Rorug01G0179500

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000700
Physical Location & Seq
Forward (+)
24649694 .. 24650363
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0179500.1

Sequence Viewer

Length: 303 bp
ATGGCACAAATTGAGGAAACATGGAAACAAAACCCTTTGCTGCCCGAAGATCCTCACGATAGAGCCACTGCACCATTTTGGGCCAAATTTGGCGATGACAAGGTTTTTCCACACATTGTGGATGCCTTATGCAGTGAAGGGAAAGAGCAAGAGGAAGCTATTGTGAAAGCAAAGGAGAACTTGAAGTATTTGGAAGAAGAGCTAAAGGGAAAGAAATTCTTTGGGGGAGAGCAAATTGGATTTGCAGATATTGCCCTCAGATGGCTTGGCTTGCACACCATGAGAACGTGTCTGAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

100

Amino Acids

11.5

Weight (kDa)

5.36

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 34 - 86 3.4e-08 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27550
fragaria_vesca FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis pycom13g10170 pycom16g10020
rosa_chinensis RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 2 cut(s) 86, 215
AdeI CACNNNGTG 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 287
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 2 cut(s) 158, 202
AluI AGCT 2 cut(s) 158, 202
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 86, 215
AspS9I GGNCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 255
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 81
BmsI GCATC 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 270
BspPI GGATC 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 192
BssMI GATC 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 251, 271
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 2 cut(s) 66, 139
BtsIMutI CAGTG 2 cut(s) 66, 139
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 2 cut(s) 21, 280
CviJI RGCY 6 cut(s) 65, 83, 158, 202, 265, 270
CviKI_1 RGCY 6 cut(s) 65, 83, 158, 202, 265, 270
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
DraIII CACNNNGTG 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
FaeI CATG 2 cut(s) 24, 283
FaiI YATR 3 cut(s) 22, 130, 281
FalI AAGNNNNNCTT 4 cut(s) 164, 196, 203, 235
FatI CATG 2 cut(s) 20, 279
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 83
Hin1II CATG 2 cut(s) 24, 283
Hpy188I TCNGA 2 cut(s) 260, 294
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 4 cut(s) 71, 132, 245, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 271
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 2 cut(s) 24, 283
Kzo9I GATC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 112
MaeII ACGT 1 cut(s) 287
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 59, 206, 209
MflI RGATCY 1 cut(s) 49
MluCI AATT 4 cut(s) 9, 86, 215, 234
MnlI CCTC 4 cut(s) 7, 63, 145, 266
MwoI GCNNNNNNNGC 2 cut(s) 251, 271
NdeII GATC 1 cut(s) 49
NlaIII CATG 2 cut(s) 24, 283
PciSI GCTCTTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 192
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 81
SetI ASST 4 cut(s) 105, 160, 204, 290
SfaNI GCATC 1 cut(s) 112
SgeI CNNG 9 cut(s) 33, 56, 68, 112, 161, 193, 278, 283, 292
Sse9I AATT 4 cut(s) 9, 86, 215, 234
TaiI ACGT 1 cut(s) 290
TasI AATT 4 cut(s) 9, 86, 215, 234
TscAI CASTG 2 cut(s) 73, 139
TseI GCWGC 1 cut(s) 40
TspRI CASTG 2 cut(s) 73, 139
XapI RAATTY 2 cut(s) 86, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.