Rw3G003280

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
2839473 .. 2840762
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003280.1

Sequence Viewer

Length: 1290 bp
ATGTTCCCCTCTTGGTTCAAAAAGAGAAAGAGAGATCCACGGTCAACAGTGGTCGAGAATAAGAGCACAAAAAGGAGAAAGAGAACAAATACATCATGGTCATCATCAAAGTGGTCCGAGCTTCAACCAGAATTGCTGGAGATGATCATAAAAAGACTCTCTTTCGTCGGCATGCTTCGTTTCAAAGCTGTCTGTTCTTCTTGGAACTCCATTGCACGATCCTACGCTGCTTCGATTATAAACCAAACTCCATGGCTCACTCTCCCTAGTGATGATGACCACACTCGCCGCTTCTATAGCCTTGAAGAGAAAAAGGTTTACACTGTTAAGAACTCGTTTCAAGACTTTCCTGGTGCTAGCTGGTGTGTGGGTTCATCTCATGGGTGGTTGGTGATTTTGGACGAACCAAACAATATCCCACTTCTGTTTAACCCGATTTCTGAAAATAGATCAATGGAGCTCCCACATATCCCAAGCACTACAAATTCCTTGCTTGGTTCCCCTCCCTTCTACCATGTTGCTAAAGCTGTCCTCTCCTCCGACCCGTCTTGCAACAACAACTTCTCCGTTGCAATAATCTACGGTATCCAACCATCAAGACTTGCATTCTACAACCGTGGAGACGAGGAATGGACCGACTTAAATGGTGAGCATCAAGAATATTGTGACATTATATTCCACAATGACAAATTATTTGCATTGGCCGACAATGGATGTGTTGAAGCTTGGGACTTTAGGAAACCCTCTCCCAAAAAGATCATAAATCTTCAACCTGCTTCTGCCAAAGAGTTGGATCTGGATTACACTTCCAATCGCGACAAGTTTTCCACAAATACTTACTTGGTGGAGTCATCGGATGAGATAATGTCTGTGGTGCGGTGTATAGGGAACTTTGTCAATGAGGAGGGCAAAGCTATCCATGAGATAGACGTTCCTGACGAGCCCAACAGTCCTTGTCCCTATAGGACATTGCAATTTTATGTCTTCAAGCTAAATTTTGCGGCGAACAAGTGGGAGAAAGTGGAGTGTTTGCCGAACTGTGCTTTGTTTTTGGGCGGTAGCCAATCAATATCATTGTCCACTAAAGATGTTTCAGGGTGCGAAGAAAACTCAATTTACTTCACAGATGATCGTTGGGATGAGATAGAACTGCTTGGTGATACTGACTCCTATGGCGGCCATGACATGGGAGTGTACAACTTGGAAGACAAAGTCGTGAAGCAATTTTTTCCATTTGATAAATGGAGAATTGATCCACCACCTTTTTGGATTGTTCCTAGTCCATGGTGA

Protein Analysis

429

Amino Acids

49.28

Weight (kDa)

