AT3G12500

Chitin binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000495
Physical Location & Seq
Reverse (-)
3962136 .. 3963984
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12500.1

Sequence Viewer

Length: 1008 bp
ATGCCTCCACAAAAAGAAAACCATAGAACATTGAACAAAATGAAGACTAATCTTTTTCTCTTTCTCATCTTTTCACTTCTCCTATCATTATCCTCGGCCGAGCAATGTGGTCGCCAAGCTGGAGGAGCACTCTGCCCCAACGGTCTATGCTGCAGCGAGTTCGGCTGGTGCGGTAACACCGAACCATACTGTAAGCAGCCTGGCTGCCAAAGCCAGTGCACTCCCGGTGGTACTCCTCCTGGACCCACCGGCGATCTTTCGGGCATCATTTCAAGTTCTCAGTTCGATGATATGCTTAAGCATAGGAATGATGCCGCTTGTCCTGCTAGAGGTTTCTACACTTACAACGCCTTTATCACCGCTGCAAAGTCCTTCCCCGGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAGGTCGCCGCCTTCTTCGGCCAGACTTCCCATGAAACTACAGGTGGATGGGCTACAGCACCAGACGGACCATATTCATGGGGCTACTGTTTCAAGCAAGAACAGAATCCTGCTTCAGACTACTGTGAACCGAGCGCCACGTGGCCATGCGCATCTGGCAAACGCTACTACGGAAGAGGACCAATGCAACTGTCGTGGAACTACAATTACGGTCTATGCGGTAGAGCAATAGGAGTTGACTTACTCAACAACCCTGACCTTGTTGCCAACGACGCAGTGATCGCTTTCAAAGCCGCGATTTGGTTCTGGATGACTGCTCAGCCTCCCAAACCGTCTTGCCATGCCGTGATAGCCGGCCAGTGGCAGCCTTCAGACGCCGACCGTGCCGCCGGGAGATTACCGGGTTATGGAGTGATTACGAACATCATTAACGGTGGATTGGAGTGTGGACGTGGCCAAGACGGGAGAGTCGCCGATCGTATAGGGTTTTATCAGAGGTATTGTAACATATTTGGTGTTAATCCTGGTGGTAATCTTGATTGTTACAACCAAAGATCCTTCGTTAACGGCCTCCTCGAAGCTGCTATTTAG

Protein Analysis

335

Amino Acids

36.18

Weight (kDa)

