Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

34296776 .. 34298040

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCGAGGAAGAAAAAATCAGGACGGAATCAAGACGGAACTGGTCAGAGCTCCGATTAGAGCTACTAGAGTTAATCTTGAAAAGACTTGCTCTCGTTGACATGGCTCGCTTTAAACTCGTTTCTAAATCCTGGTATGCCGCTGCAAAATCATATATCTCTAGCCCTGTAACTTACAAACCCTTGGTGCCTCAAGCTCCATGGCTCCTGCTCCCTCGACGACGTAGTGACGGTGATGATGGCCGCTTCTTTAGCCTCTCAGAGAAAAAAGTTTACATCTTTAGGAACCTGTTTGAAGGCTTTGGCGATCATGAACTGTTGGGTTCTTCACATGGGTGGCTGGTGATGTGGGACTCCAACCTACTCAGAATACACCTTTTCAACCCCATCTCTAGGGTTAGAATTCTACTCCCACCTCTAGGGTTTCAGGGCATTCTCAGCGCTTTCTTATCCTCGGATCCGTCTTGCAACAGCACCTTTTACGTTGTGGTAGTTTACACAGAGAAAGAAGATACAAGAATAGCATTCCATAAGCATAGTGATGATCAAAACAACACTGCTACTTGGACTGACTTGGATAGTGTAGATGGAGGATTTGGTGAGATTTTTTTCCACCACAGCCTTCTGTTGGGAATGTCTTTAGACTCGAATTCAATTAGAGTTTGCGATTTCGGGGCAACCACCTCTCGCATCAAAACTATTGATTTCCAACCTCCTGAGAGGGATGCAGAACAACTTAATTATGGACGTTTATTTGGTGGAATCACAAGGGAGAACACAGTGAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

264

Amino Acids

30.18

Weight (kDa)

