Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

76831120 .. 76831965

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCATGGCTAAGGCCGCCAATGAAATAGCTATGGATGATAAAATCCTCAATGGTTGCACGAGTGACTGGTCTGATCTCCCATTCGATTTATTAGAGTTGATCTTGAAAAGACTTGCACTCGTCGACCTCACATGCTTTAAGCTTGTTTCTCCATCTTGGTATGCCGCTGCAAAATCTTATATCTCTGCCCCGTTTTACAGACCCTTGCTTCCTCAAACTGTATGGCTCATGCTCCCTGGAGCACCCAAAAATATAAATGCCGGCCACTTCTTTAGCCTCACAGAGAAAAAGGTTTACACCTTCAAAAACCTGTTTCGAGGCTTTTCTTATTCCGAAACATGTCTGAGTTCGTCACACAGGTGGCTGGTAATGTTTGACTCGACCACGTTCAGAGTCCATCTTCTCAATCCCAACTATAGGGTTAGAATTAAACTCCCATCTCTAGAGTTTGAGCTTCCCATGCGCAGGGCTAGCAAAGTTGTGCTCATTTCGGATCCGTCTCGCAACAACAACTTTTACGTTGTGGTAAGCTATCAAAAAGTAGAGCCAAGATCACTAGCATTCCACAAGCATGGTGATGATGGAGACAACACTTGGACCGACTTGGACACTAGAGATAAAAGATATGGTGAGATTATATTCCACAACAGCCATTTGTTTGCATTATGCTTGGACTCAAACATAATTGAAGTTTGGGACCTTGGGGGAATCTATCCCTTCATAGCCATGGACTTCCAACCTCCAGAGAGGGATGTAGAACATCTTAGTTTTCGGCTTTATTTAGTGGAATCACTAGCTTTTGTTTGTGGAGAAATGTATGGTTTCTTGTGTATTCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

281

Amino Acids

32.45

Weight (kDa)

