RchiOBHm_Chr6g0279811

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000495
Physical Location & Seq
Reverse (-)
42996766 .. 42998005
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25092

Sequence Viewer

Length: 297 bp
ATGCTTAAGCATAGGAAAGATGGTGGTTGCTCTGCCAAAGGGTTTTATACTTACGATGCCTTCGTTGCAGCTGCCAAGTCCTTCCCCAACTTTATACAAGATGTATGCGGTCAAGGTTGGAATGCTAAGGTTGAGGACCGTATTGGATTTATAAGAGGGTTTGGCGATTTGCTTGGGGTTGGCTATGGTGACAACCTTGATTGTTACAATCAGAGGCTTTTTGGAATAGACTTATTCATTATGCTATTCAGTGCCTCAAACCAGTGTAATATGAGGTGTGAATTTTTTTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

98

Amino Acids

11.1

Weight (kDa)

6.52

Isoelectric Point (pI)

12.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 1 - 31 6e-10 Chitinase class I
Glyco_hydro_19 PF00182 36 - 68 3.5e-07 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12500
fragaria_vesca FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10640 FvH4_1g10641 FvH4_1g10641 FvH4_1g10642 FvH4_1g10643 FvH4_1g10650 FvH4_1g10660 FvH4_1g10660 FvH4_1g10661 FvH4_2g16190
malus_domestica MD02G1120200.v1.1 MD02G1120300.v1.1 MD15G1234400.v1.1
prunus_persica Prupe.7G178500_v2.0.a1 Prupe.8G174900_v2.0.a1
pyrus_communis pycom02g09370 pycom02g09380 pycom02g09390
rosa_chinensis RchiOBHm_Chr2g0097671 RchiOBHm_Chr2g0097691 RchiOBHm_Chr2g0097731 RchiOBHm_Chr2g0097781 RchiOBHm_Chr2g0097801 RchiOBHm_Chr2g0097821 RchiOBHm_Chr6g0279811 RchiOBHm_Chr6g0279831 RchiOBHm_Chr6g0279841
rosa_laevigata RLG00000013112 RLG00000013114 RLG00000016734 RLG00000016736 RLG00000016737 RLG00000016738
rosa_multiflora Rmu_sc0000974.1_g000004 Rmu_sc0000974.1_g000013 Rmu_sc0000974.1_g000019 Rmu_sc0000974.1_g000025 Rmu_sc0002340.1_g000010 Rmu_sc0008442.1_g000003 Rmu_sc0008442.1_g000009 Rmu_sc0020401.1_g000002
rosa_roxburghii Rroxscaffold_2G00140520 Rroxscaffold_2G00144540 Rroxscaffold_2G00144580 Rroxscaffold_2G00144590 Rroxscaffold_7G00188570 Rroxscaffold_7G00188590 Rroxscaffold_7G00188610
rosa_rugosa Rorug02G0068300 Rorug02G0068400 Rorug06G0128600
rosa_samantha Rh2AG114800 Rh2AG114900 Rh2AG115000 Rh2AG115100 Rh2BG117600 Rh2BG117800 Rh2BG117900 Rh2BG118000 Rh2CG119600 Rh2DG118500 Rh2DG118800 Rh2DG119100 Rh2DG119200 Rh2DG119300 Rh5AG369400 Rh5CG403900 Rh6AG236600 Rh6AG236700 Rh6AG236800 Rh6AG237300 Rh6BG241000 Rh6BG241200 Rh6BG241400 Rh6CG243300 Rh6CG243400 Rh6CG243600 Rh6DG234400 Rh6DG234500 Rh7AG282100
rosa_wichuraiana Rw2G008980 Rw2G008990 Rw6G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AciI CCGC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 281
AflII CTTAAG 1 cut(s) 5
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 68, 71
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 58, 80
BccI CCATC 1 cut(s) 14
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 2 cut(s) 69, 72
BlsI GCNGC 2 cut(s) 70, 73
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 2 cut(s) 58, 80
BsmI GAATGC 1 cut(s) 127
BspACI CCGC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 140
BstAFI CTTAAG 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 58, 80
BtsIMutI CAGTG 2 cut(s) 256, 269
Cfr13I GGNCC 1 cut(s) 136
CviJI RGCY 3 cut(s) 71, 183, 217
CviKI_1 RGCY 3 cut(s) 71, 183, 217
DdeI CTNAG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 136
FaiI YATR 8 cut(s) 12, 48, 95, 106, 152, 186, 242, 272
Fnu4HI GCNGC 2 cut(s) 69, 72
Fsp4HI GCNGC 2 cut(s) 69, 72
GluI GCNGC 2 cut(s) 69, 72
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 70, 91
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 126
LpnPI CCDG 1 cut(s) 275
Lsp1109I GCAGC 2 cut(s) 58, 80
LweI GCATC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 188, 203
MluCI AATT 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 127, 149, 207, 265, 267
MseI TTAA 2 cut(s) 6, 295
MspA1I CMGCKG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 70, 73
PsiI TTATAA 1 cut(s) 152
PspPI GGNCC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 6, 295
SatI GCNGC 2 cut(s) 69, 72
Sau96I GGNCC 1 cut(s) 136
SetI ASST 5 cut(s) 73, 118, 132, 198, 278
SfaNI GCATC 1 cut(s) 46
SgeI CNNG 6 cut(s) 88, 110, 125, 185, 209, 274
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 1 cut(s) 281
SsiI CCGC 1 cut(s) 108
TaaI ACNGT 1 cut(s) 140
TasI AATT 1 cut(s) 281
Tru1I TTAA 2 cut(s) 6, 295
Tru9I TTAA 2 cut(s) 6, 295
TscAI CASTG 2 cut(s) 256, 269
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 68, 71
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 226
TspRI CASTG 2 cut(s) 256, 269
Vha464I CTTAAG 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.