6.4

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 51	3.1e-06	F-box domain
Beta-prop_KIB1-4	PF03478	83 - 239	1.3e-21	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AciI	CCGC	2 cut(s)	141, 244
AclWI	GGATC	2 cut(s)	452, 465
AcoI	YGGCCR	2 cut(s)	3, 241
AcsI	RAATTY	2 cut(s)	402, 649
AfeI	AGCGCT	1 cut(s)	442
AfiI	CCNNNNNNNGG	3 cut(s)	393, 419, 628
AgsI	TTSAA	4 cut(s)	82, 296, 382, 654
AjnI	CCWGG	1 cut(s)	131
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	3 cut(s)	52, 64, 197
AluI	AGCT	3 cut(s)	52, 64, 197
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	452, 465
Aor51HI	AGCGCT	1 cut(s)	442
AoxI	GGCC	2 cut(s)	3, 241
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	402, 649
AspLEI	GCGC	1 cut(s)	443
AsuHPI	GGTGA	3 cut(s)	245, 355, 611
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	233, 395, 581
BciT130I	CCWGG	1 cut(s)	133
BclI	TGATCA	1 cut(s)	544
BfaI	CTAG	4 cut(s)	68, 162, 393, 419
BfoI	RGCGCY	1 cut(s)	444
BisI	GCNGC	3 cut(s)	141, 144, 244
BlsI	GCNGC	3 cut(s)	142, 145, 245
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	4 cut(s)	189, 206, 287, 459
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	699, 715
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	6, 183, 200, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	393, 419, 628
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	4 cut(s)	6, 183, 200, 453
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	393, 419, 628
BseMII	CTCAG	4 cut(s)	273, 379, 451, 708
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	5, 243
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	3 cut(s)	393, 419, 628
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	2 cut(s)	432, 524
BsnI	GGCC	2 cut(s)	5, 243
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	307, 457, 544
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	2 cut(s)	141, 244
BspANI	GGCC	2 cut(s)	5, 243
BspCNI	CTCAG	4 cut(s)	272, 378, 450, 709
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	4 cut(s)	189, 206, 287, 459
BspPI	GGATC	2 cut(s)	452, 465
BspT107I	GGYRCC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	4 cut(s)	6, 183, 200, 453
BssMI	GATC	3 cut(s)	307, 457, 544
BssT1I	CCWWGG	2 cut(s)	183, 200
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	3 cut(s)	233, 318, 781
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	259, 365, 437, 717
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	730
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	3 cut(s)	310, 460, 547
BstMBI	GATC	3 cut(s)	307, 457, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 438
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	5, 243
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	555, 786
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	443
CviAII	CATG	4 cut(s)	103, 201, 311, 332
DdeI	CTNAG	4 cut(s)	259, 365, 437, 717
DpnI	GATC	3 cut(s)	309, 459, 546
DpnII	GATC	3 cut(s)	307, 457, 544
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	3, 241
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	183, 200
Eco24I	GRGCYC	1 cut(s)	54
Eco47III	AGCGCT	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoRI	GAATTC	2 cut(s)	402, 649
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	183, 200
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	183, 200
FaeI	CATG	4 cut(s)	106, 204, 314, 335
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	4 cut(s)	102, 200, 310, 331
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	141, 144, 244
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	141, 144, 244
FspBI	CTAG	4 cut(s)	68, 162, 393, 419
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	3 cut(s)	141, 144, 244
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	5, 243
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	4 cut(s)	106, 204, 314, 335
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	29, 353, 644, 762
HphI	GGTGA	3 cut(s)	245, 355, 611
Hpy166II	GTNNAC	3 cut(s)	100, 274, 496
Hpy188I	TCNGA	5 cut(s)	49, 56, 262, 368, 457
Hpy188III	TCNNGA	5 cut(s)	22, 33, 79, 311, 716
Hpy8I	GTNNAC	3 cut(s)	100, 274, 496
Hpy99I	CGWCG	2 cut(s)	222, 225
HpyAV	CCTTC	3 cut(s)	290, 632, 778
HpyCH4III	ACNGT	3 cut(s)	233, 318, 781
HpyCH4IV	ACGT	3 cut(s)	223, 483, 748
HpyCH4V	TGCA	3 cut(s)	146, 468, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 438
HpyF3I	CTNAG	4 cut(s)	259, 365, 437, 717
HpySE526I	ACGT	3 cut(s)	223, 483, 748
Hsp92II	CATG	4 cut(s)	106, 204, 314, 335
HspAI	GCGC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	307, 457, 544
LmnI	GCTCC	4 cut(s)	57, 202, 210, 216
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	699, 715
MaeI	CTAG	4 cut(s)	68, 162, 393, 419
MaeII	ACGT	3 cut(s)	223, 483, 748
MaeIII	GTNAC	2 cut(s)	169, 227
MalI	GATC	3 cut(s)	309, 459, 546
MboI	GATC	3 cut(s)	307, 457, 544
MboII	GAAGA	3 cut(s)	23, 318, 521
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	4 cut(s)	402, 649, 654, 739
MlyI	GAGTC	2 cut(s)	347, 638
MmeI	TCCRAC	2 cut(s)	381, 733
MnlI	CCTC	9 cut(s)	201, 225, 266, 426, 463, 584, 694, 714, 723
MseI	TTAA	3 cut(s)	74, 114, 738
MslI	CAYNNNNRTG	2 cut(s)	334, 540
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	133
Mva1269I	GAATGC	2 cut(s)	432, 524
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	252, 438
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	307, 457, 544
NlaIII	CATG	4 cut(s)	106, 204, 314, 335
NlaIV	GGNNCC	4 cut(s)	189, 206, 287, 459
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	334
PagI	TCATGA	1 cut(s)	310
PctI	GAATGC	2 cut(s)	432, 524
PfeI	GAWTC	2 cut(s)	29, 762
PkrI	GCNGC	3 cut(s)	142, 145, 245
PleI	GAGTC	2 cut(s)	347, 638
PpsI	GAGTC	2 cut(s)	347, 638
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	4 cut(s)	189, 206, 287, 459
PsuI	RGATCY	1 cut(s)	457
RseI	CAYNNNNRTG	2 cut(s)	334, 540
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	74, 114, 738
SatI	GCNGC	3 cut(s)	141, 144, 244
Sau3AI	GATC	3 cut(s)	307, 457, 544
SchI	GAGTC	2 cut(s)	347, 638
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	699, 715
SmiMI	CAYNNNNRTG	2 cut(s)	334, 540
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	4 cut(s)	402, 649, 654, 739
SsiI	CCGC	2 cut(s)	141, 244
SspMI	CTAG	4 cut(s)	68, 162, 393, 419
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	183, 200
TaaI	ACNGT	3 cut(s)	233, 318, 781
TaiI	ACGT	3 cut(s)	226, 486, 751
TaqI	TCGA	2 cut(s)	217, 647
TasI	AATT	4 cut(s)	402, 649, 654, 739
TauI	GCSGC	2 cut(s)	143, 246
TfiI	GAWTC	2 cut(s)	29, 762
Tru1I	TTAA	3 cut(s)	74, 114, 738
Tru9I	TTAA	3 cut(s)	74, 114, 738
TscAI	CASTG	2 cut(s)	562, 786
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	3 cut(s)	41, 52, 450
TspRI	CASTG	2 cut(s)	562, 786
XapI	RAATTY	2 cut(s)	402, 649
XspI	CTAG	4 cut(s)	68, 162, 393, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.