5.43

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 38 - 74 3.2e-06 F-box domain
Beta-prop_KIB1-4 PF03478 98 - 400 1.7e-55 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000700)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 1186
AccII CGCG 1 cut(s) 816
AciI CCGC 5 cut(s) 289, 877, 1001, 1056, 1176
AclWI GGATC 4 cut(s) 29, 213, 801, 1247
AcoI YGGCCR 2 cut(s) 702, 1177
AcsI RAATTY 2 cut(s) 484, 994
AfaI GTAC 1 cut(s) 1196
AfiI CCNNNNNNNGG 1 cut(s) 1186
AgsI TTSAA 8 cut(s) 19, 125, 184, 305, 341, 722, 770, 988
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 8 cut(s) 121, 188, 360, 460, 527, 725, 914, 991
AluI AGCT 8 cut(s) 121, 188, 360, 460, 527, 725, 914, 991
Alw21I GWGCWC 2 cut(s) 68, 462
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 4 cut(s) 29, 213, 801, 1247
AoxI GGCC 2 cut(s) 702, 1177
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 484, 994
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
AspS9I GGNCC 2 cut(s) 114, 633
AsuHPI GGTGA 3 cut(s) 403, 659, 1169
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 2 cut(s) 114, 633
BanII GRGCYC 2 cut(s) 462, 945
BbsI GAAGAC 2 cut(s) 976, 1212
Bbv12I GWGCWC 2 cut(s) 68, 462
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 596
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 3 cut(s) 267, 357, 1278
BfmI CTRYAG 2 cut(s) 295, 961
BfuAI ACCTGC 1 cut(s) 781
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 4 cut(s) 228, 289, 1002, 1177
BlsI GCNGC 4 cut(s) 229, 290, 1003, 1178
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 114, 633
BmgT120I GGNCC 2 cut(s) 114, 633
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 661
BmtI GCTAGC 1 cut(s) 360
BpiI GAAGAC 2 cut(s) 976, 1212
BpmI CTGGAG 1 cut(s) 158
BsaJI CCNNGG 4 cut(s) 38, 251, 616, 1283
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 1 cut(s) 1186
Bse3DI GCAATG 2 cut(s) 210, 968
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 4 cut(s) 38, 251, 616, 1283
BseGI GGATG 3 cut(s) 719, 862, 1144
BseLI CCNNNNNNNGG 1 cut(s) 1186
BseMI GCAATG 2 cut(s) 210, 968
BseRI GAGGAG 2 cut(s) 526, 917
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 2 cut(s) 704, 1179
BsiHKAI GWGCWC 2 cut(s) 68, 462
BslFI GGGAC 2 cut(s) 743, 942
BslI CCNNNNNNNGG 1 cut(s) 1186
BsmAI GTCTC 1 cut(s) 615
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 743, 942
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 2 cut(s) 704, 1179
Bsp1286I GDGCHC 3 cut(s) 68, 462, 945
Bsp1407I TGTACA 1 cut(s) 1194
Bsp143I GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
Bsp19I CCATGG 2 cut(s) 251, 1283
Bsp68I TCGCGA 1 cut(s) 816
BspACI CCGC 5 cut(s) 289, 877, 1001, 1056, 1176
BspANI GGCC 2 cut(s) 704, 1179
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 781
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 4 cut(s) 29, 213, 801, 1247
BsrDI GCAATG 2 cut(s) 210, 968
BsrGI TGTACA 1 cut(s) 1194
BssECI CCNNGG 4 cut(s) 38, 251, 616, 1283
BssMI GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
BssT1I CCWWGG 2 cut(s) 251, 1283
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 7 cut(s) 42, 49, 325, 584, 617, 950, 1040
Bst6I CTCTTC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 1194
BstC8I GCNNGC 2 cut(s) 173, 358
BstDSI CCRYGG 4 cut(s) 38, 251, 616, 1283
BstF5I GGATG 3 cut(s) 719, 862, 1144
BstFNI CGCG 1 cut(s) 816
BstKTI GATC 8 cut(s) 37, 147, 221, 452, 759, 796, 1132, 1255
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 295, 961
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 1 cut(s) 214
BstV2I GAAGAC 2 cut(s) 976, 1212
BstX2I RGATCY 2 cut(s) 34, 793
BstXI CCANNNNNNTGG 2 cut(s) 790, 1266
BstYI RGATCY 2 cut(s) 34, 793
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 2 cut(s) 704, 1179
BtgI CCRYGG 4 cut(s) 38, 251, 616, 1283
BtsCI GGATG 3 cut(s) 719, 862, 1144
BtsIMutI CAGTG 2 cut(s) 54, 321
BtuMI TCGCGA 1 cut(s) 816
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 2 cut(s) 173, 358
Cfr13I GGNCC 2 cut(s) 114, 633
Csp6I GTAC 1 cut(s) 1195
CviAII CATG 9 cut(s) 96, 172, 252, 380, 515, 920, 1181, 1186, 1284
CviQI GTAC 1 cut(s) 1195
DpnI GATC 8 cut(s) 36, 146, 220, 451, 758, 795, 1131, 1254
DpnII GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
EaeI YGGCCR 2 cut(s) 702, 1177
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 251, 1283
Eco24I GRGCYC 2 cut(s) 462, 945
Eco47I GGWCC 2 cut(s) 114, 633
Eco53kI GAGCTC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 251, 1283