7.81

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 35 - 73 1.1e-13 Chitin recognition protein
Glyco_hydro_19 PF00182 89 - 320 3.5e-138 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
Acc16I TGCGCA 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 386
AccII CGCG 1 cut(s) 713
AciI CCGC 8 cut(s) 171, 315, 360, 402, 426, 636, 711, 804
AclWI GGATC 1 cut(s) 966
AcoI YGGCCR 5 cut(s) 96, 436, 560, 772, 871
AcuI CTGAAG 2 cut(s) 516, 771
AcvI CACGTG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 792
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 6 cut(s) 329, 383, 408, 717, 777, 824
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 34, 273, 511, 706
AjiI CACGTC 1 cut(s) 869
AjnI CCWGG 3 cut(s) 199, 238, 940
AluBI AGCT 2 cut(s) 119, 998
AluI AGCT 2 cut(s) 119, 998
Alw21I GWGCWC 2 cut(s) 130, 221
Alw26I GTCTC 1 cut(s) 390
Alw44I GTGCAC 1 cut(s) 217
AlwI GGATC 1 cut(s) 966
AoxI GGCC 6 cut(s) 96, 436, 560, 772, 871, 985
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 7 cut(s) 150, 153, 196, 204, 362, 781, 998
AspLEI GCGC 2 cut(s) 554, 569
AspS9I GGNCC 3 cut(s) 242, 485, 596
AsuC2I CCSGG 4 cut(s) 225, 378, 808, 819
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 3 cut(s) 242, 485, 596
BaeGI GKGCMC 1 cut(s) 221
BalI TGGCCA 2 cut(s) 562, 873
BanI GGYRCC 1 cut(s) 386
BauI CACGAG 1 cut(s) 406
BbrPI CACGTG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 130, 221
BbvI GCAGC 7 cut(s) 137, 165, 191, 208, 349, 793, 985
BccI CCATC 1 cut(s) 459
BceAI ACGGC 2 cut(s) 746, 1000
BcgI CGANNNNNNTGC 4 cut(s) 92, 126, 142, 176
BciT130I CCWGG 3 cut(s) 201, 240, 942
BcnI CCSGG 4 cut(s) 225, 378, 808, 819
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 3 cut(s) 151, 456, 471
BfoI RGCGCY 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 296
BlpI GCTNAGC 1 cut(s) 735
Bme1390I CCNGG 7 cut(s) 201, 225, 240, 378, 808, 819, 942
Bme18I GGWCC 3 cut(s) 242, 485, 596
BmgBI CACGTC 1 cut(s) 869
BmgT120I GGNCC 3 cut(s) 242, 485, 596
BmiI GGNNCC 2 cut(s) 244, 388
BmrFI CCNGG 7 cut(s) 201, 225, 240, 378, 808, 819, 942
BmsI GCATC 3 cut(s) 273, 301, 578
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpmI CTGGAG 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 735
BpuMI CCSGG 4 cut(s) 225, 378, 808, 819
BsaAI YACGTR 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 792
BsaJI CCNNGG 2 cut(s) 93, 376
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 6 cut(s) 329, 383, 408, 717, 777, 824
Bse118I RCCGGY 2 cut(s) 248, 770
Bse1I ACTGG 2 cut(s) 214, 775
Bse3DI GCAATG 1 cut(s) 110
BseBI CCWGG 3 cut(s) 201, 240, 942
BseDI CCNNGG 2 cut(s) 93, 376
BseGI GGATG 2 cut(s) 470, 732
BseLI CCNNNNNNNGG 6 cut(s) 329, 383, 408, 717, 777, 824
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 293, 749
BseNI ACTGG 2 cut(s) 214, 775
BseRI GAGGAG 3 cut(s) 138, 225, 980
BseSI GKGCMC 1 cut(s) 221
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 7 cut(s) 137, 165, 191, 208, 349, 793, 985
Bsh1236I CGCG 1 cut(s) 713
Bsh1285I CGRYCG 3 cut(s) 99, 799, 895
BshFI GGCC 6 cut(s) 98, 438, 562, 774, 873, 987
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 3 cut(s) 99, 799, 895
BsiHKAI GWGCWC 2 cut(s) 130, 221
BsiSI CCGG 7 cut(s) 225, 249, 378, 393, 771, 807, 818
BslI CCNNNNNNNGG 6 cut(s) 329, 383, 408, 717, 777, 824
BsmAI GTCTC 1 cut(s) 390
BsnI GGCC 6 cut(s) 98, 438, 562, 774, 873, 987
Bsp1286I GDGCHC 2 cut(s) 130, 221
Bsp143I GATC 4 cut(s) 253, 696, 892, 971
Bsp1720I GCTNAGC 1 cut(s) 735
BspACI CCGC 8 cut(s) 171, 315, 360, 402, 426, 636, 711, 804
