RchiOBHm_Chr2g0097801

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000495
Physical Location & Seq
Forward (+)
10342539 .. 10343435
897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47264

Sequence Viewer

Length: 543 bp
ATGGTACGGGTGATTAAACGAGTACGTTTCATTAATTGTATGGTTGATTATGTAGATGATCCTTATGCATGGGGCTATTGCTTTGTCAATGAAAACAACCAGGATGTGTATTGTTCTAACACAATATCCATGTGCTCCTGGCTAGAAATACTATGGTCGAGGACCCATTCAACTAACCCATTATCAACTACAACTATGGTCAGGCGGGTAAAGCAATCGGAGTCGGATCTGATAAACAATCCGGACCTAGTGGCCACAGACCCGGTTGTTTCATTCAAGACAGCAATGTGGTTTTGGATGACTCCACAATCAAACAAACCGTCAAGCCACGACGTCATTACCGGACGTTGGAACCCATCTGATGCAGATATATGCGCGGGTCGGGTCCCTGGATATGGTGTGATTACTAACATCATGAATGGCGGACTTGAATGTGGGCATGGTCAAGATGATAAGGTGGCGAATAGGATCGGGTTCTATAGGAGGTACGCGGGCATATTGGGAGTGAGCCCTGGAGACAACTTAGATTGCTGTAACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

180

Amino Acids

20.27

Weight (kDa)