6.5

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	24 - 60	2.2e-08	F-box domain
Beta-prop_KIB1-4	PF03478	91 - 273	4.6e-27	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	467
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	2 cut(s)	18, 168
AclWI	GGATC	2 cut(s)	491, 504
AcoI	YGGCCR	2 cut(s)	3, 265
AfiI	CCNNNNNNNGG	2 cut(s)	420, 468
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	109, 307, 692
AjnI	CCWGG	1 cut(s)	238
AleI	CACNNNNGTG	1 cut(s)	361
AluBI	AGCT	5 cut(s)	32, 145, 457, 534, 800
AluI	AGCT	5 cut(s)	32, 145, 457, 534, 800
Alw21I	GWGCWC	2 cut(s)	247, 489
Alw26I	GTCTC	2 cut(s)	507, 582
AlwI	GGATC	2 cut(s)	491, 504
AoxI	GGCC	3 cut(s)	3, 15, 265
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	600, 700
AsuHPI	GGTGA	2 cut(s)	590, 644
AsuNHI	GCTAGC	1 cut(s)	473
AvaII	GGWCC	2 cut(s)	600, 700
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	496
BauI	CACGAG	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	247, 489
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	4 cut(s)	163, 408, 448, 578
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	507, 582
BfaI	CTAG	5 cut(s)	446, 474, 560, 615, 797
BfmI	CTRYAG	1 cut(s)	418
BisI	GCNGC	3 cut(s)	18, 168, 171
BlsI	GCNGC	3 cut(s)	19, 169, 172
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	2 cut(s)	600, 700
BmgT120I	GGNCC	2 cut(s)	600, 700
BmiI	GGNNCC	2 cut(s)	498, 701
BmrFI	CCNGG	1 cut(s)	240
BmtI	GCTAGC	1 cut(s)	477
BpmI	CTGGAG	2 cut(s)	261, 729
Bpu10I	CCTNAGC	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	6, 238, 703, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 468
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	4 cut(s)	6, 238, 703, 729
BseGI	GGATG	2 cut(s)	43, 760
BseLI	CCNNNNNNNGG	2 cut(s)	420, 468
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	3 cut(s)	5, 17, 267
BsiHKAI	GWGCWC	2 cut(s)	247, 489
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	420, 468
BsmAI	GTCTC	2 cut(s)	507, 582
BsmBI	CGTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	5, 17, 267
Bsp1286I	GDGCHC	2 cut(s)	247, 489
Bsp143I	GATC	4 cut(s)	76, 102, 496, 554
Bsp19I	CCATGG	2 cut(s)	6, 729
BspACI	CCGC	2 cut(s)	18, 168
BspANI	GGCC	3 cut(s)	5, 17, 267
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	498, 701
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	491, 504
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	4 cut(s)	6, 238, 703, 729
BssMI	GATC	4 cut(s)	76, 102, 496, 554
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	3 cut(s)	6, 703, 729
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	265, 475
BstDEI	CTNAG	3 cut(s)	12, 347, 767
BstDSI	CCRYGG	2 cut(s)	6, 729
BstF5I	GGATG	2 cut(s)	43, 760
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	4 cut(s)	79, 105, 499, 557
BstMAI	GTCTC	2 cut(s)	507, 582
BstMBI	GATC	4 cut(s)	76, 102, 496, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 463, 474
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	138, 345
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	5, 17, 267
BtgI	CCRYGG	2 cut(s)	6, 729
BtsCI	GGATG	2 cut(s)	43, 760
Cac8I	GCNNGC	2 cut(s)	265, 475
CfoI	GCGC	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	600, 700
CviAII	CATG	7 cut(s)	7, 135, 232, 342, 463, 575, 730
DdeI	CTNAG	3 cut(s)	12, 347, 767
DpnI	GATC	4 cut(s)	78, 104, 498, 556
DpnII	GATC	4 cut(s)	76, 102, 496, 554
EaeI	YGGCCR	2 cut(s)	3, 265
Eco130I	CCWWGG	3 cut(s)	6, 703, 729
Eco47I	GGWCC	2 cut(s)	600, 700
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	3 cut(s)	6, 703, 729
ErhI	CCWWGG	3 cut(s)	6, 703, 729
Esp3I	CGTCTC	1 cut(s)	507
FaeI	CATG	7 cut(s)	10, 138, 235, 345, 466, 578, 733
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	7 cut(s)	6, 134, 231, 341, 462, 574, 729
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	18, 168, 171
FokI	GGATG	2 cut(s)	50, 767
Fsp4HI	GCNGC	3 cut(s)	18, 168, 171
FspBI	CTAG	5 cut(s)	446, 474, 560, 615, 797
FspI	TGCGCA	1 cut(s)	467
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	3 cut(s)	18, 168, 171
GsuI	CTGGAG	2 cut(s)	261, 729
HaeIII	GGCC	3 cut(s)	5, 17, 267
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	7 cut(s)	10, 138, 235, 345, 466, 578, 733
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	5 cut(s)	380, 396, 677, 711, 791
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	590, 644
Hpy166II	GTNNAC	2 cut(s)	127, 298
Hpy188I	TCNGA	5 cut(s)	76, 337, 348, 395, 496
Hpy188III	TCNNGA	3 cut(s)	106, 446, 746
Hpy8I	GTNNAC	2 cut(s)	127, 298
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	313, 730
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	389, 522
HpyCH4V	TGCA	4 cut(s)	60, 119, 173, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 463, 474
HpyF3I	CTNAG	3 cut(s)	12, 347, 767
HpySE526I	ACGT	2 cut(s)	389, 522
Hsp92II	CATG	7 cut(s)	10, 138, 235, 345, 466, 578, 733
HspAI	GCGC	1 cut(s)	466
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	76, 102, 496, 554
LmnI	GCTCC	2 cut(s)	240, 242
LpnPI	CCDG	9 cut(s)	55, 225, 252, 277, 326, 346, 353, 454, 759
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	5 cut(s)	446, 474, 560, 615, 797
MaeII	ACGT	2 cut(s)	389, 522
MaeIII	GTNAC	2 cut(s)	65, 354
MalI	GATC	4 cut(s)	78, 104, 498, 556
MboI	GATC	4 cut(s)	76, 102, 496, 554
MboII	GAAGA	1 cut(s)	395
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	247, 489
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	429, 687
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	374, 405, 671
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	7 cut(s)	59, 140, 225, 290, 314, 744, 753
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	141, 432
MslI	CAYNNNNRTG	4 cut(s)	361, 573, 579, 728
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	17, 463, 474
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	2 cut(s)	6, 729
NdeII	GATC	4 cut(s)	76, 102, 496, 554
NgoMIV	GCCGGC	1 cut(s)	263
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	7 cut(s)	10, 138, 235, 345, 466, 578, 733
NlaIV	GGNNCC	2 cut(s)	498, 701
NmuCI	GTSAC	2 cut(s)	65, 354
NsbI	TGCGCA	1 cut(s)	467
NspI	RCATGY	2 cut(s)	138, 345
OliI	CACNNNNGTG	1 cut(s)	361
PciI	ACATGT	1 cut(s)	341
PctI	GAATGC	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	711, 791
PkrI	GCNGC	3 cut(s)	19, 169, 172
PleI	GAGTC	3 cut(s)	374, 404, 671
PpsI	GAGTC	3 cut(s)	374, 404, 671
PpuMI	RGGWCCY	1 cut(s)	700
PscI	ACATGT	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	498, 701
PspPI	GGNCC	2 cut(s)	600, 700
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	496
RseI	CAYNNNNRTG	4 cut(s)	361, 573, 579, 728
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	141, 432
SatI	GCNGC	3 cut(s)	18, 168, 171
Sau3AI	GATC	4 cut(s)	76, 102, 496, 554
Sau96I	GGNCC	2 cut(s)	600, 700
SchI	GAGTC	3 cut(s)	374, 405, 671
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	247, 489
SfcI	CTRYAG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	600, 700
SmiMI	CAYNNNNRTG	4 cut(s)	361, 573, 579, 728
Sse9I	AATT	2 cut(s)	429, 687
SsiI	CCGC	2 cut(s)	18, 168
SspMI	CTAG	5 cut(s)	446, 474, 560, 615, 797
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	3 cut(s)	6, 703, 729
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	2 cut(s)	392, 525
TaqI	TCGA	4 cut(s)	87, 126, 319, 383
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	2 cut(s)	429, 687
TauI	GCSGC	2 cut(s)	20, 170
TfiI	GAWTC	2 cut(s)	711, 791
Tru1I	TTAA	2 cut(s)	141, 432
Tru9I	TTAA	2 cut(s)	141, 432
TseFI	GTSAC	2 cut(s)	65, 354
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	2 cut(s)	65, 354
TspDTI	ATGAA	3 cut(s)	39, 712, 827
TspGWI	ACGGA	1 cut(s)	489
VpaK11BI	GGWCC	2 cut(s)	600, 700
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	2 cut(s)	138, 345
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	5 cut(s)	446, 474, 560, 615, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.