Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Forward (+)

12211760 .. 12212986

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAACCAAAATAGGAGGAGGATGCCAACTACAACGCCAAACTGGTGCGATCTCCCATTAGAACTGTTAGAGCTGATCTCGAAGAAGCTTGCTTTCATCGACCTAGTTCGATTCAAATCCGTCTGTTCTTGTTGGAAAAGCGCTGCAGAATCTTATACCTCTTCACCAAATCATACACCTGCGCCTGAAGCTCCGTGGCTCATGGTCCCTCTCCCTCCTGATCATCAACGAGTACAGACAGGTGATAAGGATGCTCACTACTTCTGGTTCTTTAGCCTCACAGAGAAAAAGTTTCATAAGATCAAGACCTCTTTTGAAGGCTTTGATTATCCTTACGTAACATTTGCGGGTTCCTCACATGGATGGCTTGCGATTTGCGACTTCAACAAGGCAATGGTTTATCTTCTCAATCCGGTTTCGGGATCTAGAATCGATCTCCCATCGATTTCGACTCTTCCTAACATTGTTGAAGGATGCAATCCGAAAGTTTTCCGAGTTGTGCCCTCCTCCGACCCGTCTCGCAACAAGAAATTTTTTATTGTGGTGAAATACGTTAGTAGAATATTGTCTCCTCACAGTAAACTAGCTTTTTGTAAGAATGGAGATGAAAAATGGACCTACTTAGGCGGTGGTCGGTTATGTTTTACATTCCACAAAGGCCATTTGTATGCATTACGCAAGGAAACCCTTGAGGTTTGGGACTTGGGAGGAACTTATCCCATGAAAACAGTGGATTTTCGCCCTGTATTAGGGAGTGTGGTTACAGGAGTGAATTTCTTGGAGTCAACAGTAGTGAATATTGTGGACTCACTGGGTGAACTTTATTTGTTTGGGAAGAATATTCGCTGCGGTAAGACCATATCAAAGGAGGATTTCCATATCTGCAAGTTAAATTTCACCGCCAAGGAGTGGGAGAAAGTGGAATGTTTGAATGATCAAGCTATATTTTGTAATCATGCTGACGGAGTGAGGTTATTATCAACTCGGAATCTCCCAGAACTTGAAGAAAACTCAATATACTTCACTGACTGGCGAGAGTATGATGTGAGTGGATTACTATTCAGCTTGGAAAGTCAAGTTACTAAGGAGTACTGTAACTTTCGCTGGATGGGTGTTGCTCAACCTTGTGTTTGGATTGTTCCTAATCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

385

Amino Acids

44.03

Weight (kDa)