BspANI GGCC 6 cut(s) 98, 438, 562, 774, 873, 987
BspCNI CTCAG 2 cut(s) 292, 748
BspFNI CGCG 1 cut(s) 713
BspLI GGNNCC 2 cut(s) 244, 388
BspMAI CTGCAG 1 cut(s) 155
BspPI GGATC 1 cut(s) 966
BspT107I GGYRCC 1 cut(s) 386
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 248, 770
BsrI ACTGG 2 cut(s) 214, 775
BssAI RCCGGY 2 cut(s) 248, 770
BssECI CCNNGG 2 cut(s) 93, 376
BssMI GATC 4 cut(s) 253, 696, 892, 971
BssNI GRCGYC 1 cut(s) 792
BssSI CACGAG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 3 cut(s) 201, 240, 942
Bst4CI ACNGT 9 cut(s) 143, 191, 506, 542, 609, 629, 750, 800, 851
Bst6I CTCTTC 1 cut(s) 586
BstACI GRCGYC 1 cut(s) 792
BstAFI CTTAAG 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 772
BstDEI CTNAG 2 cut(s) 279, 735
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 470, 732
BstFNI CGCG 1 cut(s) 713
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 554, 569
BstKTI GATC 4 cut(s) 256, 699, 895, 974
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 4 cut(s) 253, 696, 892, 971
BstMCI CGRYCG 3 cut(s) 99, 799, 895
BstNI CCWGG 3 cut(s) 201, 240, 942
BstSCI CCNGG 7 cut(s) 199, 223, 238, 376, 806, 817, 940
BstSFI CTRYAG 3 cut(s) 151, 456, 471
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 1 cut(s) 713
BstV1I GCAGC 7 cut(s) 137, 165, 191, 208, 349, 793, 985
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 971
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 1 cut(s) 971
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 6 cut(s) 98, 438, 562, 774, 873, 987
BtrI CACGTC 1 cut(s) 869
BtsCI GGATG 2 cut(s) 470, 732
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 3 cut(s) 221, 699, 782
Cac8I GCNNGC 1 cut(s) 772
CfoI GCGC 2 cut(s) 554, 569
Cfr10I RCCGGY 2 cut(s) 248, 770
Cfr13I GGNCC 3 cut(s) 242, 485, 596
CseI GACGC 2 cut(s) 698, 800
Csp6I GTAC 1 cut(s) 231
CspCI CAANNNNNGTGG 2 cut(s) 593, 628
CviAII CATG 4 cut(s) 449, 495, 564, 758
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 279, 735
DpnI GATC 4 cut(s) 255, 698, 894, 973
DpnII GATC 4 cut(s) 253, 696, 892, 971
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 5 cut(s) 96, 436, 560, 772, 871
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 586
EarI CTCTTC 1 cut(s) 586
EclXI CGGCCG 1 cut(s) 96
Eco47I GGWCC 3 cut(s) 242, 485, 596
Eco52I CGGCCG 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 516, 771
Eco72I CACGTG 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoRII CCWGG 3 cut(s) 199, 238, 940
FaeI CATG 4 cut(s) 452, 498, 567, 761
FatI CATG 4 cut(s) 448, 494, 563, 757
FokI GGATG 2 cut(s) 477, 739
FspAI RTGCGCAY 1 cut(s) 568
FspBI CTAG 1 cut(s) 327
FspI TGCGCA 1 cut(s) 568
GlaI GCGC 2 cut(s) 553, 568
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 6 cut(s) 98, 438, 562, 774, 873, 987
HapII CCGG 7 cut(s) 225, 249, 378, 393, 771, 807, 818
HgaI GACGC 2 cut(s) 698, 800
HhaI GCGC 2 cut(s) 554, 569
Hin1I GRCGYC 1 cut(s) 792
Hin1II CATG 4 cut(s) 452, 498, 567, 761
Hin6I GCGC 2 cut(s) 552, 567
HinP1I GCGC 2 cut(s) 552, 567
HincII GTYRAC 2 cut(s) 655, 982
HindII GTYRAC 2 cut(s) 655, 982
HinfI GANTC 2 cut(s) 523, 885
HpaI GTTAAC 1 cut(s) 982
HpaII CCGG 7 cut(s) 225, 249, 378, 393, 771, 807, 818
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 5 cut(s) 219, 545, 655, 866, 982
Hpy188I TCNGA 3 cut(s) 535, 790, 912
Hpy188III TCNNGA 2 cut(s) 724, 953
Hpy8I GTNNAC 5 cut(s) 219, 545, 655, 866, 982
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 5 cut(s) 382, 409, 439, 795, 985
HpyCH4III ACNGT 9 cut(s) 143, 191, 506, 542, 609, 629, 750, 800, 851
HpyCH4IV ACGT 2 cut(s) 557, 868
