Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

12790 .. 13155

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggtctctataaaacccatagaggtgaacgtgaagaacttgcaattggagaaggtggaatgtttgcatgatcgggttttatttttgggcggaaatcaatcactgtcattatccactcgggattttccggcacttcaagataattctgtttacttcacggatgatcgctggtctatgatgaattttaattactactatcttggtgagggtgagaagggttctcataataattatggtggccatgatgttggagtatacagtttagaagatggagttgtgaagctatttgatcaaattgataatcggcagatcatttatatcctccacccttttggattcttccttgtccctaatcaatatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

121

Amino Acids

14.02

Weight (kDa)

4.98

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	37, 215, 221
AvaI	CYCGRG	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	240
BccI	CCATC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	10
BseGI	GGATG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	70, 163, 289, 309
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	10
BssMI	GATC	4 cut(s)	70, 163, 289, 309
BssNAI	GTATAC	1 cut(s)	256
Bst1107I	GTATAC	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	105, 260
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	4 cut(s)	73, 166, 292, 312
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	4 cut(s)	70, 163, 289, 309
BstXI	CCANNNNNNTGG	2 cut(s)	248, 332
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	101
CviAII	CATG	2 cut(s)	68, 242
CviJI	RGCY	2 cut(s)	240, 283
CviKI_1	RGCY	2 cut(s)	240, 283
DpnI	GATC	4 cut(s)	72, 165, 291, 311
DpnII	GATC	4 cut(s)	70, 163, 289, 309
EaeI	YGGCCR	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	117
FaeI	CATG	2 cut(s)	71, 245
FaiI	YATR	9 cut(s)	11, 20, 69, 176, 225, 234, 243, 256, 318
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	67, 241
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	255
FokI	GGATG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	2 cut(s)	71, 245
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	3 cut(s)	37, 215, 221
Hpy166II	GTNNAC	3 cut(s)	28, 151, 256
Hpy188III	TCNNGA	2 cut(s)	119, 137
Hpy8I	GTNNAC	3 cut(s)	28, 151, 256
HpyAV	CCTTC	2 cut(s)	46, 208
HpyCH4III	ACNGT	2 cut(s)	105, 260
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	43, 67
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	71, 245
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	70, 163, 289, 309
LpnPI	CCDG	2 cut(s)	141, 154
MaeII	ACGT	1 cut(s)	30
MalI	GATC	4 cut(s)	72, 165, 291, 311
MboI	GATC	4 cut(s)	70, 163, 289, 309
MboII	GAAGA	3 cut(s)	46, 278, 331
MfeI	CAATTG	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	6 cut(s)	44, 142, 181, 187, 229, 294
MluNI	TGGCCA	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	16, 199, 332
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	240
MspI	CCGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	44
NdeII	GATC	4 cut(s)	70, 163, 289, 309
NlaIII	CATG	2 cut(s)	71, 245
PfeI	GAWTC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	4 cut(s)	70, 163, 289, 309
SetI	ASST	4 cut(s)	27, 33, 57, 285
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	6 cut(s)	44, 142, 181, 187, 229, 294
SsiI	CCGC	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	105, 260
TaiI	ACGT	1 cut(s)	33
TasI	AATT	6 cut(s)	44, 142, 181, 187, 229, 294
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.