Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

29282699 .. 29283982

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTTTTCAAATGTCAATAACGACATGGTGATCACTAAACAGAGAAGACCAAGGTCAAGGTGGTCTGAGTTCCCTACAGAACTATTAGAGTTGATCATGAAAAAGCTTGCTTCTGTGGACATACTTCGCTTTGAAGCTGTCTGTTCTTGTTGGAATCAAGCTGCAAAATCTTATATCTCTGCCCCATATTTCACACTCGACATTCCTCAAACCCCATGGCTTATGATTCCTGGTGGTGAAGAAAACCATGTCCATACTCGCCGCTTCTTCAACCTCGCAGAGTTCAAGTACTACACTATCAAAAACGCGTTTGGAGATATTCCTGATGCCTGGTGTGTCGGTTCATCACATGGGTGGCTGGTCCTTACGGAGGAGAAAGGAACTGCTTGTCTTTTAAATCCGTTTTCTGGAGATAGGATTGAACTCCCATCAATATGGACACTGCATCCAGTCATAAGCAAGGATTATATCGCCAAAGCTGTCACCTCCTCCAAGCCACCATCGTCGTCATCCTCGTCTTCCAGTAAGGACTTCGTTGTTGCAATAATACTCTACTCTAATACGTGGATAACGCAACTTGCTTTCCATAGGCATGGAGACGATGCATGGACTGGCTTCGGCCAGAAGGGTACTGTCTATCATGACGGTATGTTCCACAGTACTAGTGGTCATTTTTTTGCATTGGCAACCGATTGCTCAGTTGAGGTTTGGGACTTGAGGAAATGTTATCCCATAAAAACACTTCATCTGCAACCTTTTCGACACCGCCAATTAAACAATGACGATGATTTCAAATTTGATATTCAGAATTATTTGGTGGAGTCCTTGGGTGAAATTTTGTTGGTGAGGCGATTTATAGTGACGAAAATTTTTTATCATAAGGACCTACCCGATGTTTTTCGTCCCTATAAAACCTCTCACTTTTATATCTACAGGCAGAAGTCCACTAGCTTAGGGTTCGAGTGGGAGAAGGTGGAAAGTTTGCACAATCGGGCTGTGTTTCTGGGTGGAAATCATTCAATGTCGTTATCTTCCCGGAACTTTCCAGAATGTGAAGAGAACTCAATTTACTTCACAGATCATAGGTGGGAAATGAACCCTAATAAATGCTTATCTGGTAAGAAGAGAATTGGCTATGGGGGTCATGATCTTGGAGTGTACAACGTGAAAGATAATATTATGAAGCCAATGCCATGTTATTTGACATTTGATCGCTGGATTATAAATCCACCACCCTTTTGGATTGTTCCTGATATAATCCATGGTTTTGGTAATGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

427

Amino Acids

49.34

Weight (kDa)