HpyCH4V TGCA 4 cut(s) 153, 219, 365, 604
HpyF3I CTNAG 2 cut(s) 279, 735
HpySE526I ACGT 2 cut(s) 557, 868
Hsp92I GRCGYC 1 cut(s) 792
Hsp92II CATG 4 cut(s) 452, 498, 567, 761
HspAI GCGC 2 cut(s) 552, 567
KroI GCCGGC 1 cut(s) 770
KroNI GCCGGC 1 cut(s) 772
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 4 cut(s) 253, 696, 892, 971
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 7 cut(s) 137, 165, 191, 208, 349, 793, 985
LweI GCATC 3 cut(s) 273, 301, 578
MaeI CTAG 1 cut(s) 327
MaeII ACGT 2 cut(s) 557, 868
MaeIII GTNAC 3 cut(s) 173, 920, 959
MalI GATC 4 cut(s) 255, 698, 894, 973
MboI GATC 4 cut(s) 253, 696, 892, 971
MboII GAAGA 4 cut(s) 55, 424, 424, 603
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 2 cut(s) 130, 221
MlsI TGGCCA 2 cut(s) 562, 873
MluCI AATT 1 cut(s) 622
MluNI TGGCCA 2 cut(s) 562, 873
MlyI GAGTC 1 cut(s) 894
Mox20I TGGCCA 2 cut(s) 562, 873
MroNI GCCGGC 1 cut(s) 770
MscI TGGCCA 2 cut(s) 562, 873
MseI TTAA 4 cut(s) 297, 846, 936, 981
MslI CAYNNNNRTG 2 cut(s) 306, 493
Msp20I TGGCCA 2 cut(s) 562, 873
MspA1I CMGCKG 1 cut(s) 362
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 7 cut(s) 225, 249, 378, 393, 771, 807, 818
MspR9I CCNGG 7 cut(s) 201, 225, 240, 378, 808, 819, 942
MvaI CCWGG 3 cut(s) 201, 240, 942
MvnI CGCG 1 cut(s) 713
NaeI GCCGGC 1 cut(s) 772
NciI CCSGG 4 cut(s) 225, 378, 808, 819
NdeII GATC 4 cut(s) 253, 696, 892, 971
NgoMIV GCCGGC 1 cut(s) 770
NlaIII CATG 4 cut(s) 452, 498, 567, 761
NlaIV GGNNCC 2 cut(s) 244, 388
NmeAIII GCCGAG 2 cut(s) 74, 124
NsbI TGCGCA 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PdiI GCCGGC 1 cut(s) 772
PfeI GAWTC 1 cut(s) 523
PfoI TCCNGGA 1 cut(s) 238
Ple19I CGATCG 1 cut(s) 895
PleI GAGTC 1 cut(s) 893
PmaCI CACGTG 1 cut(s) 558
PmlI CACGTG 1 cut(s) 558
PpsI GAGTC 1 cut(s) 893
Ppu21I YACGTR 1 cut(s) 558
Psp6I CCWGG 3 cut(s) 199, 238, 940
PspCI CACGTG 1 cut(s) 558
PspGI CCWGG 3 cut(s) 199, 238, 940
PspN4I GGNNCC 2 cut(s) 244, 388
PspPI GGNCC 3 cut(s) 242, 485, 596
PsrI GAACNNNNNNTAC 2 cut(s) 608, 640
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 971
PvuI CGATCG 1 cut(s) 895
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 2 cut(s) 306, 493
SaqAI TTAA 4 cut(s) 297, 846, 936, 981
Sau3AI GATC 4 cut(s) 253, 696, 892, 971
Sau96I GGNCC 3 cut(s) 242, 485, 596
SchI GAGTC 1 cut(s) 894
ScrFI CCNGG 7 cut(s) 201, 225, 240, 378, 808, 819, 942
SduI GDGCHC 2 cut(s) 130, 221
SetI ASST 9 cut(s) 121, 334, 423, 463, 560, 678, 871, 917, 1000
SfaNI GCATC 3 cut(s) 273, 301, 578
SfcI CTRYAG 3 cut(s) 151, 456, 471
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 3 cut(s) 242, 485, 596
SmiMI CAYNNNNRTG 2 cut(s) 306, 493
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 622
SsiI CCGC 8 cut(s) 171, 315, 360, 402, 426, 636, 711, 804
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 7 cut(s) 199, 223, 238, 376, 806, 817, 940
TaaI ACNGT 9 cut(s) 143, 191, 506, 542, 609, 629, 750, 800, 851
TaiI ACGT 2 cut(s) 560, 871
TaqI TCGA 2 cut(s) 285, 993
TasI AATT 1 cut(s) 622
TauI GCSGC 4 cut(s) 317, 428, 713, 806
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 4 cut(s) 297, 846, 936, 981
Tru9I TTAA 4 cut(s) 297, 846, 936, 981
TscAI CASTG 3 cut(s) 221, 699, 782
TseI GCWGC 7 cut(s) 150, 153, 196, 204, 362, 781, 998
TspDTI ATGAA 3 cut(s) 56, 465, 483
TspGWI ACGGA 2 cut(s) 498, 603
TspRI CASTG 3 cut(s) 221, 699, 782
Vha464I CTTAAG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 217
VpaK11BI GGWCC 3 cut(s) 242, 485, 596
XagI CCTNNNNNAGG 1 cut(s) 327
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.