5.86

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 18 - 177 2.7e-64 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 336
AccII CGCG 2 cut(s) 377, 491
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 4 cut(s) 205, 377, 423, 491
AclWI GGATC 3 cut(s) 53, 234, 476
AcoI YGGCCR 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 3 cut(s) 6, 24, 488
AfiI CCNNNNNNNGG 2 cut(s) 348, 395
AgsI TTSAA 3 cut(s) 171, 277, 431
AjnI CCWGG 4 cut(s) 99, 137, 388, 511
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 3 cut(s) 53, 234, 476
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 252
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 162, 244, 385
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 3 cut(s) 162, 244, 385
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 137
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 4 cut(s) 101, 139, 390, 513
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 2 cut(s) 143, 248
BfmI CTRYAG 1 cut(s) 478
Bme1390I CCNGG 5 cut(s) 101, 139, 263, 390, 513
Bme18I GGWCC 3 cut(s) 162, 244, 385
BmgT120I GGNCC 3 cut(s) 162, 244, 385
BmiI GGNNCC 4 cut(s) 164, 353, 386, 387
BmrFI CCNGG 5 cut(s) 101, 139, 263, 390, 513
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 388, 511
BsaWI WCCGGW 2 cut(s) 241, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 395
Bse3DI GCAATG 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 4 cut(s) 101, 139, 390, 513
BseDI CCNNGG 2 cut(s) 388, 511
BseGI GGATG 2 cut(s) 109, 303
BseLI CCNNNNNNNGG 2 cut(s) 348, 395
BseMI GCAATG 1 cut(s) 291
Bsh1236I CGCG 2 cut(s) 377, 491
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 3 cut(s) 242, 263, 342
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 348, 395
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 137, 512
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 58, 226, 468
BspACI CCGC 4 cut(s) 205, 377, 423, 491
BspANI GGCC 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 377, 491
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 4 cut(s) 164, 353, 386, 387
BspPI GGATC 3 cut(s) 53, 234, 476
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 388, 511
BssMI GATC 3 cut(s) 58, 226, 468
BssNI GRCGYC 1 cut(s) 333
Bst2UI CCWGG 4 cut(s) 101, 139, 390, 513
Bst4CI ACNGT 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 109, 303
BstFNI CGCG 2 cut(s) 377, 491
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 3 cut(s) 61, 229, 471
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 3 cut(s) 58, 226, 468
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 4 cut(s) 101, 139, 390, 513
BstSCI CCNGG 5 cut(s) 99, 137, 261, 388, 511
BstSFI CTRYAG 1 cut(s) 478
BstUI CGCG 2 cut(s) 377, 491
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 2 cut(s) 109, 303
Cac8I GCNNGC 1 cut(s) 493
CciI TCATGA 1 cut(s) 414
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 162, 244, 385
Csp6I GTAC 3 cut(s) 5, 23, 487
CviAII CATG 4 cut(s) 69, 130, 415, 440
CviJI RGCY 5 cut(s) 75, 142, 254, 327, 510
CviKI_1 RGCY 5 cut(s) 75, 142, 254, 327, 510
CviQI GTAC 3 cut(s) 5, 23, 487
DdeI CTNAG 1 cut(s) 523
DpnI GATC 3 cut(s) 60, 228, 470
DpnII GATC 3 cut(s) 58, 226, 468
EaeI YGGCCR 1 cut(s) 252
EciI GGCGGA 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 512
Eco47I GGWCC 3 cut(s) 162, 244, 385
EcoO109I RGGNCCY 2 cut(s) 162, 385
EcoRII CCWGG 4 cut(s) 99, 137, 388, 511
EcoT22I ATGCAT 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 4 cut(s) 72, 133, 418, 443
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 68, 129, 414, 439
FauI CCCGC 3 cut(s) 198, 370, 484
FokI GGATG 2 cut(s) 116, 310
FriOI GRGCYC 1 cut(s) 512
FspBI CTAG 2 cut(s) 143, 248
GlaI GCGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 1 cut(s) 254
HapII CCGG 3 cut(s) 242, 263, 342
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 4 cut(s) 72, 133, 418, 443
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 2 cut(s) 221, 301
HpaII CCGG 3 cut(s) 242, 263, 342
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 220, 226, 231, 361
Hpy188III TCNNGA 4 cut(s) 242, 277, 415, 446
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 3 cut(s) 25, 333, 346
HpyCH4V TGCA 2 cut(s) 68, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 523
HpySE526I ACGT 3 cut(s) 25, 333, 346
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 4 cut(s) 72, 133, 418, 443
HspAI GCGC 1 cut(s) 375
KflI GGGWCCC 1 cut(s) 385
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 3 cut(s) 58, 226, 468
LmnI GCTCC 1 cut(s) 140
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 143, 248
MaeII ACGT 3 cut(s) 25, 333, 346
MaeIII GTNAC 1 cut(s) 533
MalI GATC 3 cut(s) 60, 228, 470
MboI GATC 3 cut(s) 58, 226, 468
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 2 cut(s) 137, 512
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 34
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 2 cut(s) 230, 295
MmeI TCCRAC 2 cut(s) 204, 329
MnlI CCTC 2 cut(s) 153, 477
Mox20I TGGCCA 1 cut(s) 254
Mph1103I ATGCAT 1 cut(s) 70
MroI TCCGGA 1 cut(s) 241
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 15, 33
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 3 cut(s) 242, 263, 342
MspR9I CCNGG 5 cut(s) 101, 139, 263, 390, 513
MvaI CCWGG 4 cut(s) 101, 139, 390, 513
MvnI CGCG 2 cut(s) 377, 491
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 263
NdeII GATC 3 cut(s) 58, 226, 468
NlaIII CATG 4 cut(s) 72, 133, 418, 443
NlaIV GGNNCC 4 cut(s) 164, 353, 386, 387
NsiI ATGCAT 1 cut(s) 70
PagI TCATGA 1 cut(s) 414
PleI GAGTC 2 cut(s) 229, 295
PpsI GAGTC 2 cut(s) 229, 295
PpuMI RGGWCCY 2 cut(s) 162, 385
PshBI ATTAAT 1 cut(s) 33
Psp5II RGGWCCY 2 cut(s) 162, 385
Psp6I CCWGG 4 cut(s) 99, 137, 388, 511
PspGI CCWGG 4 cut(s) 99, 137, 388, 511
PspN4I GGNNCC 4 cut(s) 164, 353, 386, 387
PspPI GGNCC 3 cut(s) 162, 244, 385
PspPPI RGGWCCY 2 cut(s) 162, 385
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 3 cut(s) 6, 24, 488
RsaNI GTAC 3 cut(s) 5, 23, 487
SaqAI TTAA 2 cut(s) 15, 33
Sau3AI GATC 3 cut(s) 58, 226, 468
Sau96I GGNCC 3 cut(s) 162, 244, 385
SchI GAGTC 2 cut(s) 230, 295
ScrFI CCNGG 5 cut(s) 101, 139, 263, 390, 513
SduI GDGCHC 2 cut(s) 137, 512
SetI ASST 7 cut(s) 28, 249, 336, 349, 459, 488, 540
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 478
SinI GGWCC 3 cut(s) 162, 244, 385
Sse9I AATT 1 cut(s) 34
SsiI CCGC 4 cut(s) 205, 377, 423, 491
SspMI CTAG 2 cut(s) 143, 248
StyD4I CCNGG 5 cut(s) 99, 137, 261, 388, 511
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 3 cut(s) 28, 336, 349
TaqI TCGA 1 cut(s) 158
TasI AATT 1 cut(s) 34
Tru1I TTAA 2 cut(s) 15, 33
Tru9I TTAA 2 cut(s) 15, 33
TspDTI ATGAA 4 cut(s) 19, 105, 261, 431
VpaK11BI GGWCC 3 cut(s) 162, 244, 385
VspI ATTAAT 1 cut(s) 33
XspI CTAG 2 cut(s) 143, 248
ZraI GACGTC 1 cut(s) 334
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.