8.01

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	89 - 388	1.2e-52	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1223
AccII	CGCG	1 cut(s)	308
AciI	CCGC	2 cut(s)	262, 766
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	3 cut(s)	794, 834, 867
AfaI	GTAC	4 cut(s)	290, 631, 661, 1160
AfiI	CCNNNNNNNGG	2 cut(s)	370, 407
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	7 cut(s)	9, 134, 271, 286, 422, 793, 1020
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	2 cut(s)	229, 329
AleI	CACNNNNGTG	1 cut(s)	352
AluBI	AGCT	6 cut(s)	106, 137, 161, 479, 951, 1281
AluI	AGCT	6 cut(s)	106, 137, 161, 479, 951, 1281
Alw26I	GTCTC	1 cut(s)	591
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	3 cut(s)	794, 834, 867
Asp700I	GAANNNNTTC	1 cut(s)	1015
AspS9I	GGNCC	2 cut(s)	361, 883
AsuC2I	CCSGG	1 cut(s)	1036
AsuHPI	GGTGA	5 cut(s)	40, 248, 475, 842, 856
AvaII	GGWCC	2 cut(s)	361, 883
BbsI	GAAGAC	2 cut(s)	52, 510
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	436, 508
BcgI	CGANNNNNNTGC	2 cut(s)	740, 774
BciT130I	CCWGG	2 cut(s)	231, 331
BclI	TGATCA	2 cut(s)	30, 93
BcnI	CCSGG	1 cut(s)	1036
BcoDI	GTCTC	1 cut(s)	591
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	2 cut(s)	663, 948
BfmI	CTRYAG	2 cut(s)	75, 931
BisI	GCNGC	2 cut(s)	162, 262
BlsI	GCNGC	2 cut(s)	163, 263
BmcAI	AGTACT	2 cut(s)	290, 661
Bme1390I	CCNGG	3 cut(s)	231, 331, 1036
Bme18I	GGWCC	2 cut(s)	361, 883
BmgT120I	GGNCC	2 cut(s)	361, 883
BmrFI	CCNGG	3 cut(s)	231, 331, 1036
BmsI	GCATC	3 cut(s)	316, 454, 592
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	52, 510
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	952
BpuEI	CTTGAG	1 cut(s)	736
BpuMI	CCSGG	1 cut(s)	1036
BsaAI	YACGTR	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	50, 215, 825, 1261
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 407
Bse1I	ACTGG	3 cut(s)	449, 522, 616
BseBI	CCWGG	2 cut(s)	231, 331
BseDI	CCNNGG	4 cut(s)	50, 215, 825, 1261
BseGI	GGATG	2 cut(s)	445, 509
BseLI	CCNNNNNNNGG	2 cut(s)	370, 407
BseMII	CTCAG	2 cut(s)	57, 711
BseNI	ACTGG	3 cut(s)	449, 522, 616
BseRI	GAGGAG	2 cut(s)	386, 478
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	1036
BslFI	GGGAC	2 cut(s)	725, 888
BslI	CCNNNNNNNGG	2 cut(s)	370, 407
BsmAI	GTCTC	1 cut(s)	591
BsmBI	CGTCTC	1 cut(s)	591
BsmFI	GGGAC	2 cut(s)	725, 888
BsnI	GGCC	1 cut(s)	621
Bsp1407I	TGTACA	1 cut(s)	1158
Bsp143I	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
Bsp19I	CCATGG	2 cut(s)	215, 1261
BspACI	CCGC	2 cut(s)	262, 766
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	2 cut(s)	58, 710
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	3 cut(s)	96, 640, 1144
BsrGI	TGTACA	1 cut(s)	1158
BsrI	ACTGG	3 cut(s)	449, 522, 616
BssECI	CCNNGG	4 cut(s)	50, 215, 825, 1261
BssMI	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
BssT1I	CCWWGG	4 cut(s)	50, 215, 825, 1261
Bst2UI	CCWGG	2 cut(s)	231, 331
Bst4CI	ACNGT	3 cut(s)	634, 647, 659
Bst6I	CTCTTC	2 cut(s)	1050, 1118
BstAUI	TGTACA	1 cut(s)	1158
BstBAI	YACGTR	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	66, 697, 952
BstDSI	CCRYGG	2 cut(s)	215, 1261
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	445, 509
BstFNI	CGCG	1 cut(s)	308
BstKTI	GATC	5 cut(s)	33, 96, 1081, 1150, 1213
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
BstNI	CCWGG	2 cut(s)	231, 331
BstPAI	GACNNNNGTC	1 cut(s)	52
BstSCI	CCNGG	3 cut(s)	229, 329, 1034
BstSFI	CTRYAG	2 cut(s)	75, 931
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	52, 510
BstXI	CCANNNNNNTGG	4 cut(s)	435, 593, 1239, 1268
BsuRI	GGCC	1 cut(s)	621
BtgI	CCRYGG	2 cut(s)	215, 1261
BtsCI	GGATG	2 cut(s)	445, 509
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	3 cut(s)	96, 640, 1144
Cfr13I	GGNCC	2 cut(s)	361, 883
Csp6I	GTAC	4 cut(s)	289, 630, 660, 1159
CviQI	GTAC	4 cut(s)	289, 630, 660, 1159
DdeI	CTNAG	3 cut(s)	66, 697, 952
DpnI	GATC	5 cut(s)	32, 95, 1080, 1149, 1212
DpnII	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
DraI	TTTAAA	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	2 cut(s)	1050, 1118
EarI	CTCTTC	2 cut(s)	1050, 1118
Eco130I	CCWWGG	4 cut(s)	50, 215, 825, 1261
Eco47I	GGWCC	2 cut(s)	361, 883