EcoT38I GRGCYC 2 cut(s) 462, 945
ErhI CCWWGG 2 cut(s) 251, 1283
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 9 cut(s) 99, 175, 255, 383, 518, 923, 1184, 1189, 1287
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FaqI GGGAC 2 cut(s) 743, 942
FatI CATG 9 cut(s) 95, 171, 251, 379, 514, 919, 1180, 1185, 1283
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 228, 289, 1002, 1177
FokI GGATG 3 cut(s) 726, 869, 1151
FriOI GRGCYC 2 cut(s) 462, 945
Fsp4HI GCNGC 4 cut(s) 228, 289, 1002, 1177
FspBI CTAG 3 cut(s) 267, 357, 1278
GluI GCNGC 4 cut(s) 228, 289, 1002, 1177
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 2 cut(s) 704, 1179
Hin1II CATG 9 cut(s) 99, 175, 255, 383, 518, 923, 1184, 1189, 1287
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 3 cut(s) 156, 848, 1166
HphI GGTGA 3 cut(s) 403, 659, 1169
Hpy166II GTNNAC 4 cut(s) 45, 319, 1080, 1195
Hpy188I TCNGA 4 cut(s) 118, 442, 541, 856
Hpy188III TCNNGA 8 cut(s) 55, 341, 597, 656, 797, 815, 935, 1216
Hpy8I GTNNAC 4 cut(s) 45, 319, 1080, 1195
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 7 cut(s) 42, 49, 325, 584, 617, 950, 1040
HpyCH4IV ACGT 1 cut(s) 930
HpyCH4V TGCA 6 cut(s) 215, 552, 572, 605, 698, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 930
Hsp92II CATG 9 cut(s) 99, 175, 255, 383, 518, 923, 1184, 1189, 1287
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
LmnI GCTCC 2 cut(s) 457, 465
LpnPI CCDG 9 cut(s) 122, 141, 336, 346, 363, 782, 786, 948, 1080
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 661
MaeI CTAG 3 cut(s) 267, 357, 1278
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 1 cut(s) 665
MalI GATC 8 cut(s) 36, 146, 220, 451, 758, 795, 1131, 1254
MboI GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
MboII GAAGA 6 cut(s) 189, 317, 758, 976, 1115, 1217
MflI RGATCY 2 cut(s) 34, 793
MhlI GDGCHC 3 cut(s) 68, 462, 945
MluCI AATT 8 cut(s) 131, 484, 689, 974, 994, 1113, 1223, 1248
MlyI GAGTC 3 cut(s) 150, 857, 1160
MmeI TCCRAC 3 cut(s) 564, 613, 771
MnlI CCTC 8 cut(s) 19, 513, 542, 547, 619, 754, 895, 898
MseI TTAA 3 cut(s) 327, 429, 641
MslI CAYNNNNRTG 2 cut(s) 109, 1190
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 1 cut(s) 297
NcoI CCATGG 2 cut(s) 251, 1283
NdeII GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 9 cut(s) 99, 175, 255, 383, 518, 923, 1184, 1189, 1287
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 665
NruI TCGCGA 1 cut(s) 816
NspI RCATGY 1 cut(s) 175
PaeI GCATGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PctI GAATGC 1 cut(s) 605
PflFI GACNNNGTC 1 cut(s) 1211
PflMI CCANNNNNTGG 1 cut(s) 1186
PkrI GCNGC 4 cut(s) 229, 290, 1003, 1178
PleI GAGTC 3 cut(s) 150, 856, 1160
PpsI GAGTC 3 cut(s) 150, 856, 1160
PsiI TTATAA 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 114, 633
PsuI RGATCY 2 cut(s) 34, 793
PsyI GACNNNGTC 1 cut(s) 1211
RruI TCGCGA 1 cut(s) 816
RsaI GTAC 1 cut(s) 1196
RsaNI GTAC 1 cut(s) 1195
RseI CAYNNNNRTG 2 cut(s) 109, 1190
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 3 cut(s) 327, 429, 641
SatI GCNGC 4 cut(s) 228, 289, 1002, 1177
Sau3AI GATC 8 cut(s) 34, 144, 218, 449, 756, 793, 1129, 1252
Sau96I GGNCC 2 cut(s) 114, 633
SchI GAGTC 3 cut(s) 150, 857, 1160
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 3 cut(s) 68, 462, 945
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 2 cut(s) 295, 961
SinI GGWCC 2 cut(s) 114, 633
SmiMI CAYNNNNRTG 2 cut(s) 109, 1190
SphI GCATGC 1 cut(s) 175
Sse9I AATT 8 cut(s) 131, 484, 689, 974, 994, 1113, 1223, 1248
SsiI CCGC 5 cut(s) 289, 877, 1001, 1056, 1176
SspI AATATT 1 cut(s) 662
SspMI CTAG 3 cut(s) 267, 357, 1278
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 2 cut(s) 251, 1283
TaaI ACNGT 7 cut(s) 42, 49, 325, 584, 617, 950, 1040
TaiI ACGT 1 cut(s) 933
TaqI TCGA 2 cut(s) 54, 233
TaqII GACCGA 1 cut(s) 650
TasI AATT 8 cut(s) 131, 484, 689, 974, 994, 1113, 1223, 1248
TatI WGTACW 1 cut(s) 1194
TauI GCSGC 3 cut(s) 291, 1004, 1179
Tru1I TTAA 3 cut(s) 327, 429, 641
Tru9I TTAA 3 cut(s) 327, 429, 641
TscAI CASTG 2 cut(s) 54, 328
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 2 cut(s) 54, 328
Tth111I GACNNNGTC 1 cut(s) 1211
Van91I CCANNNNNTGG 1 cut(s) 1186
VpaK11BI GGWCC 2 cut(s) 114, 633
XapI RAATTY 2 cut(s) 484, 994
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 2 cut(s) 1239, 1263
XspI CTAG 3 cut(s) 267, 357, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.