2 cut(s)	39, 797
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	80, 445, 1112
BseGI	GGATG	3 cut(s)	548, 691, 1081
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	1015
BseMI	GCAATG	2 cut(s)	39, 797
BseRI	GAGGAG	2 cut(s)	355, 746
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	2 cut(s)	533, 1008
BsiHKAI	GWGCWC	1 cut(s)	291
BslFI	GGGAC	3 cut(s)	572, 771, 980
BslI	CCNNNNNNNGG	1 cut(s)	1015
BsmAI	GTCTC	1 cut(s)	444
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	3 cut(s)	572, 771, 980
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	533, 1008
Bsp1286I	GDGCHC	2 cut(s)	291, 774
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
Bsp19I	CCATGG	3 cut(s)	80, 445, 1112
Bsp68I	TCGCGA	1 cut(s)	645
BspACI	CCGC	5 cut(s)	118, 706, 830, 885, 1005
BspANI	GGCC	2 cut(s)	533, 1008
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	610
BspOI	GCTAGC	1 cut(s)	189
BspPI	GGATC	3 cut(s)	42, 227, 630
BsrDI	GCAATG	2 cut(s)	39, 797
BsrGI	TGTACA	1 cut(s)	1023
BssECI	CCNNGG	3 cut(s)	80, 445, 1112
BssMI	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
BssT1I	CCWWGG	3 cut(s)	80, 445, 1112
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	154, 413, 779, 869
Bst6I	CTCTTC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	1023
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	1030
BstDSI	CCRYGG	3 cut(s)	80, 445, 1112
BstF5I	GGATG	3 cut(s)	548, 691, 1081
BstFNI	CGCG	1 cut(s)	645
BstKTI	GATC	6 cut(s)	50, 235, 281, 588, 625, 961
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	3 cut(s)	124, 775, 790
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	805, 1041
BstX2I	RGATCY	1 cut(s)	622
BstXI	CCANNNNNNTGG	2 cut(s)	619, 1095
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	533, 1008
BtgI	CCRYGG	3 cut(s)	80, 445, 1112
BtsCI	GGATG	3 cut(s)	548, 691, 1081
BtsIMutI	CAGTG	1 cut(s)	150
BtuMI	TCGCGA	1 cut(s)	645
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	306, 1024
CviAII	CATG	8 cut(s)	81, 209, 344, 446, 749, 1010, 1015, 1113
CviQI	GTAC	2 cut(s)	306, 1024
DdeI	CTNAG	1 cut(s)	1030
DpnI	GATC	6 cut(s)	49, 234, 280, 587, 624, 960
DpnII	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
EaeI	YGGCCR	2 cut(s)	531, 1006
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	3 cut(s)	80, 445, 1112
Eco24I	GRGCYC	2 cut(s)	291, 774
Eco47I	GGWCC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	1077
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	3 cut(s)	80, 445, 1112
EcoT38I	GRGCYC	2 cut(s)	291, 774
ErhI	CCWWGG	3 cut(s)	80, 445, 1112
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	8 cut(s)	84, 212, 347, 449, 752, 1013, 1018, 1116
FaqI	GGGAC	3 cut(s)	572, 771, 980
FatI	CATG	8 cut(s)	80, 208, 343, 445, 748, 1009, 1014, 1112
Fnu4HI	GCNGC	4 cut(s)	57, 118, 831, 1006
FokI	GGATG	3 cut(s)	555, 698, 1068
FriOI	GRGCYC	2 cut(s)	291, 774
Fsp4HI	GCNGC	4 cut(s)	57, 118, 831, 1006
FspBI	CTAG	3 cut(s)	96, 186, 1107
GluI	GCNGC	4 cut(s)	57, 118, 831, 1006
HaeIII	GGCC	2 cut(s)	533, 1008
Hin1II	CATG	8 cut(s)	84, 212, 347, 449, 752, 1013, 1018, 1116
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	1 cut(s)	677
HphI	GGTGA	3 cut(s)	232, 488, 998
Hpy166II	GTNNAC	3 cut(s)	148, 909, 1024
Hpy188I	TCNGA	4 cut(s)	264, 271, 370, 685
Hpy188III	TCNNGA	7 cut(s)	170, 426, 485, 626, 644, 764, 1045
Hpy8I	GTNNAC	3 cut(s)	148, 909, 1024
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	4 cut(s)	154, 413, 779, 869
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	6 cut(s)	44, 381, 401, 434, 527, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	1030
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	8 cut(s)	84, 212, 347, 449, 752, 1013, 1018, 1116
Kzo9I	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
LmnI	GCTCC	2 cut(s)	286, 294
LpnPI	CCDG	7 cut(s)	165, 175, 192, 611, 615, 777, 909
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	96, 186, 1107
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	6 cut(s)	49, 234, 280, 587, 624, 960
MboI	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
MboII	GAAGA	6 cut(s)	18, 146, 587, 805, 944, 1046
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	2 cut(s)	291, 774
MluCI	AATT	7 cut(s)	313, 518, 803, 823, 942, 1052, 1077
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	2 cut(s)	393, 442
MnlI	CCTC	7 cut(s)	342, 371, 376, 448, 583, 724, 727
MseI	TTAA	3 cut(s)	156, 258, 470
MslI	CAYNNNNRTG	1 cut(s)	1019
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	126
NcoI	CCATGG	3 cut(s)	80, 445, 1112
NdeII	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	8 cut(s)	84, 212, 347, 449, 752, 1013, 1018, 1116
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	494
NruI	TCGCGA	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	765
PctI	GAATGC	1 cut(s)	434
PflFI	GACNNNGTC	1 cut(s)	1040
PflMI	CCANNNNNTGG	1 cut(s)	1015
PkrI	GCNGC	4 cut(s)	58, 119, 832, 1007
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	622
PsyI	GACNNNGTC	1 cut(s)	1040
RruI	TCGCGA	1 cut(s)	645
RsaI	GTAC	2 cut(s)	307, 1025
RsaNI	GTAC	2 cut(s)	306, 1024
RseI	CAYNNNNRTG	1 cut(s)	1019
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	156, 258, 470
SatI	GCNGC	4 cut(s)	57, 118, 831, 1006
Sau3AI	GATC	6 cut(s)	47, 232, 278, 585, 622, 958
Sau96I	GGNCC	1 cut(s)	462
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	291, 774
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	3 cut(s)	124, 775, 790
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	1019
Sse9I	AATT	7 cut(s)	313, 518, 803, 823, 942, 1052, 1077
SsiI	CCGC	5 cut(s)	118, 706, 830, 885, 1005
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	3 cut(s)	96, 186, 1107
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	3 cut(s)	80, 445, 1112
TaaI	ACNGT	4 cut(s)	154, 413, 779, 869
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	479
TasI	AATT	7 cut(s)	313, 518, 803, 823, 942, 1052, 1077
TatI	WGTACW	2 cut(s)	305, 1023
TauI	GCSGC	3 cut(s)	120, 833, 1008
Tru1I	TTAA	3 cut(s)	156, 258, 470
Tru9I	TTAA	3 cut(s)	156, 258, 470
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	192, 1070
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	1040
Van91I	CCANNNNNTGG	1 cut(s)	1015
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	3 cut(s)	313, 823, 1077
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1068, 1092
XspI	CTAG	3 cut(s)	96, 186, 1107
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.