8.32

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 51	1.2e-07	F-box domain
Beta-prop_KIB1-4	PF03478	90 - 349	2.9e-42	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	909
AciI	CCGC	4 cut(s)	347, 627, 849, 900
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	3 cut(s)	530, 772, 892
AcuI	CTGAAG	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	815
AfaI	GTAC	2 cut(s)	234, 1091
AfeI	AGCGCT	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	419, 749, 909
AgsI	TTSAA	6 cut(s)	115, 317, 385, 470, 931, 1004
AluBI	AGCT	6 cut(s)	73, 88, 191, 587, 941, 1065
AluI	AGCT	6 cut(s)	73, 88, 191, 587, 941, 1065
Alw26I	GTCTC	2 cut(s)	522, 573
AlwI	GGATC	1 cut(s)	430
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	658
ApeKI	GCWGC	2 cut(s)	143, 846
ApoI	RAATTY	3 cut(s)	530, 772, 892
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	2 cut(s)	143, 184
AspS9I	GGNCC	2 cut(s)	205, 615
AsuHPI	GGTGA	5 cut(s)	156, 254, 556, 827, 889
AvaII	GGWCC	2 cut(s)	205, 615
BaeGI	GKGCMC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	130, 833
BccI	CCATC	3 cut(s)	357, 448, 1102
BclI	TGATCA	2 cut(s)	220, 934
BcoDI	GTCTC	2 cut(s)	522, 573
BfaI	CTAG	3 cut(s)	104, 426, 584
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	144, 847
BlsI	GCNGC	2 cut(s)	145, 848
BmcAI	AGTACT	1 cut(s)	1091
Bme18I	GGWCC	2 cut(s)	205, 615
BmgT120I	GGNCC	2 cut(s)	205, 615
BmiI	GGNNCC	2 cut(s)	207, 352
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	3 cut(s)	12, 241, 464
BmuI	ACTGGG	1 cut(s)	821
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuEI	CTTGAG	1 cut(s)	710
Bsa29I	ATCGAT	2 cut(s)	432, 443
BsaAI	YACGTR	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	194, 903, 1148
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	3 cut(s)	419, 749, 909
Bse1I	ACTGG	3 cut(s)	47, 816, 1034
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	115
BseCI	ATCGAT	2 cut(s)	432, 443
BseDI	CCNNGG	3 cut(s)	194, 903, 1148
BseGI	GGATG	5 cut(s)	27, 256, 368, 479, 1113
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	3 cut(s)	419, 749, 909
BseMI	GCAATG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	47, 816, 1034
BseRI	GAGGAG	3 cut(s)	31, 496, 561
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	2 cut(s)	130, 833
BshFI	GGCC	1 cut(s)	660
BshVI	ATCGAT	2 cut(s)	432, 443
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	191, 713
BslI	CCNNNNNNNGG	3 cut(s)	419, 749, 909
BsmAI	GTCTC	2 cut(s)	522, 573
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	191, 713
BsnI	GGCC	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
BspACI	CCGC	4 cut(s)	347, 627, 849, 900
BspANI	GGCC	1 cut(s)	660
BspDI	ATCGAT	2 cut(s)	432, 443
BspLI	GGNNCC	2 cut(s)	207, 352
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	3 cut(s)	47, 816, 1034
BssECI	CCNNGG	3 cut(s)	194, 903, 1148
BssMI	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
BssT1I	CCWWGG	2 cut(s)	903, 1148
Bst4CI	ACNGT	5 cut(s)	66, 578, 730, 790, 1094
Bst6I	CTCTTC	2 cut(s)	166, 459
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	90, 369
BstDEI	CTNAG	2 cut(s)	622, 1083
BstDSI	CCRYGG	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	747
BstF5I	GGATG	5 cut(s)	27, 256, 368, 479, 1113
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 184
BstKTI	GATC	7 cut(s)	52, 78, 223, 303, 425, 436, 937
BstMAI	GTCTC	2 cut(s)	522, 573
BstMBI	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	504
BstSNI	TACGTA	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	130, 833
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu15I	ATCGAT	2 cut(s)	432, 443
BsuRI	GGCC	1 cut(s)	660
BsuTUI	ATCGAT	2 cut(s)	432, 443
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	5 cut(s)	27, 256, 368, 479, 1113
BtsIMutI	CAGTG	3 cut(s)	735, 809, 1023
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	90, 369
CfoI	GCGC	2 cut(s)	143, 184
Cfr13I	GGNCC	2 cut(s)	205, 615
ClaI	ATCGAT	2 cut(s)	432, 443
Csp6I	GTAC	2 cut(s)	233, 1090
CviAII	CATG	4 cut(s)	202, 359, 721, 956
CviQI	GTAC	2 cut(s)	233, 1090
DdeI	CTNAG	2 cut(s)	622, 1083
DpnI	GATC	7 cut(s)	51, 77, 222, 302, 424, 435, 936
DpnII	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
DraIII	CACNNNGTG	1 cut(s)	815
Eam1104I	CTCTTC	2 cut(s)	166, 459
EarI	CTCTTC	2 cut(s)	166, 459