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	229, 329
EcoT14I	CCWWGG	4 cut(s)	50, 215, 825, 1261
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	4 cut(s)	50, 215, 825, 1261
Esp3I	CGTCTC	1 cut(s)	591
FaqI	GGGAC	2 cut(s)	725, 888
FbaI	TGATCA	2 cut(s)	30, 93
Fnu4HI	GCNGC	2 cut(s)	162, 262
FokI	GGATG	2 cut(s)	432, 496
Fsp4HI	GCNGC	2 cut(s)	162, 262
FspBI	CTAG	2 cut(s)	663, 948
GluI	GCNGC	2 cut(s)	162, 262
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	1 cut(s)	1036
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	154, 226, 821
HpaII	CCGG	1 cut(s)	1036
HphI	GGTGA	5 cut(s)	40, 248, 475, 842, 856
Hpy166II	GTNNAC	3 cut(s)	118, 945, 1159
Hpy188I	TCNGA	2 cut(s)	67, 807
Hpy188III	TCNNGA	7 cut(s)	97, 323, 408, 641, 1046, 1145, 1250
Hpy8I	GTNNAC	3 cut(s)	118, 945, 1159
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	2 cut(s)	619, 964
HpyCH4III	ACNGT	3 cut(s)	634, 647, 659
HpyCH4IV	ACGT	2 cut(s)	563, 1164
HpyCH4V	TGCA	7 cut(s)	164, 445, 542, 605, 680, 751, 985
HpyF3I	CTNAG	3 cut(s)	66, 697, 952
HpySE526I	ACGT	2 cut(s)	563, 1164
Ksp22I	TGATCA	2 cut(s)	30, 93
Kzo9I	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	3 cut(s)	316, 454, 592
MaeI	CTAG	2 cut(s)	663, 948
MaeII	ACGT	2 cut(s)	563, 1164
MaeIII	GTNAC	2 cut(s)	481, 859
MalI	GATC	5 cut(s)	32, 95, 1080, 1149, 1212
MboI	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
MboII	GAAGA	7 cut(s)	57, 251, 259, 510, 1023, 1067, 1135
MluCI	AATT	7 cut(s)	770, 794, 808, 834, 867, 1065, 1128
MluI	ACGCGT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	1015
MseI	TTAA	2 cut(s)	395, 773
MslI	CAYNNNNRTG	3 cut(s)	352, 433, 591
MspI	CCGG	1 cut(s)	1036
MspR9I	CCNGG	3 cut(s)	231, 331, 1036
MvaI	CCWGG	2 cut(s)	231, 331
MvnI	CGCG	1 cut(s)	308
NciI	CCSGG	1 cut(s)	1036
NcoI	CCATGG	2 cut(s)	215, 1261
NdeII	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
NmuCI	GTSAC	2 cut(s)	481, 859
NsiI	ATGCAT	1 cut(s)	607
OliI	CACNNNNGTG	1 cut(s)	352
PagI	TCATGA	3 cut(s)	96, 640, 1144
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	1015
PfeI	GAWTC	2 cut(s)	154, 226
PfoI	TCCNGGA	1 cut(s)	1034
PkrI	GCNGC	2 cut(s)	163, 263
PleI	GAGTC	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	829
Ppu21I	YACGTR	1 cut(s)	564
PpuMI	RGGWCCY	1 cut(s)	883
PshAI	GACNNNNGTC	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	1223
Psp5II	RGGWCCY	1 cut(s)	883
Psp6I	CCWGG	2 cut(s)	229, 329
PspGI	CCWGG	2 cut(s)	229, 329
PspPI	GGNCC	2 cut(s)	361, 883
PspPPI	RGGWCCY	1 cut(s)	883
PsrI	GAACNNNNNNTAC	2 cut(s)	1052, 1084
RsaI	GTAC	4 cut(s)	290, 631, 661, 1160
RsaNI	GTAC	4 cut(s)	289, 630, 660, 1159
RseI	CAYNNNNRTG	3 cut(s)	352, 433, 591
SaqAI	TTAA	2 cut(s)	395, 773
SatI	GCNGC	2 cut(s)	162, 262
Sau3AI	GATC	5 cut(s)	30, 93, 1078, 1147, 1210
Sau96I	GGNCC	2 cut(s)	361, 883
ScaI	AGTACT	2 cut(s)	290, 661
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	3 cut(s)	231, 331, 1036
SfaNI	GCATC	3 cut(s)	316, 454, 592
SfcI	CTRYAG	2 cut(s)	75, 931
SinI	GGWCC	2 cut(s)	361, 883
SmiMI	CAYNNNNRTG	3 cut(s)	352, 433, 591
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	7 cut(s)	770, 794, 808, 834, 867, 1065, 1128
SsiI	CCGC	2 cut(s)	262, 766
SspI	AATATT	1 cut(s)	1177
SspMI	CTAG	2 cut(s)	663, 948
StyD4I	CCNGG	3 cut(s)	229, 329, 1034
StyI	CCWWGG	4 cut(s)	50, 215, 825, 1261
TaaI	ACNGT	3 cut(s)	634, 647, 659
TaiI	ACGT	2 cut(s)	566, 1167
TaqI	TCGA	3 cut(s)	198, 760, 960
TasI	AATT	7 cut(s)	770, 794, 808, 834, 867, 1065, 1128
TatI	WGTACW	3 cut(s)	288, 659, 1158
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	154, 226
Tru1I	TTAA	2 cut(s)	395, 773
Tru9I	TTAA	2 cut(s)	395, 773
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	481, 859
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	2 cut(s)	481, 859
TspDTI	ATGAA	5 cut(s)	113, 333, 734, 1109, 1196
TspGWI	ACGGA	2 cut(s)	383, 390
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	361, 883
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	3 cut(s)	794, 834, 867
XcmI	CCANNNNNNNNNTGG	3 cut(s)	57, 662, 1236
XmnI	GAANNNNTTC	1 cut(s)	1015
XspI	CTAG	2 cut(s)	663, 948
ZrmI	AGTACT	2 cut(s)	290, 661
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.