Eco105I	TACGTA	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	903, 1148
Eco47I	GGWCC	2 cut(s)	205, 615
Eco47III	AGCGCT	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	903, 1148
EcoT22I	ATGCAT	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	903, 1148
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	4 cut(s)	205, 362, 724, 959
FaqI	GGGAC	2 cut(s)	191, 713
FatI	CATG	4 cut(s)	201, 358, 720, 955
FauI	CCCGC	1 cut(s)	340
FbaI	TGATCA	2 cut(s)	220, 934
Fnu4HI	GCNGC	2 cut(s)	144, 847
FokI	GGATG	5 cut(s)	34, 263, 375, 486, 1120
Fsp4HI	GCNGC	2 cut(s)	144, 847
FspBI	CTAG	3 cut(s)	104, 426, 584
GlaI	GCGC	2 cut(s)	142, 183
GluI	GCNGC	2 cut(s)	144, 847
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	2 cut(s)	143, 184
Hin1II	CATG	4 cut(s)	205, 362, 724, 959
Hin6I	GCGC	2 cut(s)	141, 182
HinP1I	GCGC	2 cut(s)	141, 182
HincII	GTYRAC	1 cut(s)	786
HindII	GTYRAC	1 cut(s)	786
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	7 cut(s)	111, 149, 429, 451, 782, 806, 988
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	5 cut(s)	156, 254, 556, 827, 889
Hpy166II	GTNNAC	4 cut(s)	581, 786, 805, 818
Hpy188I	TCNGA	4 cut(s)	483, 494, 511, 987
Hpy188III	TCNNGA	5 cut(s)	79, 218, 304, 420, 426
Hpy8I	GTNNAC	4 cut(s)	581, 786, 805, 818
HpyAV	CCTTC	2 cut(s)	311, 464
HpyCH4III	ACNGT	5 cut(s)	66, 578, 730, 790, 1094
HpyCH4IV	ACGT	2 cut(s)	336, 552
HpyCH4V	TGCA	4 cut(s)	146, 477, 671, 885
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	622, 1083
HpySE526I	ACGT	2 cut(s)	336, 552
Hsp92II	CATG	4 cut(s)	205, 362, 724, 959
HspAI	GCGC	2 cut(s)	141, 182
Ksp22I	TGATCA	2 cut(s)	220, 934
Kzo9I	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	2 cut(s)	130, 833
LweI	GCATC	3 cut(s)	12, 241, 464
MaeI	CTAG	3 cut(s)	104, 426, 584
MaeII	ACGT	2 cut(s)	336, 552
MaeIII	GTNAC	4 cut(s)	337, 760, 1078, 1094
MalI	GATC	7 cut(s)	51, 77, 222, 302, 424, 435, 936
MboI	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
MboII	GAAGA	6 cut(s)	94, 153, 395, 446, 847, 1016
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	3 cut(s)	530, 772, 892
MlyI	GAGTC	3 cut(s)	445, 791, 800
MmeI	TCCRAC	2 cut(s)	113, 534
Mph1103I	ATGCAT	1 cut(s)	673
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	890
MslI	CAYNNNNRTG	2 cut(s)	361, 666
MspI	CCGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
NlaIII	CATG	4 cut(s)	205, 362, 724, 959
NlaIV	GGNNCC	2 cut(s)	207, 352
NsiI	ATGCAT	1 cut(s)	673
PaqCI	CACCTGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	111, 149, 429, 988
PflMI	CCANNNNNTGG	1 cut(s)	909
PkrI	GCNGC	2 cut(s)	145, 848
PleI	GAGTC	3 cut(s)	445, 790, 800
PpsI	GAGTC	3 cut(s)	445, 790, 800
Ppu21I	YACGTR	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	207, 352
PspPI	GGNCC	2 cut(s)	205, 615
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	2 cut(s)	234, 1091
RsaNI	GTAC	2 cut(s)	233, 1090
RseI	CAYNNNNRTG	2 cut(s)	361, 666
SaqAI	TTAA	1 cut(s)	890
SatI	GCNGC	2 cut(s)	144, 847
Sau3AI	GATC	7 cut(s)	49, 75, 220, 300, 422, 433, 934
Sau96I	GGNCC	2 cut(s)	205, 615
ScaI	AGTACT	1 cut(s)	1091
SchI	GAGTC	3 cut(s)	445, 791, 800
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	3 cut(s)	12, 241, 464
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	2 cut(s)	205, 615
SmiMI	CAYNNNNRTG	2 cut(s)	361, 666
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SnaBI	TACGTA	1 cut(s)	337
Sse9I	AATT	3 cut(s)	530, 772, 892
SsiI	CCGC	4 cut(s)	347, 627, 849, 900
SspI	AATATT	3 cut(s)	564, 799, 841
SspMI	CTAG	3 cut(s)	104, 426, 584
StyI	CCWWGG	2 cut(s)	903, 1148
TaaI	ACNGT	5 cut(s)	66, 578, 730, 790, 1094
TaiI	ACGT	2 cut(s)	339, 555
TaqI	TCGA	6 cut(s)	80, 99, 109, 432, 443, 449
TasI	AATT	3 cut(s)	530, 772, 892
TatI	WGTACW	2 cut(s)	232, 1089
TfiI	GAWTC	4 cut(s)	111, 149, 429, 988
Tru1I	TTAA	1 cut(s)	890
Tru9I	TTAA	1 cut(s)	890
TscAI	CASTG	3 cut(s)	735, 816, 1030
TseI	GCWGC	2 cut(s)	143, 846
TspDTI	ATGAA	5 cut(s)	17, 85, 284, 621, 737
TspGWI	ACGGA	3 cut(s)	109, 183, 978
TspRI	CASTG	3 cut(s)	735, 816, 1030
Van91I	CCANNNNNTGG	1 cut(s)	909
VpaK11BI	GGWCC	2 cut(s)	205, 615
XagI	CCTNNNNNAGG	1 cut(s)	747
XapI	RAATTY	3 cut(s)	530, 772, 892
XbaI	TCTAGA	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	104, 426, 584
ZrmI	AGTACT	1 cut(s)	1091
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.